Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p45180 Brassica napus HOM05D010116 ORTHO05D012794 6.1e-128 461.1 276 100.0
BcaC06g33240 Brassica carinata HOM05D010116 ORTHO05D012794 1.2e-126 456.8 276 93.8
BolC7t45041H Brassica oleracea HOM05D010116 ORTHO05D012794 1.2e-126 456.8 276 93.8
BraA03t13834Z Brassica rapa HOM05D010116 ORTHO05D012794 1.7e-117 426.4 276 94.6
A03p47070 Brassica napus HOM05D010116 ORTHO05D012794 2.2e-109 399.4 276 89.9
BcaC06g33152 Brassica carinata HOM05D010116 ORTHO05D012794 7.5e-102 374.4 275 83.6
Sp2g24670 Schrenkiella parvula HOM05D010116 ORTHO05D012794 5.1e-74 282.0 295 65.1
Thhalv10005323m.g Eutrema salsugineum HOM05D010116 ORTHO05D012794 3.3e-65 252.7 258 59.3
BolC2t12210H Brassica oleracea HOM05D010116 ORTHO05D012794 5.5e-60 235.3 234 56.8
BcaB07g29827 Brassica carinata HOM05D010116 ORTHO05D012794 1.1e-57 227.6 261 57.1
BcaC03g18087 Brassica carinata HOM05D010116 ORTHO05D012794 2.6e-54 216.5 220 56.4
A02p41620 Brassica napus HOM05D010116 ORTHO05D012794 1.3e-53 214.2 234 55.6
BraA02t09104Z Brassica rapa HOM05D010116 ORTHO05D012794 3.0e-50 203.0 234 52.1
C02p61560 Brassica napus HOM05D010116 ORTHO05D012794 6.7e-50 201.8 234 51.7
AL8G38160 Arabidopsis lyrata HOM05D010116 ORTHO05D012794 6.9e-47 191.8 271 51.7
BcaC06g33241 Brassica carinata HOM05D010116 ORTHO05D012794 2.3e-42 176.8 250 46.0
AT5G61470 Arabidopsis thaliana HOM05D010116 ORTHO05D012794 1.7e-40 170.6 302 50.0
Carub.0008s2216 Capsella rubella HOM05D010116 ORTHO05D012794 1.0e-37 161.4 288 46.2
CARHR275240 Cardamine hirsuta HOM05D010116 ORTHO05D012794 3.3e-33 146.4 248 39.5
BcaC03g18086 Brassica carinata HOM05D010116 ORTHO05D012794 3.0e-26 123.2 123 60.2
Gohir.D07G046050 Gossypium hirsutum HOM05D010116 ORTHO05D001708 1.2e-11 74.7 232 27.6
Gorai.001G049200 Gossypium raimondii HOM05D010116 ORTHO05D001708 1.2e-11 74.7 232 27.6
Gohir.A07G041933 Gossypium hirsutum HOM05D010116 ORTHO05D001708 6.8e-10 68.9 232 26.7
AT3G60580 Arabidopsis thaliana HOM05D001867 ORTHO05D001708 8.8e-10 68.6 259 25.5
Manes.06G133500 Manihot esculenta HOM05D001867 ORTHO05D001708 3.4e-09 66.6 269 20.8
AL5G42890 Arabidopsis lyrata HOM05D001867 ORTHO05D001708 5.7e-09 65.9 270 24.4
PGR042G0355 Punica granatum HOM05D001867 ORTHO05D001708 7.5e-09 65.5 247 25.5
Thecc.03G153500 Theobroma cacao HOM05D001867 ORTHO05D001708 1.3e-08 64.7 249 27.3
HPP92_007425 Vanilla planifolia HOM05D001867 ORTHO05D001708 1.7e-08 64.3 253 27.7
QL09p005291 Quercus lobata HOM05D001867 ORTHO05D001708 2.2e-08 63.9 241 29.9
CiPaw.03G020600 Carya illinoinensis HOM05D001867 ORTHO05D001708 2.8e-08 63.5 258 24.8
BcaC08g45077 Brassica carinata HOM05D001867 ORTHO05D001708 3.7e-08 63.2 246 26.8
Ciclev10007101m.g Citrus clementina HOM05D001867 ORTHO05D001708 3.7e-08 63.2 232 28.9
COL.COLO4_14101 Corchorus olitorius HOM05D001867 ORTHO05D001708 3.7e-08 63.2 247 27.9
Aa31LG1G11350 Aethionema arabicum HOM05D001867 ORTHO05D001708 4.8e-08 62.8 246 25.6
A09p52800 Brassica napus HOM05D001867 ORTHO05D001708 4.8e-08 62.8 237 25.7
Dinv21642 Davidia involucrata HOM05D001867 ORTHO05D001708 6.3e-08 62.4 242 29.3
Hma1.2p1_0316F.1_g123130 Hydrangea macrophylla HOM05D001867 ORTHO05D001708 6.3e-08 62.4 244 26.6
Eucgr.K00165 Eucalyptus grandis HOM05D001867 ORTHO05D001708 8.3e-08 62.0 236 22.5
Thhalv10009894m.g Eutrema salsugineum HOM05D001867 ORTHO05D001708 8.3e-08 62.0 227 28.2
Lj7P537T47 Lonicera japonica HOM05D001867 ORTHO05D001708 1.4e-07 61.2 237 26.2
BcaC07g40579 Brassica carinata HOM05D001867 ORTHO05D001708 1.8e-07 60.8 229 26.6
C06p26860 Brassica napus HOM05D001867 ORTHO05D001708 1.8e-07 60.8 246 26.4
BolC6t37860H Brassica oleracea HOM05D001867 ORTHO05D001708 1.8e-07 60.8 246 26.4
BraA09t40712Z Brassica rapa HOM05D001867 ORTHO05D001708 1.8e-07 60.8 237 25.7
DCAR_015875 Daucus carota HOM05D001867 ORTHO05D001708 1.8e-07 60.8 252 30.2
MD07G1252200 Malus domestica HOM05D001867 ORTHO05D001708 1.8e-07 60.8 243 28.0
AT1G02030 Arabidopsis thaliana HOM05D001867 ORTHO05D001708 2.4e-07 60.5 236 27.1
CARHR170970 Cardamine hirsuta HOM05D001867 ORTHO05D001708 3.1e-07 60.1 259 25.5
Duzib068G0792 Durio zibethinus HOM05D001867 ORTHO05D001708 4.1e-07 59.7 237 24.1
Eucgr.A02901 Eucalyptus grandis HOM05D001867 ORTHO05D001708 4.1e-07 59.7 238 27.3
CSS0027051 Camellia sinensis var. sinensis HOM05D001867 ORTHO05D001708 5.4e-07 59.3 237 27.0
C08p35530 Brassica napus HOM05D001867 ORTHO05D001708 7.0e-07 58.9 232 23.7
TAR629G0567 Trochodendron aralioides HOM05D001867 ORTHO05D001708 7.0e-07 58.9 262 25.2
Manes.14G036900 Manihot esculenta HOM05D001867 ORTHO05D001708 9.1e-07 58.5 264 23.9
CiPaw.04G013500 Carya illinoinensis HOM05D001867 ORTHO05D001708 1.6e-06 57.8 262 24.4
Sabra01G0096900 Salix brachista HOM05D001867 ORTHO05D001708 1.6e-06 57.8 280 25.0
Solyc01g090840.3 Solanum lycopersicum HOM05D001867 ORTHO05D001708 1.6e-06 57.8 243 23.9
CARHR000340 Cardamine hirsuta HOM05D001867 ORTHO05D001708 2.0e-06 57.4 232 26.7
Sabra14G0046200 Salix brachista HOM05D000174 ORTHO05D001526 2.0e-06 57.4 245 27.3
Nitab4.5_0000618g0040 Nicotiana tabacum HOM05D001867 ORTHO05D001708 2.7e-06 57.0 246 24.4
Prupe.2G275700 Prunus persica HOM05D001867 ORTHO05D001708 3.5e-06 56.6 239 27.2
BcaB02g07404 Brassica carinata HOM05D001867 ORTHO05D001708 4.5e-06 56.2 227 24.7
A07p25170 Brassica napus HOM05D001867 ORTHO05D001708 4.5e-06 56.2 228 28.1
BraA07t30159Z Brassica rapa HOM05D001867 ORTHO05D001708 4.5e-06 56.2 228 28.1
Carub.0005s2730 Capsella rubella HOM05D001867 ORTHO05D001708 5.9e-06 55.8 260 29.6
MD01G1182000 Malus domestica HOM05D001867 ORTHO05D001708 7.7e-06 55.5 244 22.5


User provided reference genes

Program Settings