Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 9.0e-110 400.6 253 100.0
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 9.0e-110 400.6 253 100.0
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 1.2e-109 400.2 252 100.0
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 4.0e-102 375.2 256 91.8
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 4.0e-102 375.2 256 91.8
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 5.0e-92 341.7 261 80.1
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 1.1e-88 330.5 254 81.9
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 1.3e-87 327.0 257 77.0
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 2.5e-83 312.8 254 74.8
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 1.0e-81 307.4 254 73.6
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 1.0e-81 307.4 254 73.6
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 8.8e-81 304.3 252 75.0
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 4.8e-79 298.5 261 70.5
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 2.6e-77 292.7 257 70.8
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 5.9e-53 211.8 253 50.6
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 1.7e-52 210.3 252 57.5
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 2.5e-51 206.5 246 54.1
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 4.2e-51 205.7 249 50.2
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 6.1e-50 201.8 269 48.7
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 6.8e-49 198.4 265 49.1
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 2.2e-47 193.4 259 49.4
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 2.8e-47 193.0 260 48.1
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 3.7e-47 192.6 252 51.6
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 3.7e-47 192.6 252 51.6
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 1.4e-46 190.7 252 51.2
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.8e-46 190.3 253 49.0
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 2.4e-46 189.9 253 53.8
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 4.1e-46 189.1 263 46.4
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 5.4e-46 188.7 273 46.2
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 7.0e-46 188.3 260 48.5
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 9.2e-46 188.0 265 52.1
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 1.2e-45 187.6 257 52.9
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 1.6e-45 187.2 260 49.2
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 1.6e-45 187.2 261 46.4
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 1.6e-45 187.2 263 46.0
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 2.0e-45 186.8 252 48.8
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 2.0e-45 186.8 256 48.0
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 2.7e-45 186.4 251 46.6
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 4.5e-45 185.7 263 45.6
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 1.0e-44 184.5 257 46.3
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.3e-44 184.1 253 47.8
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 1.3e-44 184.1 253 53.0
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 2.3e-44 183.3 249 47.0
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 2.3e-44 183.3 251 43.4
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 2.3e-44 183.3 266 47.4
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 2.9e-44 183.0 253 47.8
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 2.9e-44 183.0 251 46.2
BcaC04g19403 Brassica carinata HOM05D006466 ORTHO05D008084 3.8e-44 182.6 145 89.7
BolC9t58475H Brassica oleracea HOM05D006466 ORTHO05D008084 3.8e-44 182.6 145 89.7
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 3.8e-44 182.6 264 51.9
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 1.1e-43 181.0 251 49.0
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 1.1e-43 181.0 258 50.4
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 4.3e-43 179.1 251 46.6
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 5.6e-43 178.7 253 46.6
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 6.1e-42 175.3 258 46.9
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 6.1e-42 175.3 263 44.5
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 1.4e-41 174.1 252 44.0
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 5.2e-41 172.2 247 46.2
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 6.8e-41 171.8 197 53.3
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 8.9e-41 171.4 245 48.2
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 8.9e-41 171.4 238 50.0
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 1.2e-40 171.0 244 48.0
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 3.4e-40 169.5 254 50.0
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 4.4e-40 169.1 259 50.2
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 5.8e-40 168.7 196 56.6
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.3e-39 167.5 186 53.2
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 2.2e-39 166.8 251 43.4
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 6.4e-39 165.2 250 51.2
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 1.1e-38 164.5 248 49.2
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 1.1e-38 164.5 253 43.9
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.4e-38 163.3 252 52.4
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 2.4e-38 163.3 251 45.4
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 3.2e-38 162.9 256 49.2
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 3.2e-38 162.9 180 53.3
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 4.1e-38 162.5 270 44.8
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 1.6e-37 160.6 184 50.0
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 3.5e-37 159.5 182 58.2
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 5.0e-36 155.6 252 45.2
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 5.0e-36 155.6 252 44.0
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 6.6e-36 155.2 259 49.4
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 1.5e-35 154.1 189 51.3
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 3.3e-35 152.9 250 50.0
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 4.3e-35 152.5 252 43.7
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 7.3e-35 151.8 248 41.5
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 9.5e-35 151.4 262 39.3
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 3.6e-34 149.4 261 40.2
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 6.2e-34 148.7 245 42.4
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 3.1e-33 146.4 255 47.5
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 8.9e-33 144.8 258 43.0
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 1.2e-32 144.4 189 44.4
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 1.2e-32 144.4 259 45.2
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 2.0e-32 143.7 263 44.9
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 5.8e-32 142.1 181 52.5
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 5.8e-32 142.1 181 52.5
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 5.8e-32 142.1 256 47.7
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 4.9e-31 139.0 255 38.8
C03p73400 Brassica napus HOM05D006466 ORTHO05D008084 4.1e-30 136.0 94 74.5
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 4.1e-30 136.0 253 43.9
BraA04t17310Z Brassica rapa HOM05D006466 ORTHO05D008084 7.0e-30 135.2 88 85.2
BcaC01g01648 Brassica carinata HOM05D006466 ORTHO05D008084 6.0e-29 132.1 88 76.1
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 7.8e-29 131.7 189 43.4
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 1.0e-28 131.3 246 39.8
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 1.7e-28 130.6 247 38.9
C09p56080 Brassica napus HOM05D006466 ORTHO05D008084 2.8e-26 123.2 88 85.2
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 3.4e-24 116.3 253 36.4
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 4.4e-24 115.9 254 34.6
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 2.2e-23 113.6 217 39.2
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 6.4e-23 112.1 256 39.8
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 4.1e-22 109.4 133 51.1
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 4.1e-22 109.4 272 34.6
C03p59450 Brassica napus HOM05D006466 ORTHO05D008084 1.7e-20 104.0 67 76.1
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 1.5e-19 100.9 200 39.0
A01p37510 Brassica napus HOM05D006466 ORTHO05D008084 8.1e-18 95.1 53 86.8
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 1.8e-17 94.0 168 39.3
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 3.1e-17 93.2 68 69.1
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 5.8e-16 89.0 55 76.4
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 1.6e-13 80.9 50 76.0
AT2G03010 Arabidopsis thaliana HOM05D007773 ORTHO05D008084 1.3e-12 77.8 228 37.3
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 8.7e-12 75.1 160 36.9
HanXRQChr02g0051581 Helianthus annuus HOM05D006466 ORTHO05D008084 8.7e-12 75.1 101 47.5
Actinidia05202 Actinidia chinensis HOM05D006466 ORTHO05D008084 9.6e-11 71.6 102 44.1
Cre06.g300200 Chlamydomonas reinhardtii HOM05D006466 ORTHO05D008084 1.1e-06 58.2 204 31.4
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 1.4e-06 57.8 60 50.0
Sc22g0000810 Simmondsia chinensis HOM05D006466 ORTHO05D008084 4.2e-06 56.2 103 40.8
CBR_g29445 Chara braunii HOM05D006466 ORTHO05D008084 7.1e-06 55.5 52 55.8


User provided reference genes

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