Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 1.2e-95 353.2 182 100.0
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 2.5e-93 345.5 182 98.9
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 7.0e-88 327.4 184 92.9
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 7.0e-88 327.4 184 92.9
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 5.3e-80 301.2 182 85.7
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 2.0e-79 299.3 182 86.3
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 5.9e-79 297.7 182 84.1
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.0e-78 297.0 182 85.2
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 1.5e-77 293.1 182 83.5
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 1.9e-77 292.7 182 83.5
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 2.3e-75 285.8 182 81.9
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 1.7e-73 279.6 183 81.4
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 2.8e-73 278.9 207 73.4
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 4.8e-73 278.1 182 77.5
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 6.3e-73 277.7 182 82.4
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.4e-64 250.0 181 69.6
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 8.6e-62 240.7 182 74.7
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.6e-60 236.5 182 67.0
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 5.2e-51 204.9 180 61.7
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 5.2e-51 204.9 175 61.1
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 1.2e-50 203.8 173 61.3
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 2.0e-50 203.0 173 61.3
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 3.4e-50 202.2 180 58.9
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 4.4e-50 201.8 177 59.3
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 7.5e-50 201.1 174 61.5
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.7e-49 199.9 175 60.0
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 6.4e-49 198.0 175 61.1
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 8.3e-49 197.6 173 59.5
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.9e-48 196.4 179 59.2
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.6e-47 193.4 173 60.7
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 2.7e-47 192.6 172 60.5
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 7.8e-47 191.0 173 58.4
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 7.8e-47 191.0 173 58.4
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 1.0e-46 190.7 179 55.3
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 3.9e-46 188.7 180 56.1
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 4.3e-45 185.3 177 57.6
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 5.6e-45 184.9 168 57.7
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.2e-44 183.7 175 55.4
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 1.2e-44 183.7 165 58.2
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 2.1e-44 183.0 167 58.7
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 3.6e-44 182.2 177 55.4
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 4.7e-44 181.8 177 55.4
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 8.1e-44 181.0 179 54.7
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 1.8e-43 179.9 170 57.6
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 4.0e-43 178.7 177 54.2
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.0e-43 178.7 176 55.1
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 5.2e-43 178.3 179 54.7
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 8.9e-43 177.6 177 55.4
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.5e-42 176.8 165 57.0
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 2.0e-42 176.4 168 55.4
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 2.0e-42 176.4 165 57.0
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 2.6e-42 176.0 170 55.3
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 3.4e-42 175.6 165 57.0
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 3.4e-42 175.6 157 59.9
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 4.4e-42 175.3 169 56.2
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 5.8e-42 174.9 175 53.1
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 5.8e-42 174.9 176 54.0
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 9.8e-42 174.1 204 51.0
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.2e-41 172.9 167 55.1
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 2.9e-41 172.6 159 57.9
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 2.9e-41 172.6 159 57.9
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 2.9e-41 172.6 164 55.5
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 3.7e-41 172.2 177 54.2
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 6.4e-41 171.4 159 57.9
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 1.1e-40 170.6 168 55.4
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.1e-40 170.6 165 57.0
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 2.4e-40 169.5 159 57.2
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 4.1e-40 168.7 178 52.2
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 7.1e-40 167.9 174 53.4
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 7.1e-40 167.9 180 55.6
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 1.6e-39 166.8 130 64.6
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 3.5e-39 165.6 146 58.9
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 1.0e-38 164.1 162 54.3
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 1.7e-38 163.3 168 54.2
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 3.0e-38 162.5 167 52.7
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 3.9e-38 162.2 169 52.1
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 5.1e-38 161.8 167 52.1
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 5.1e-38 161.8 165 52.7
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 8.6e-38 161.0 170 52.4
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 4.3e-37 158.7 176 51.1
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 4.3e-37 158.7 176 51.1
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.6e-36 155.6 132 57.6
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 6.2e-36 154.8 170 53.5
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 1.8e-35 153.3 157 53.5
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 5.2e-35 151.8 165 50.9
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 6.8e-35 151.4 175 49.7
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.2e-34 150.6 160 53.8
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 1.2e-34 150.6 175 52.0
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 1.5e-34 150.2 161 52.2
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 1.5e-34 150.2 157 52.2
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.5e-34 150.2 169 52.1
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 2.6e-34 149.4 136 57.4
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 3.4e-34 149.1 163 50.3
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 3.4e-34 149.1 171 48.5
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 3.4e-34 149.1 156 53.2
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 4.4e-34 148.7 171 48.5
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 4.4e-34 148.7 179 47.5
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 9.9e-34 147.5 165 49.1
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 2.2e-33 146.4 140 59.3
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.2e-33 146.4 149 54.4
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 8.4e-33 144.4 163 50.9
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 1.1e-32 144.1 167 47.3
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.1e-32 144.1 175 45.1
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.4e-32 143.7 156 49.4
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.4e-32 143.7 214 43.0
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 2.4e-32 142.9 134 53.0
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 3.2e-32 142.5 156 50.0
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 7.1e-32 141.4 155 50.3
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 1.2e-31 140.6 176 50.0
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 1.2e-31 140.6 167 46.7
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 1.6e-31 140.2 195 44.6
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 1.0e-30 137.5 147 50.3
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 1.7e-30 136.7 141 54.6
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 6.6e-30 134.8 209 42.6
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 1.1e-29 134.0 136 52.9
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 5.6e-29 131.7 217 41.0
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 7.3e-29 131.3 154 48.7
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 1.6e-28 130.2 152 47.4
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 8.1e-28 127.9 161 45.3
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.1e-27 127.5 90 62.2
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 3.1e-27 125.9 151 48.3
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 6.9e-27 124.8 165 43.0
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.5e-26 123.6 160 46.9
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.5e-26 123.6 155 46.5
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 3.4e-26 122.5 275 32.7
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 4.9e-25 118.6 136 49.3
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 4.2e-24 115.5 112 54.5
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 6.6e-22 108.2 127 48.0
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 1.5e-21 107.1 85 54.1
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 4.3e-21 105.5 165 41.8
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.4e-19 100.5 177 39.5
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.8e-19 100.1 174 39.7
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.4e-19 99.8 76 56.6
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 4.0e-19 99.0 166 38.6
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 2.6e-18 96.3 100 49.0
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 5.8e-18 95.1 116 49.1
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 2.2e-17 93.2 89 61.8
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 1.6e-15 87.0 88 60.2
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 2.7e-15 86.3 119 47.9
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 3.5e-15 85.9 76 67.1
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 2.5e-13 79.7 139 38.8
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 3.3e-13 79.3 171 37.4
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 7.4e-13 78.2 82 59.8
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 1.3e-12 77.4 93 51.6
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 2.8e-12 76.3 77 59.7
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 2.4e-11 73.2 77 57.1
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 4.5e-10 68.9 116 44.0
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 3.5e-07 59.3 83 47.0
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 7.9e-07 58.2 112 41.1
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.8e-06 57.0 43 74.4
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 3.9e-06 55.8 65 50.8


User provided reference genes

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