Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 6.1e-135 484.2 249 100.0
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 3.7e-100 368.6 188 100.0
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 6.9e-46 188.3 138 75.4
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-45 187.6 137 75.9
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 2.0e-45 186.8 137 75.2
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 3.4e-45 186.0 125 79.2
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 8.4e-44 181.4 138 70.3
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 7.1e-43 178.3 137 73.0
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 7.9e-42 174.9 155 63.2
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 2.3e-41 173.3 136 68.4
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 2.3e-41 173.3 136 68.4
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 3.9e-41 172.6 126 71.4
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 3.9e-41 172.6 126 71.4
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 2.5e-40 169.9 100 87.0
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 4.3e-40 169.1 127 71.7
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 4.3e-40 169.1 123 71.5
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 9.7e-40 167.9 123 70.7
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 1.8e-38 163.7 148 60.8
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 5.3e-38 162.2 106 76.4
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 9.0e-38 161.4 101 77.2
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.2e-37 161.0 150 60.7
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 6.5e-36 155.2 112 70.5
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 1.9e-32 143.7 95 83.2
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.8e-31 139.8 90 74.4
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 1.4e-30 137.5 101 66.3
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.2e-29 134.4 114 60.5
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 5.9e-29 132.1 92 67.4
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 2.9e-28 129.8 116 56.0
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 3.8e-28 129.4 101 63.4
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.1e-27 127.9 106 60.4
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 1.4e-27 127.5 92 66.3
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 1.9e-27 127.1 114 58.8
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 2.5e-27 126.7 133 49.6
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 7.2e-27 125.2 92 64.1
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 9.4e-27 124.8 99 59.6
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 1.2e-26 124.4 119 50.4
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 1.2e-26 124.4 119 50.4
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 1.2e-26 124.4 69 95.7
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 1.2e-26 124.4 69 94.2
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.6e-26 124.0 99 58.6
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.1e-26 123.6 118 53.4
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 2.1e-26 123.6 103 59.2
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 2.7e-26 123.2 69 92.8
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 2.7e-26 123.2 120 49.2
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 2.7e-26 123.2 100 56.0
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 4.7e-26 122.5 69 92.8
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 4.7e-26 122.5 69 92.8
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 7.9e-26 121.7 106 58.5
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.0e-25 121.3 124 51.6
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.0e-25 121.3 124 51.6
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 1.0e-25 121.3 92 60.9
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 1.4e-25 120.9 100 55.0
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 1.8e-25 120.6 117 50.4
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.8e-25 120.6 92 62.0
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.3e-25 120.2 92 63.0
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 2.3e-25 120.2 92 59.8
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 2.3e-25 120.2 92 63.0
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 3.0e-25 119.8 92 60.9
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.0e-25 119.8 94 60.6
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 5.1e-25 119.0 92 60.9
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 5.1e-25 119.0 119 51.3
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 5.1e-25 119.0 92 62.0
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 5.1e-25 119.0 92 62.0
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 5.1e-25 119.0 92 59.8
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 6.7e-25 118.6 108 52.8
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 6.7e-25 118.6 92 60.9
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 6.7e-25 118.6 92 60.9
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 6.7e-25 118.6 116 51.7
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 8.8e-25 118.2 92 59.8
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 8.8e-25 118.2 119 55.5
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 8.8e-25 118.2 87 66.7
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 1.1e-24 117.9 92 60.9
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.1e-24 117.9 95 61.1
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 1.5e-24 117.5 106 54.7
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.5e-24 117.5 113 53.1
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 2.0e-24 117.1 108 52.8
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 2.0e-24 117.1 92 58.7
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 2.6e-24 116.7 93 62.4
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 2.6e-24 116.7 69 91.3
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.3e-24 116.3 113 53.1
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 3.3e-24 116.3 92 59.8
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 4.4e-24 115.9 92 58.7
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 5.7e-24 115.5 102 53.9
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.7e-24 115.5 92 57.6
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 5.7e-24 115.5 92 57.6
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 5.7e-24 115.5 108 52.8
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 5.7e-24 115.5 92 59.8
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 7.4e-24 115.2 169 41.4
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 7.4e-24 115.2 92 59.8
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 9.7e-24 114.8 92 57.6
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 9.7e-24 114.8 119 48.7
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 9.7e-24 114.8 100 57.0
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 1.3e-23 114.4 93 61.3
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 1.3e-23 114.4 92 57.6
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.7e-23 114.0 92 58.7
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.2e-23 113.6 92 58.7
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 2.8e-23 113.2 92 55.4
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 4.8e-23 112.5 95 52.6
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 6.3e-23 112.1 114 50.9
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 8.2e-23 111.7 92 55.4
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.8e-22 110.5 101 54.5
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 1.8e-22 110.5 125 48.0
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 1.8e-22 110.5 154 43.5
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 2.4e-22 110.2 92 58.7
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.4e-22 110.2 106 54.7
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 2.4e-22 110.2 95 53.7
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.1e-22 109.8 89 59.6
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.1e-22 109.8 101 54.5
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 4.1e-22 109.4 118 49.2
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 5.3e-22 109.0 95 54.7
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 7.0e-22 108.6 122 55.7
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.2e-21 107.8 95 51.6
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.2e-21 107.8 95 51.6
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.5e-21 107.5 95 51.6
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.5e-21 107.5 101 53.5
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.0e-21 107.1 102 52.9
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 2.6e-21 106.7 114 49.1
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 3.4e-21 106.3 69 82.6
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 4.5e-21 105.9 92 53.3
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 4.5e-21 105.9 96 53.1
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.3e-20 104.4 101 50.5
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.3e-20 104.4 89 56.2
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 3.8e-20 102.8 106 50.0
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 5.0e-20 102.4 114 50.0
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 5.0e-20 102.4 111 46.8
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 6.5e-20 102.1 92 48.9
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 1.1e-19 101.3 106 49.1
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 1.4e-19 100.9 90 53.3
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 4.2e-19 99.4 97 46.4
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.2e-18 97.8 95 49.5
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 4.7e-18 95.9 109 48.6
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 4.7e-18 95.9 94 46.8
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 5.2e-17 92.4 69 73.9
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 5.2e-17 92.4 120 39.2
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 8.8e-17 91.7 69 71.0
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 7.4e-16 88.6 69 75.4
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 1.3e-15 87.8 78 69.2
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 2.2e-15 87.0 69 69.6
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 4.8e-15 85.9 82 48.8
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.4e-14 84.3 69 55.1
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 9.1e-14 81.6 68 67.6
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.6e-13 80.9 68 63.2
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 2.0e-13 80.5 69 60.9
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 2.0e-13 80.5 112 43.8
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 1.3e-12 77.8 100 47.0
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 2.9e-12 76.6 93 39.8
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 4.2e-11 72.8 90 38.9
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 5.5e-11 72.4 144 41.0
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 5.5e-11 72.4 59 71.2
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 9.4e-11 71.6 93 37.6
A08p37240 Brassica napus HOM05D005116 ORTHO05D005937 1.6e-10 70.9 89 51.7
BraA08t35622Z Brassica rapa HOM05D005116 ORTHO05D005937 1.6e-10 70.9 89 51.7
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 2.1e-10 70.5 76 55.3
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 3.6e-10 69.7 67 58.2
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 6.1e-10 68.9 91 41.8
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 1.0e-09 68.2 75 56.0
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.0e-09 68.2 105 41.0
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.4e-09 67.8 67 47.8
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.3e-09 67.0 70 48.6
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 4.0e-09 66.2 123 39.0
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 5.2e-09 65.9 66 62.1
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 8.8e-09 65.1 64 57.8
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.5e-08 64.3 73 50.7
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 1.5e-08 64.3 65 46.2
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.0e-08 63.9 90 34.4
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 4.4e-08 62.8 60 61.7
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 5.7e-08 62.4 78 51.3
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 7.5e-08 62.0 63 58.7
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 7.5e-08 62.0 55 63.6
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 9.7e-08 61.6 75 46.7
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 9.7e-08 61.6 78 51.3
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 1.3e-07 61.2 79 49.4
C08p00760 Brassica napus HOM05D005116 ORTHO05D031782 1.3e-07 61.2 60 60.0
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 2.2e-07 60.5 78 50.0
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 2.2e-07 60.5 74 48.6
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 2.8e-07 60.1 74 50.0
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 4.8e-07 59.3 72 48.6
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 6.3e-07 58.9 98 41.8
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 6.3e-07 58.9 47 63.8
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 8.2e-07 58.5 75 48.0
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.1e-06 58.2 102 42.2
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.1e-06 58.2 47 68.1
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.4e-06 57.8 71 53.5
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 1.8e-06 57.4 83 44.6
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.8e-06 57.4 91 33.0
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 2.4e-06 57.0 83 42.2
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 3.1e-06 56.6 97 36.1


User provided reference genes

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