Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p45310 Brassica napus HOM05D013628 ORTHO05D015917 5.4e-131 471.1 252 100.0
BolC7t45054H Brassica oleracea HOM05D013628 ORTHO05D015917 4.4e-125 451.4 253 96.8
A03p47220 Brassica napus HOM05D013628 ORTHO05D015917 4.1e-123 444.9 252 95.2
BraA03t13849Z Brassica rapa HOM05D013628 ORTHO05D015917 4.1e-123 444.9 252 95.2
Sp2g24820 Schrenkiella parvula HOM05D013628 ORTHO05D015917 6.3e-47 191.8 225 60.0
Thhalv10005330m.g Eutrema salsugineum HOM05D013628 ORTHO05D015917 7.7e-45 184.9 249 53.4
Carub.0008s2231 Capsella rubella HOM05D013628 ORTHO05D015917 1.1e-38 164.5 232 52.2
AT5G61610 Arabidopsis thaliana HOM05D013628 ORTHO05D015917 4.7e-34 149.1 304 41.8
AL8G38350 Arabidopsis lyrata HOM05D013628 ORTHO05D015917 2.8e-31 139.8 323 40.9
CARHR275410 Cardamine hirsuta HOM05D013628 ORTHO05D015917 1.2e-13 81.3 66 63.6
CARHR275400 Cardamine hirsuta HOM05D013628 ORTHO05D015917 3.0e-12 76.6 129 48.1
Thhalv10014500m.g Eutrema salsugineum HOM05D000805 ORTHO05D012592 4.7e-10 69.3 84 47.6
A03p03360 Brassica napus HOM05D000805 ORTHO05D000624 1.4e-09 67.8 82 47.6
BolC3t12915H Brassica oleracea HOM05D000805 ORTHO05D000624 1.4e-09 67.8 82 47.6
BraA03t09687Z Brassica rapa HOM05D000805 ORTHO05D000624 1.4e-09 67.8 82 47.6
C03p03800 Brassica napus HOM05D000805 ORTHO05D000624 1.8e-09 67.4 82 47.6
CARHR205600 Cardamine hirsuta HOM05D007846 ORTHO05D012592 3.1e-09 66.6 84 47.6
BcaB01g06049 Brassica carinata HOM05D007846 ORTHO05D000624 5.2e-09 65.9 77 49.4
Thhalv10015090m.g Eutrema salsugineum HOM05D007846 ORTHO05D000624 6.8e-09 65.5 83 45.8
TAR636G2754 Trochodendron aralioides HOM05D000805 ORTHO05D000624 6.8e-09 65.5 78 50.0
Thhalv10015089m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 8.9e-09 65.1 73 49.3
Carub.0008s1125 Capsella rubella HOM05D000805 ORTHO05D000624 1.2e-08 64.7 95 45.3
AL8G25490 Arabidopsis lyrata HOM05D000805 ORTHO05D000624 1.5e-08 64.3 95 45.3
THA.LOC104825056 Tarenaya hassleriana HOM05D000805 ORTHO05D000624 1.5e-08 64.3 73 53.4
Sp6g13410 Schrenkiella parvula HOM05D000805 ORTHO05D000624 2.0e-08 63.9 76 50.0
Aa31LG7G10490 Aethionema arabicum HOM05D000805 ORTHO05D000624 2.6e-08 63.5 79 45.6
AT5G51210 Arabidopsis thaliana HOM05D000805 ORTHO05D000624 2.6e-08 63.5 75 49.3
THA.LOC104811538 Tarenaya hassleriana HOM05D000805 ORTHO05D000624 3.4e-08 63.2 81 46.9
Sp6g35320 Schrenkiella parvula HOM05D000805 ORTHO05D000624 4.4e-08 62.8 73 47.9
Carub.0006s0653 Capsella rubella HOM05D007846 ORTHO05D000624 5.8e-08 62.4 83 42.2
Sp6g35300 Schrenkiella parvula HOM05D000805 ORTHO05D012592 5.8e-08 62.4 84 46.4
BcaB08g35479 Brassica carinata HOM05D000805 ORTHO05D000624 7.6e-08 62.0 75 48.0
A10p07910 Brassica napus HOM05D000805 ORTHO05D000624 7.6e-08 62.0 75 48.0
BraA01t01594Z Brassica rapa HOM05D000805 ORTHO05D000624 7.6e-08 62.0 79 44.3
BraSC35t46007Z Brassica rapa HOM05D000805 ORTHO05D000624 7.6e-08 62.0 75 48.0
Cpa.g.sc13.249 Carica papaya HOM05D000805 ORTHO05D000624 7.6e-08 62.0 73 49.3
TAR629G3054 Trochodendron aralioides HOM05D000805 ORTHO05D000624 7.6e-08 62.0 78 50.0
Thhalv10015579m.g Eutrema salsugineum HOM05D000805 ORTHO05D196068 9.9e-08 61.6 84 44.0
Thhalv10015754m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 9.9e-08 61.6 75 49.3
FvH4_7g26900 Fragaria vesca HOM05D000805 ORTHO05D000624 9.9e-08 61.6 73 50.7
FAN01G1750 Fragaria x ananassa HOM05D000805 ORTHO05D000624 9.9e-08 61.6 63 52.4
FAN03G1505 Fragaria x ananassa HOM05D000805 ORTHO05D000624 9.9e-08 61.6 73 50.7
FAN06G5020 Fragaria x ananassa HOM05D000805 ORTHO05D000624 9.9e-08 61.6 73 50.7
BcaB03g12456 Brassica carinata HOM05D000805 ORTHO05D000624 1.3e-07 61.2 79 45.6
BcaC07g38176 Brassica carinata HOM05D000805 ORTHO05D000624 1.3e-07 61.2 79 45.6
BcaC09g50805 Brassica carinata HOM05D000805 ORTHO05D000624 1.3e-07 61.2 79 44.3
BcaNung04003 Brassica carinata HOM05D000805 ORTHO05D000624 1.3e-07 61.2 79 44.3
A01p16390 Brassica napus HOM05D000805 ORTHO05D000624 1.3e-07 61.2 79 44.3
A08p21280 Brassica napus HOM05D000805 ORTHO05D000624 1.3e-07 61.2 79 45.6
C01p20540 Brassica napus HOM05D000805 ORTHO05D000624 1.3e-07 61.2 79 44.3
BolC1t01985H Brassica oleracea HOM05D000805 ORTHO05D000624 1.3e-07 61.2 79 44.3
BolC8t48598H Brassica oleracea HOM05D000805 ORTHO05D000624 1.3e-07 61.2 79 45.6
BraA08t34077Z Brassica rapa HOM05D000805 ORTHO05D000624 1.3e-07 61.2 79 45.6
CARHR256810 Cardamine hirsuta HOM05D000805 ORTHO05D000624 1.3e-07 61.2 96 41.7
RcHm_v2.0_Chr1g0373571 Rosa chinensis HOM05D000805 ORTHO05D000624 1.3e-07 61.2 73 49.3
Sp6g35310 Schrenkiella parvula HOM05D007846 ORTHO05D000624 1.3e-07 61.2 83 42.2
Aa31LG3G7740 Aethionema arabicum HOM05D000805 ORTHO05D000624 1.7e-07 60.8 73 49.3
ClCG07G017010 Citrullus lanatus HOM05D000805 ORTHO05D000624 1.7e-07 60.8 78 44.9
MELO3C017642.2 Cucumis melo HOM05D000805 ORTHO05D000624 1.7e-07 60.8 78 44.9
CsaV3_4G004230 Cucumis sativus L. HOM05D000805 ORTHO05D000624 1.7e-07 60.8 78 44.9
BcaC04g20722 Brassica carinata HOM05D000805 ORTHO05D000624 2.2e-07 60.5 75 46.7
BcaC06g32835 Brassica carinata HOM05D000805 ORTHO05D000624 2.2e-07 60.5 79 44.3
A03p55790 Brassica napus HOM05D000805 ORTHO05D000624 2.2e-07 60.5 79 44.3
C02p03190 Brassica napus HOM05D000805 ORTHO05D012592 2.2e-07 60.5 84 42.9
C07p54070 Brassica napus HOM05D000805 ORTHO05D000624 2.2e-07 60.5 79 44.3
C09p39880 Brassica napus HOM05D000805 ORTHO05D000624 2.2e-07 60.5 75 46.7
BolC2t06281H Brassica oleracea HOM05D000805 ORTHO05D012592 2.2e-07 60.5 84 42.9
BolC7t45893H Brassica oleracea HOM05D000805 ORTHO05D000624 2.2e-07 60.5 79 44.3
BolC9t56887H Brassica oleracea HOM05D000805 ORTHO05D000624 2.2e-07 60.5 75 46.7
BraA03t14647Z Brassica rapa HOM05D000805 ORTHO05D000624 2.2e-07 60.5 79 44.3
Cfa013591 Carpinus fangiana HOM05D000805 ORTHO05D000624 2.2e-07 60.5 73 45.2
Peaxi162Scf00271g00056 Petunia axillaris HOM05D000805 ORTHO05D000624 2.2e-07 60.5 105 38.1
vmacro09924 Vaccinium macrocarpon HOM05D000805 ORTHO05D000624 2.2e-07 60.5 102 40.2
Ah.07g207520 Amaranthus hybridus HOM05D000805 ORTHO05D000624 2.9e-07 60.1 73 50.7
CANSAT56G2548 Cannabis sativa HOM05D000805 ORTHO05D000624 2.9e-07 60.1 78 46.2
CARHR232530 Cardamine hirsuta HOM05D000805 ORTHO05D000624 2.9e-07 60.1 79 45.6
CiPaw.07G184600 Carya illinoinensis HOM05D000805 ORTHO05D000624 2.9e-07 60.1 73 46.6
COL.COLO4_37336 Corchorus olitorius HOM05D000805 ORTHO05D000624 2.9e-07 60.1 72 48.6
Haze_22208 Corylus avellana HOM05D000805 ORTHO05D000624 2.9e-07 60.1 73 45.2
Nitab4.5_0000600g0090 Nicotiana tabacum HOM05D000805 ORTHO05D000624 2.9e-07 60.1 98 41.8
TWI14G1264 Tripterygium wilfordii HOM05D000805 ORTHO05D000624 2.9e-07 60.1 80 42.5
AL7G28010 Arabidopsis lyrata HOM05D000805 ORTHO05D000624 3.7e-07 59.7 79 44.3
AT4G25140 Arabidopsis thaliana HOM05D000805 ORTHO05D000624 3.7e-07 59.7 79 44.3
Carub.0007s1589 Capsella rubella HOM05D000805 ORTHO05D000624 3.7e-07 59.7 79 44.3
Ciclev10006168m.g Citrus clementina HOM05D000805 ORTHO05D000624 3.7e-07 59.7 73 47.9
Thhalv10027215m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 3.7e-07 59.7 79 44.3
Lj5g0000097 Lotus japonicus HOM05D000805 ORTHO05D000624 3.7e-07 59.7 78 48.7
CiPaw.08G042000 Carya illinoinensis HOM05D000805 ORTHO05D000624 4.9e-07 59.3 73 43.8
FAN10G3456 Fragaria x ananassa HOM05D000805 ORTHO05D000624 4.9e-07 59.3 73 47.9
Medtr1g090250 Medicago truncatula HOM05D000805 ORTHO05D000624 4.9e-07 59.3 78 47.4
PGR142G3461 Punica granatum HOM05D000805 ORTHO05D000624 4.9e-07 59.3 92 42.4
Atru.chr1.921 Acer truncatum HOM05D000805 ORTHO05D000624 6.4e-07 58.9 109 33.9
BcaB05g21609 Brassica carinata HOM05D000805 ORTHO05D012592 6.4e-07 58.9 84 42.9
C02p03200 Brassica napus HOM05D007846 ORTHO05D012592 6.4e-07 58.9 84 41.7
BolC2t06282H Brassica oleracea HOM05D007846 ORTHO05D012592 6.4e-07 58.9 84 41.7
Eucgr.K00124 Eucalyptus grandis HOM05D000805 ORTHO05D000624 6.4e-07 58.9 78 44.9
SGA_v2.0_scaffold56G19908 Striga asiatica HOM05D000805 ORTHO05D000624 6.4e-07 58.9 79 43.0
Aqoxy7G00852 Aquilegia oxysepala HOM05D000805 ORTHO05D000624 8.3e-07 58.5 65 47.7
BraA02t04923Z Brassica rapa HOM05D000805 ORTHO05D012592 8.3e-07 58.5 83 43.4
DCAR_020171 Daucus carota HOM05D000805 ORTHO05D000624 8.3e-07 58.5 63 47.6
Os04g0546500 Oryza sativa ssp. japonica HOM05D000805 ORTHO05D000624 8.3e-07 58.5 91 38.5
Sp7g23140 Schrenkiella parvula HOM05D000805 ORTHO05D000624 8.3e-07 58.5 79 43.0
Zm00001eb074940 Zea mays HOM05D000805 ORTHO05D000624 8.3e-07 58.5 82 41.5
Ah.13g065760 Amaranthus hybridus HOM05D000805 ORTHO05D000624 1.1e-06 58.2 73 49.3
ECA233G2751 Erigeron canadensis HOM05D000805 ORTHO05D000624 1.1e-06 58.2 73 45.2
Rhsim03G0160900 Rhododendron simsii HOM05D000805 ORTHO05D000624 1.1e-06 58.2 84 40.5
AL6G17870 Arabidopsis lyrata HOM05D007846 ORTHO05D012592 1.4e-06 57.8 84 41.7
BolC3t12917H Brassica oleracea HOM05D000805 ORTHO05D012592 1.4e-06 57.8 78 44.9
CARHR205610 Cardamine hirsuta HOM05D007846 ORTHO05D000624 1.4e-06 57.8 83 38.6
ClCG01G004720 Citrullus lanatus HOM05D000805 ORTHO05D000624 1.4e-06 57.8 73 42.5
Dinv06599 Davidia involucrata HOM05D000805 ORTHO05D000624 1.4e-06 57.8 73 47.9
Rhsim09G0189400 Rhododendron simsii HOM05D000805 ORTHO05D000624 1.4e-06 57.8 102 38.2
AL6G17910 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 1.9e-06 57.4 66 50.0
BraA02t04924Z Brassica rapa HOM05D007846 ORTHO05D012592 1.9e-06 57.4 84 41.7
Carub.0006s0654 Capsella rubella HOM05D000805 ORTHO05D012592 1.9e-06 57.4 79 41.8
Duzib205G2062 Durio zibethinus HOM05D000805 ORTHO05D000624 1.9e-06 57.4 108 36.1
HanXRQChr05g0138621 Helianthus annuus HOM05D000805 ORTHO05D000624 1.9e-06 57.4 73 43.8
Lalb_Chr21g0312721 Lupinus albus HOM05D000805 ORTHO05D000624 1.9e-06 57.4 76 47.4
Manes.06G131000 Manihot esculenta HOM05D000805 ORTHO05D000624 2.4e-06 57.0 92 38.0
Nitab4.5_0010435g0010 Nicotiana tabacum HOM05D000805 ORTHO05D000624 2.4e-06 57.0 73 49.3
Peaxi162Scf00304g00108 Petunia axillaris HOM05D000805 ORTHO05D000624 2.4e-06 57.0 92 41.3
PGSC0003DMG400024152 Solanum tuberosum HOM05D000805 ORTHO05D000624 2.4e-06 57.0 68 47.1
Actinidia13613 Actinidia chinensis HOM05D000805 ORTHO05D000624 3.2e-06 56.6 78 43.6
Actinidia31666 Actinidia chinensis HOM05D000124 ORTHO05D000056 3.2e-06 56.6 68 45.6
CsaV3_5G004910 Cucumis sativus L. HOM05D000805 ORTHO05D000624 3.2e-06 56.6 73 42.5
Lsat_1_v5_gn_2_127000 Lactuca sativa HOM05D000805 ORTHO05D000624 3.2e-06 56.6 73 45.2
TPR.G13404 Trifolium pratense HOM05D000805 ORTHO05D000624 3.2e-06 56.6 73 47.9
Aa31LG3G18860 Aethionema arabicum HOM05D007846 ORTHO05D000624 4.1e-06 56.2 69 44.9
Aa31LG5G9790 Aethionema arabicum HOM05D000805 ORTHO05D000624 4.1e-06 56.2 101 37.6
AT5G07560 Arabidopsis thaliana HOM05D007846 ORTHO05D012592 4.1e-06 56.2 79 41.8
CARHR205580 Cardamine hirsuta HOM05D007846 ORTHO05D012592 4.1e-06 56.2 73 45.2
Dinv16870 Davidia involucrata HOM05D000124 ORTHO05D000056 4.1e-06 56.2 73 46.6
MBI04_g33724_MAGBIO Magnolia biondii HOM05D000805 ORTHO05D000624 4.1e-06 56.2 68 47.1
MBI04_g41759_MAGBIO Magnolia biondii HOM05D000805 ORTHO05D000624 4.1e-06 56.2 68 47.1
Cc02_g04750 Coffea canephora HOM05D000805 ORTHO05D000624 5.4e-06 55.8 78 44.9
Solyc06g060840.1 Solanum lycopersicum HOM05D000805 ORTHO05D000624 5.4e-06 55.8 68 47.1
Sopen06g020990 Solanum pennellii HOM05D000805 ORTHO05D000624 5.4e-06 55.8 68 47.1
PGSC0003DMG400021587 Solanum tuberosum HOM05D000805 ORTHO05D000624 5.4e-06 55.8 78 44.9
AT2G25890 Arabidopsis thaliana HOM05D000805 ORTHO05D000624 7.1e-06 55.5 98 37.8
AT5G07571 Arabidopsis thaliana HOM05D000805 ORTHO05D012592 7.1e-06 55.5 78 43.6
Migut.F00529 Erythranthe guttata HOM05D000805 ORTHO05D000624 7.1e-06 55.5 78 44.9
Oeu021666.1 Olea europaea HOM05D000805 ORTHO05D000624 7.1e-06 55.5 78 39.7
QL09p027843 Quercus lobata HOM05D000805 ORTHO05D000624 7.1e-06 55.5 82 41.5
Solyc06g034040.1 Solanum lycopersicum HOM05D000805 ORTHO05D000624 7.1e-06 55.5 78 43.6
AT5G07600 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 9.2e-06 55.1 66 50.0
CSS0030466 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 9.2e-06 55.1 102 36.3
CAN.G62.16 Capsicum annuum HOM05D000805 ORTHO05D000624 9.2e-06 55.1 101 40.6
CDE04G1920 Ceratophyllum demersum HOM05D000805 ORTHO05D000624 9.2e-06 55.1 84 41.7
HanXRQChr14g0460941 Helianthus annuus HOM05D000805 ORTHO05D000624 9.2e-06 55.1 73 43.8
Hma1.2p1_1305F.1_g274580 Hydrangea macrophylla HOM05D000805 ORTHO05D000624 9.2e-06 55.1 73 46.6
Lj8C47T8 Lonicera japonica HOM05D000805 ORTHO05D000624 9.2e-06 55.1 81 38.3
Sopen06g010720 Solanum pennellii HOM05D000805 ORTHO05D000624 9.2e-06 55.1 73 45.2


User provided reference genes

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