Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1529.2 748 100.0
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1508.8 743 99.5
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1377.5 697 94.8
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1376.3 719 94.9
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1368.2 696 94.3
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1356.7 696 93.4
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1354.0 695 93.2
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1352.4 698 93.1
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1346.3 698 92.7
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1338.6 697 91.7
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 0.0e+00 1266.1 695 90.8
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1261.5 696 86.4
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1183.7 694 79.7
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1179.9 694 79.4
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1172.9 694 78.2
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1166.0 694 78.5
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1165.2 694 78.7
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1161.7 691 78.6
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1160.2 694 78.1
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1159.8 694 78.1
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1157.1 695 77.8
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1150.6 694 76.8
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1149.8 694 77.2
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1149.0 694 77.2
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1148.3 697 77.3
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1147.9 694 77.5
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1146.7 694 77.5
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1142.9 697 76.6
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1141.3 708 75.4
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1140.9 695 77.0
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1139.4 698 75.9
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1139.0 695 76.8
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1136.7 699 76.4
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1134.4 694 76.2
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1132.1 698 75.6
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1131.3 700 75.7
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1130.5 694 76.8
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1129.8 695 76.1
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1129.4 693 76.2
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1129.0 693 76.3
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1128.6 695 76.0
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1128.2 694 76.5
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1128.2 694 76.5
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1127.9 697 74.7
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1127.5 696 75.1
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1127.5 694 76.7
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1127.1 691 75.3
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1127.1 694 76.1
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1126.3 694 76.2
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1125.2 695 76.4
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1124.8 697 75.6
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1121.7 695 75.7
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1121.7 721 73.8
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1119.8 694 76.4
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1119.8 695 75.5
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1119.4 694 75.2
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1119.4 694 75.8
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1118.6 694 75.4
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1118.2 695 75.4
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1117.8 693 75.2
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1116.3 696 74.4
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1116.3 693 75.0
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1116.3 697 75.0
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1115.9 694 75.1
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1115.9 694 74.5
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1115.9 694 75.6
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1115.5 673 77.1
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1114.4 694 74.2
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1114.4 694 76.1
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1111.7 694 75.5
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1110.9 694 74.1
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1107.4 695 74.5
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1106.7 695 75.3
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1105.1 696 74.9
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1104.0 704 73.9
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1100.9 695 74.0
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1098.6 695 74.1
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1094.7 694 74.6
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1085.5 694 73.3
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1082.8 692 73.7
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1075.1 718 71.3
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 2.0e-311 1072.0 695 72.8
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 8.6e-310 1066.6 694 73.2
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.5e-309 1065.8 693 72.6
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 1.5e-309 1065.8 696 72.3
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 5.6e-309 1063.9 747 68.8
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 1.1e-307 1059.7 740 69.2
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 1.8e-307 1058.9 735 69.3
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 3.1e-307 1058.1 696 71.1
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 2.6e-306 1055.0 696 72.1
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 1.1e-304 1049.7 647 75.3
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 5.4e-304 1047.3 677 71.9
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 1.1e-301 1039.6 697 70.3
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 9.6e-301 1036.6 695 71.9
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.1e-299 1033.1 676 71.9
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 1.2e-298 1029.6 698 71.8
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 2.0e-298 1028.9 694 72.0
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 7.6e-298 1026.9 676 71.2
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 5.4e-296 1020.8 611 77.7
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 8.1e-292 1006.9 703 68.3
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 4.3e-285 984.6 703 67.6
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.1e-279 965.7 581 77.1
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 2.9e-265 918.7 638 69.3
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 8.2e-252 874.0 581 70.4
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 9.1e-251 870.5 708 62.7
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 5.0e-249 864.8 540 75.9
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 4.5e-242 841.6 699 58.7
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 2.7e-223 779.2 562 66.5
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 1.4e-222 776.9 698 54.7
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 6.8e-222 774.6 703 54.6
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 8.3e-220 767.7 701 54.6
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 8.3e-220 767.7 701 54.6
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 4.5e-218 761.9 711 56.4
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.2e-215 753.8 704 53.6
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.6e-205 719.5 472 72.5
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.8e-175 619.8 386 74.6
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 3.3e-168 596.3 504 65.7
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 2.2e-164 583.6 725 44.0
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 5.1e-145 519.2 377 65.8
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 1.4e-110 404.8 768 35.9
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 8.3e-103 379.0 823 34.3
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 4.3e-99 366.7 248 69.0
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.8e-94 351.3 252 72.6
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 4.1e-94 350.1 323 55.1
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 8.6e-92 342.4 268 61.6
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 2.4e-78 297.7 235 69.4
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 2.2e-71 274.6 183 71.0
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 3.8e-71 273.9 166 77.7
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 3.2e-70 270.8 242 57.4
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 9.0e-65 252.7 193 62.7
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.0e-60 239.2 622 31.0
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 5.3e-57 226.9 138 86.2
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.4e-49 201.4 124 72.6
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 8.7e-44 183.0 97 90.7
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 5.8e-40 170.2 139 61.9
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.3e-31 142.5 232 39.7
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 1.1e-30 139.4 75 84.0
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 6.1e-29 133.7 76 78.9
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 3.4e-24 117.9 76 64.5
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 3.4e-16 91.3 90 52.2
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 5.0e-15 87.4 85 50.6
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 4.2e-14 84.3 50 80.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 3.6e-13 81.3 50 74.0


User provided reference genes

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