Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p47440 Brassica napus HOM05D005318 ORTHO05D032321 1.1e-119 433.3 221 100.0
BolC7t45271H Brassica oleracea HOM05D005318 ORTHO05D032321 9.3e-95 350.5 173 100.0
A05p01930 Brassica napus HOM05D005318 ORTHO05D006791 2.1e-14 83.6 74 63.5
BolC4t21874H Brassica oleracea HOM05D005318 ORTHO05D006791 2.1e-14 83.6 74 63.5
BraA05t19191Z Brassica rapa HOM05D005318 ORTHO05D006791 2.1e-14 83.6 74 63.5
C04p02280 Brassica napus HOM05D005318 ORTHO05D006791 4.7e-14 82.4 74 62.2
Thhalv10016195m.g Eutrema salsugineum HOM05D005318 ORTHO05D006791 1.8e-13 80.5 74 60.8
Sp4g23170 Schrenkiella parvula HOM05D005318 ORTHO05D006791 1.8e-13 80.5 74 60.8
AL4G38790 Arabidopsis lyrata HOM05D005318 ORTHO05D006791 2.3e-13 80.1 74 60.8
AT2G40840 Arabidopsis thaliana HOM05D005318 ORTHO05D006791 2.3e-13 80.1 74 60.8
Carub.0004s2316 Capsella rubella HOM05D005318 ORTHO05D006791 2.3e-13 80.1 74 60.8
CARHR135960 Cardamine hirsuta HOM05D005318 ORTHO05D006791 2.3e-13 80.1 74 60.8
THA.LOC104803226 Tarenaya hassleriana HOM05D005318 ORTHO05D006791 6.8e-13 78.6 57 71.9
Actinidia37854 Actinidia chinensis HOM05D005318 ORTHO05D006791 8.9e-13 78.2 58 70.7
Aa31LG3G1260 Aethionema arabicum HOM05D005318 ORTHO05D006791 8.9e-13 78.2 75 58.7
Lalb_Chr14g0365451 Lupinus albus HOM05D005318 ORTHO05D006791 8.9e-13 78.2 58 69.0
Prupe.7G019400 Prunus persica HOM05D005318 ORTHO05D006791 8.9e-13 78.2 58 69.0
Hund24536 Selenicereus undatus HOM05D005318 ORTHO05D006791 8.9e-13 78.2 63 66.7
DCAR_013530 Daucus carota HOM05D005318 ORTHO05D006791 1.2e-12 77.8 58 69.0
Gohir.A06G109000 Gossypium hirsutum HOM05D005318 ORTHO05D006791 1.2e-12 77.8 86 53.5
Lj1g0025305 Lotus japonicus HOM05D005318 ORTHO05D006791 1.2e-12 77.8 74 58.1
MD00G1025200 Malus domestica HOM05D005318 ORTHO05D006791 1.2e-12 77.8 58 69.0
Potri.006G031700 Populus trichocarpa HOM05D005318 ORTHO05D006791 1.2e-12 77.8 58 69.0
Cfa019951 Carpinus fangiana HOM05D005318 ORTHO05D006791 1.5e-12 77.4 58 69.0
Gohir.D06G113100 Gossypium hirsutum HOM05D005318 ORTHO05D006791 1.5e-12 77.4 58 69.0
Gorai.010G128900 Gossypium raimondii HOM05D005318 ORTHO05D006791 1.5e-12 77.4 58 69.0
Medtr7g088740 Medicago truncatula HOM05D005318 ORTHO05D006791 1.5e-12 77.4 74 58.1
RhsimUnG0019600 Rhododendron simsii HOM05D005318 ORTHO05D006791 1.5e-12 77.4 58 69.0
vmacro07764 Vaccinium macrocarpon HOM05D005318 ORTHO05D006791 1.5e-12 77.4 58 69.0
GSVIVG01025810001 Vitis vinifera HOM05D005318 ORTHO05D006791 1.5e-12 77.4 58 69.0
Atru.chr1.1378 Acer truncatum HOM05D005318 ORTHO05D006791 2.0e-12 77.0 58 65.5
Ca_08698_v3 Cicer arietinum L. HOM05D005318 ORTHO05D006791 2.0e-12 77.0 74 58.1
COL.COLO4_33519 Corchorus olitorius HOM05D005318 ORTHO05D006791 2.0e-12 77.0 58 69.0
Haze_20288 Corylus avellana HOM05D005318 ORTHO05D006791 2.0e-12 77.0 58 69.0
Manes.08G162200 Manihot esculenta HOM05D005318 ORTHO05D006791 2.0e-12 77.0 58 67.2
Potri.016G028900 Populus trichocarpa HOM05D005318 ORTHO05D006791 2.0e-12 77.0 58 69.0
Sabra16G0033000 Salix brachista HOM05D005318 ORTHO05D006791 2.0e-12 77.0 58 69.0
Thecc.05G118400 Theobroma cacao HOM05D005318 ORTHO05D006791 2.0e-12 77.0 58 69.0
CANSAT64G0498 Cannabis sativa HOM05D005318 ORTHO05D006791 2.6e-12 76.6 58 67.2
Duzib128G1115 Durio zibethinus HOM05D005318 ORTHO05D006791 2.6e-12 76.6 58 69.0
Dinv26400 Davidia involucrata HOM05D005318 ORTHO05D006791 3.4e-12 76.3 58 67.2
PGR142G3097 Punica granatum HOM05D005318 ORTHO05D006791 3.4e-12 76.3 58 65.5
TPR.G23186 Trifolium pratense HOM05D005318 ORTHO05D006791 3.4e-12 76.3 74 58.1
TWI74G0513 Tripterygium wilfordii HOM05D005318 ORTHO05D006791 3.4e-12 76.3 58 69.0
TAR633G2118 Trochodendron aralioides HOM05D005318 ORTHO05D006791 3.4e-12 76.3 63 65.1
Cpa.g.sc92.60 Carica papaya HOM05D005318 ORTHO05D006791 4.4e-12 75.9 58 65.5
Ciclev10010989m.g Citrus clementina HOM05D005318 ORTHO05D006791 4.4e-12 75.9 58 65.5
Peaxi162Scf01017g00016 Petunia axillaris HOM05D005318 ORTHO05D006791 4.4e-12 75.9 58 67.2
Psat0s698g0160 Pisum sativum HOM05D005318 ORTHO05D006791 5.8e-12 75.5 130 41.5
Sabra06G0021100 Salix brachista HOM05D005318 ORTHO05D006791 5.8e-12 75.5 74 56.8
Sc19g0007930 Simmondsia chinensis HOM05D005318 ORTHO05D006791 5.8e-12 75.5 58 65.5
Ah.04g150540 Amaranthus hybridus HOM05D005318 ORTHO05D006791 7.6e-12 75.1 58 65.5
QL07p013739 Quercus lobata HOM05D005318 ORTHO05D006791 7.6e-12 75.1 58 65.5
ClCG04G005890 Citrullus lanatus HOM05D005318 ORTHO05D006791 9.9e-12 74.7 58 65.5
MELO3C019135.2 Cucumis melo HOM05D005318 ORTHO05D006791 9.9e-12 74.7 58 65.5
CsaV3_4G029230 Cucumis sativus L. HOM05D005318 ORTHO05D006791 9.9e-12 74.7 58 65.5
Oeu064748.1 Olea europaea HOM05D005318 ORTHO05D006791 9.9e-12 74.7 58 65.5
Oeu064749.1 Olea europaea HOM05D005318 ORTHO05D006791 9.9e-12 74.7 58 65.5
Aqoxy1G00050 Aquilegia oxysepala HOM05D005318 ORTHO05D006791 1.7e-11 73.9 58 63.8
CiPaw.09G051900 Carya illinoinensis HOM05D005318 ORTHO05D006791 1.7e-11 73.9 70 57.1
PSO339G3620 Papaver somniferum HOM05D005318 ORTHO05D006791 1.7e-11 73.9 74 56.8
PSO384G1877 Papaver somniferum HOM05D005318 ORTHO05D006791 1.7e-11 73.9 74 56.8
Phvul.001G117700 Phaseolus vulgaris HOM05D005318 ORTHO05D006791 1.7e-11 73.9 58 67.2
AUR62018414 Chenopodium quinoa HOM05D005318 ORTHO05D006791 2.2e-11 73.6 58 62.1
MBI19_g45589_MAGBIO Magnolia biondii HOM05D005318 ORTHO05D006791 2.2e-11 73.6 58 65.5
RcHm_v2.0_Chr3g0494731 Rosa chinensis HOM05D005318 ORTHO05D006791 2.2e-11 73.6 58 65.5
arahy.Tifrunner.gnm1.ann1.HZCB2X Arachis hypogaea HOM05D005318 ORTHO05D006791 2.9e-11 73.2 57 66.7
arahy.Tifrunner.gnm1.ann1.PFNU0X Arachis hypogaea HOM05D005318 ORTHO05D006791 2.9e-11 73.2 57 66.7
EL10Ac3g07301 Beta vulgaris HOM05D005318 ORTHO05D006791 2.9e-11 73.2 74 52.7
Lj2A411T33 Lonicera japonica HOM05D005318 ORTHO05D006791 2.9e-11 73.2 58 65.5
Eucgr.K01679 Eucalyptus grandis HOM05D005318 ORTHO05D006791 3.8e-11 72.8 58 62.1
Nitab4.5_0001388g0020 Nicotiana tabacum HOM05D005318 ORTHO05D006791 3.8e-11 72.8 58 65.5
Cc06_g21270 Coffea canephora HOM05D005318 ORTHO05D006791 4.9e-11 72.4 58 62.1
AUR62021029 Chenopodium quinoa HOM05D005318 ORTHO05D006791 6.4e-11 72.0 74 52.7
FvH4_1g29260 Fragaria vesca HOM05D005318 ORTHO05D006791 6.4e-11 72.0 58 65.5
FAN19G2285 Fragaria x ananassa HOM05D005318 ORTHO05D006791 6.4e-11 72.0 58 65.5
Glyma.03G121100 Glycine max HOM05D005318 ORTHO05D006791 6.4e-11 72.0 58 65.5
Glyma.19G125800 Glycine max HOM05D005318 ORTHO05D006791 6.4e-11 72.0 58 65.5
Sed0003650 Sechium edule HOM05D005318 ORTHO05D006791 6.4e-11 72.0 58 62.1
Nitab4.5_0000092g0020 Nicotiana tabacum HOM05D005318 ORTHO05D006791 8.4e-11 71.6 58 63.8
Os07g0662900 Oryza sativa ssp. japonica HOM05D005318 ORTHO05D006791 8.4e-11 71.6 78 53.8
Solyc02g020980.4 Solanum lycopersicum HOM05D005318 ORTHO05D006791 8.4e-11 71.6 58 63.8
Sopen02g004490 Solanum pennellii HOM05D005318 ORTHO05D006791 8.4e-11 71.6 58 63.8
Sopen02g004780 Solanum pennellii HOM05D005318 ORTHO05D006791 8.4e-11 71.6 58 63.8
SGA_v2.0_scaffold240G44129 Striga asiatica HOM05D005318 ORTHO05D006791 8.4e-11 71.6 59 61.0
HPP92_014255 Vanilla planifolia HOM05D005318 ORTHO05D006791 8.4e-11 71.6 56 66.1
CSS0014915 Camellia sinensis var. sinensis HOM05D005318 ORTHO05D006791 1.1e-10 71.2 58 63.8
FAN23G1756 Fragaria x ananassa HOM05D005318 ORTHO05D006791 1.1e-10 71.2 58 65.5
CDE08G1108 Ceratophyllum demersum HOM05D005318 ORTHO05D006791 1.4e-10 70.9 57 64.9
Lsat_1_v5_gn_8_83900 Lactuca sativa HOM05D005318 ORTHO05D006791 1.4e-10 70.9 74 52.7
HanXRQChr06g0177301 Helianthus annuus HOM05D005318 ORTHO05D006791 1.9e-10 70.5 58 60.3
ATR0782G050 Amborella trichopoda HOM05D005318 ORTHO05D006791 2.4e-10 70.1 58 62.1
FAN28G1591 Fragaria x ananassa HOM05D005318 ORTHO05D006791 2.4e-10 70.1 73 54.8
CAN.G39.12 Capsicum annuum HOM05D005318 ORTHO05D006791 3.2e-10 69.7 58 63.8
ECA236G3220 Erigeron canadensis HOM05D005318 ORTHO05D006791 4.1e-10 69.3 58 60.3
FAN06G1462 Fragaria x ananassa HOM05D005318 ORTHO05D006791 7.1e-10 68.6 60 60.0
FAN26G2899 Fragaria x ananassa HOM05D005318 ORTHO05D006791 9.2e-10 68.2 58 63.8
unitig_736.g22282 Utricularia gibba HOM05D005318 ORTHO05D006791 2.1e-09 67.0 55 61.8
Migut.K00161 Erythranthe guttata HOM05D005318 ORTHO05D006791 7.8e-09 65.1 58 55.2
Pp3c15_25660 Physcomitrium patens HOM05D005318 ORTHO05D006791 1.7e-08 63.9 78 52.6
BcaC06g33443 Brassica carinata HOM05D005318 ORTHO05D032321 2.3e-08 63.5 30 100.0
SMO203G0025 Selaginella moellendorffii HOM05D005318 ORTHO05D006791 2.3e-08 63.5 56 58.9
SMO327G0045 Selaginella moellendorffii HOM05D005318 ORTHO05D006791 2.3e-08 63.5 56 58.9
BcaC02g12738 Brassica carinata HOM05D005318 ORTHO05D006791 3.0e-08 63.2 44 75.0
AagrBONN_evm.TU.Sc2ySwM_344.1228 Anthoceros agrestis HOM05D005318 ORTHO05D006791 5.1e-08 62.4 72 50.0
Mapoly0011s0190 Marchantia polymorpha HOM05D005318 ORTHO05D006791 3.3e-07 59.7 70 50.0
CBR_g6687 Chara braunii HOM05D005318 ORTHO05D006791 4.7e-06 55.8 78 43.6


User provided reference genes

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