Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p44940 Brassica napus HOM05D009040 ORTHO05D002235 6.8e-241 837.0 456 100.0
BolC7t45017H Brassica oleracea HOM05D009040 ORTHO05D002235 1.6e-237 825.9 456 98.7
A03p46890 Brassica napus HOM05D009040 ORTHO05D002235 1.1e-209 733.4 458 89.5
BraA03t13809Z Brassica rapa HOM05D009040 ORTHO05D002235 1.1e-206 723.4 458 89.1
BcaC06g33223 Brassica carinata HOM05D009040 ORTHO05D002235 4.6e-205 718.0 515 80.4
BcaC06g33168 Brassica carinata HOM05D009040 ORTHO05D002235 4.5e-128 462.2 482 66.8
AT5G61260 Arabidopsis thaliana HOM05D009040 ORTHO05D002235 9.5e-110 401.4 517 58.4
AL8G37920 Arabidopsis lyrata HOM05D009040 ORTHO05D002235 7.0e-105 385.2 514 57.2
Thhalv10005353m.g Eutrema salsugineum HOM05D009040 ORTHO05D002235 6.0e-104 382.1 505 56.0
Sp2g24490 Schrenkiella parvula HOM05D009040 ORTHO05D002235 1.1e-100 371.3 515 55.5
CARHR275010 Cardamine hirsuta HOM05D009040 ORTHO05D002235 1.7e-87 327.4 488 51.0
A02p41540 Brassica napus HOM05D009040 ORTHO05D002235 2.4e-84 317.0 433 55.2
BolC2t12199H Brassica oleracea HOM05D009040 ORTHO05D002235 2.1e-80 303.9 445 53.7
Carub.0008s2194 Capsella rubella HOM05D009040 ORTHO05D002235 3.5e-80 303.1 515 49.1
C02p61480 Brassica napus HOM05D009040 ORTHO05D002235 6.0e-80 302.4 445 53.5
BraA02t09095Z Brassica rapa HOM05D009040 ORTHO05D002235 7.8e-80 302.0 440 53.2
Aa31LG3G18640 Aethionema arabicum HOM05D009040 ORTHO05D002235 3.0e-47 193.7 516 36.8
THA.LOC104801387 Tarenaya hassleriana HOM05D009040 ORTHO05D002235 8.2e-45 185.7 496 36.7
Thhalv10013233m.g Eutrema salsugineum HOM05D009040 ORTHO05D002235 2.3e-31 141.0 552 31.3
C09p69010 Brassica napus HOM05D009040 ORTHO05D002235 3.9e-31 140.2 514 30.9
BolC9t59646H Brassica oleracea HOM05D009040 ORTHO05D002235 2.6e-30 137.5 515 31.1
A10p28700 Brassica napus HOM05D009040 ORTHO05D002235 3.3e-30 137.1 520 32.3
BraA10t44917Z Brassica rapa HOM05D009040 ORTHO05D002235 3.3e-30 137.1 520 32.3
BcaC06g32509 Brassica carinata HOM05D009040 ORTHO05D002235 1.7e-29 134.8 477 32.3
A03p03480 Brassica napus HOM05D009040 ORTHO05D002235 3.1e-28 130.6 440 35.2
BraA03t09698Z Brassica rapa HOM05D009040 ORTHO05D002235 9.1e-28 129.0 441 34.5
THA.LOC104819408 Tarenaya hassleriana HOM05D009040 ORTHO05D002235 5.0e-26 123.2 474 32.9
CARHR205360 Cardamine hirsuta HOM05D009040 ORTHO05D002235 3.2e-25 120.6 501 31.3
BolC3t12928H Brassica oleracea HOM05D009040 ORTHO05D002235 8.0e-24 115.9 431 33.6
Sp6g35110 Schrenkiella parvula HOM05D009040 ORTHO05D002235 1.0e-23 115.5 282 40.8
C03p03900 Brassica napus HOM05D009040 ORTHO05D002235 4.0e-23 113.6 433 33.9
BcaB01g05649 Brassica carinata HOM05D009040 ORTHO05D002235 4.4e-22 110.2 451 32.6
AL6G18160 Arabidopsis lyrata HOM05D009040 ORTHO05D002235 4.1e-20 103.6 257 40.9
AT5G07820 Arabidopsis thaliana HOM05D009040 ORTHO05D002235 7.0e-20 102.8 234 40.6
BcaC06g32508 Brassica carinata HOM05D009040 ORTHO05D002235 7.7e-19 99.4 119 55.5
Carub.0006s0674 Capsella rubella HOM05D009040 ORTHO05D002235 1.0e-18 99.0 249 40.6
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 1.0e-10 72.4 83 54.2
CsaV3_1G005770 Cucumis sativus L. HOM05D003021 ORTHO05D002235 1.3e-10 72.0 144 39.6
Atru.chr8.382 Acer truncatum HOM05D003021 ORTHO05D002235 2.3e-10 71.2 108 43.5
COL.COLO4_21376 Corchorus olitorius HOM05D003021 ORTHO05D002235 5.0e-10 70.1 64 60.9
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 5.0e-10 70.1 65 61.5
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 8.6e-10 69.3 54 68.5
Cc07_g03910 Coffea canephora HOM05D003021 ORTHO05D002235 1.1e-09 68.9 63 57.1
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 1.1e-09 68.9 60 61.7
FAN13G0757 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.1e-09 68.9 58 65.5
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 1.5e-09 68.6 66 60.6
Gohir.A05G370400 Gossypium hirsutum HOM05D003021 ORTHO05D002235 1.5e-09 68.6 65 61.5
TAR622G0013 Trochodendron aralioides HOM05D003021 ORTHO05D002235 1.5e-09 68.6 102 44.1
FAN08G3689 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.9e-09 68.2 58 65.5
MELO3C002008.2 Cucumis melo HOM05D003021 ORTHO05D002235 2.5e-09 67.8 150 37.3
Medtr6g013485 Medicago truncatula HOM05D003021 ORTHO05D002235 2.5e-09 67.8 199 33.7
SGA_v2.0_scaffold121G33085 Striga asiatica HOM05D003021 ORTHO05D002235 2.5e-09 67.8 342 26.6
arahy.Tifrunner.gnm1.ann1.JN5ZJX Arachis hypogaea HOM05D003021 ORTHO05D002235 3.3e-09 67.4 148 40.5
Ca_21794_v3 Cicer arietinum L. HOM05D014856 ORTHO05D002235 3.3e-09 67.4 90 52.2
RcHm_v2.0_Chr2g0166531 Rosa chinensis HOM05D003021 ORTHO05D002235 3.3e-09 67.4 125 37.6
FAN14G5480 Fragaria x ananassa HOM05D003021 ORTHO05D002235 4.2e-09 67.0 122 37.7
MD09G1061400 Malus domestica HOM05D003021 ORTHO05D002235 4.2e-09 67.0 118 42.4
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 5.5e-09 66.6 55 65.5
Dinv10680 Davidia involucrata HOM05D003021 ORTHO05D002235 5.5e-09 66.6 269 31.2
FvH4_5g14370 Fragaria vesca HOM05D003021 ORTHO05D002235 5.5e-09 66.6 58 65.5
TPR.G26183 Trifolium pratense HOM05D003021 ORTHO05D002235 5.5e-09 66.6 193 35.8
CSS0009655 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 7.2e-09 66.2 91 47.3
CANSAT64G0795 Cannabis sativa HOM05D003021 ORTHO05D002235 7.2e-09 66.2 54 66.7
Ca_04869_v3 Cicer arietinum L. HOM05D003021 ORTHO05D002235 7.2e-09 66.2 134 37.3
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 7.2e-09 66.2 66 60.6
DCAR_011056 Daucus carota HOM05D003021 ORTHO05D002235 7.2e-09 66.2 130 38.5
Prupe.5G200000 Prunus persica HOM05D003021 ORTHO05D002235 7.2e-09 66.2 91 46.2
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 9.5e-09 65.9 94 48.9
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 9.5e-09 65.9 94 48.9
Sed0023229 Sechium edule HOM05D003021 ORTHO05D002235 9.5e-09 65.9 127 41.7
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 1.2e-08 65.5 65 55.4
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 1.6e-08 65.1 61 57.4
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 1.6e-08 65.1 171 35.7
FvH4_6g47500 Fragaria vesca HOM05D003021 ORTHO05D002235 2.8e-08 64.3 122 36.9
FAN09G3860 Fragaria x ananassa HOM05D003021 ORTHO05D002235 2.8e-08 64.3 122 37.7
Potri.017G090200 Populus trichocarpa HOM05D003021 ORTHO05D002235 2.8e-08 64.3 53 66.0
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 2.8e-08 64.3 62 59.7
CiPaw.03G091400 Carya illinoinensis HOM05D003021 ORTHO05D002235 3.6e-08 63.9 118 40.7
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 3.6e-08 63.9 157 36.3
Psat6g146680 Pisum sativum HOM05D003021 ORTHO05D002235 3.6e-08 63.9 183 33.9
Prupe.3G258800 Prunus persica HOM05D003021 ORTHO05D002235 3.6e-08 63.9 154 34.4
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 3.6e-08 63.9 53 64.2
Cpa.g.sc1213.2 Carica papaya HOM05D003021 ORTHO05D002235 6.1e-08 63.2 248 33.5
CiPaw.04G058300 Carya illinoinensis HOM05D003021 ORTHO05D002235 6.1e-08 63.2 129 37.2
Lsat_1_v5_gn_4_170321 Lactuca sativa HOM05D003021 ORTHO05D002235 6.1e-08 63.2 66 54.5
PGR083G2506 Punica granatum HOM05D003021 ORTHO05D002235 6.1e-08 63.2 94 46.8
Actinidia09241 Actinidia chinensis HOM05D003021 ORTHO05D002235 8.0e-08 62.8 173 35.3
Lj1g0014126 Lotus japonicus HOM05D003021 ORTHO05D002235 8.0e-08 62.8 64 54.7
THA.LOC104823896 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 8.0e-08 62.8 63 57.1
Actinidia01976 Actinidia chinensis HOM05D003021 ORTHO05D002235 1.0e-07 62.4 160 33.8
Ah.10g031940 Amaranthus hybridus HOM05D003021 ORTHO05D002235 1.0e-07 62.4 118 41.5
AL6G26280 Arabidopsis lyrata HOM05D009950 ORTHO05D002235 1.0e-07 62.4 109 40.4
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 1.0e-07 62.4 55 60.0
Rhsim12G0153000 Rhododendron simsii HOM05D003021 ORTHO05D002235 1.0e-07 62.4 181 36.5
FAN05G2768 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.4e-07 62.0 122 36.9
Hma1.2p1_1813F.1_g303770 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 1.4e-07 62.0 55 65.5
Hma1.2p1_3044F.1_g332070 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 1.4e-07 62.0 55 65.5
Manes.06G088100 Manihot esculenta HOM05D003021 ORTHO05D002235 1.4e-07 62.0 120 40.8
Sed0005734 Sechium edule HOM05D003021 ORTHO05D002235 1.4e-07 62.0 146 35.6
THA.LOC104805496 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 1.4e-07 62.0 110 39.1
A03p07130 Brassica napus HOM05D009950 ORTHO05D002235 1.8e-07 61.6 60 58.3
BraA03t10035Z Brassica rapa HOM05D009950 ORTHO05D002235 1.8e-07 61.6 60 58.3
Aqoxy3G03562 Aquilegia oxysepala HOM05D003021 ORTHO05D002235 2.3e-07 61.2 122 37.7
Lj9P468T32 Lonicera japonica HOM05D003021 ORTHO05D002235 2.3e-07 61.2 127 35.4
Medtr4g109220 Medicago truncatula HOM05D014856 ORTHO05D002235 2.3e-07 61.2 129 38.8
PSO013G0053 Papaver somniferum HOM05D003021 ORTHO05D002235 2.3e-07 61.2 142 35.2
CANSAT80G0381 Cannabis sativa HOM05D003021 ORTHO05D002235 3.0e-07 60.8 45 71.1
Oeu000639.1 Olea europaea HOM05D003021 ORTHO05D002235 3.0e-07 60.8 147 38.1
RcHm_v2.0_Chr7g0182331 Rosa chinensis HOM05D003021 ORTHO05D002235 3.0e-07 60.8 46 69.6
EL10Ac2g03069 Beta vulgaris HOM05D003021 ORTHO05D002235 4.0e-07 60.5 117 38.5
Solyc06g069620.1 Solanum lycopersicum HOM05D003021 ORTHO05D002235 4.0e-07 60.5 121 38.8
Carub.0006s1359 Capsella rubella HOM05D009950 ORTHO05D002235 5.2e-07 60.1 102 44.1
Cpa.g.sc14.145 Carica papaya HOM05D003021 ORTHO05D002235 5.2e-07 60.1 53 66.0
ECA232G0555 Erigeron canadensis HOM05D003021 ORTHO05D002235 5.2e-07 60.1 54 61.1
HanXRQChr15g0488721 Helianthus annuus HOM05D003021 ORTHO05D002235 5.2e-07 60.1 54 61.1
PGR083G1105 Punica granatum HOM05D003021 ORTHO05D002235 5.2e-07 60.1 165 32.7
Glyma.13G058900 Glycine max HOM05D003021 ORTHO05D002235 6.8e-07 59.7 80 47.5
MD06G1199300 Malus domestica HOM05D003021 ORTHO05D002235 6.8e-07 59.7 93 39.8
PGSC0003DMG400001352 Solanum tuberosum HOM05D003021 ORTHO05D002235 6.8e-07 59.7 198 32.8
Lj2g0010760 Lotus japonicus HOM05D003021 ORTHO05D002235 8.9e-07 59.3 85 44.7
Lalb_Chr06g0175101 Lupinus albus HOM05D003021 ORTHO05D002235 8.9e-07 59.3 54 63.0
Carub.0007s3655 Capsella rubella HOM05D003021 ORTHO05D002235 1.2e-06 58.9 55 61.8
AUR62018150 Chenopodium quinoa HOM05D003021 ORTHO05D002235 1.2e-06 58.9 53 58.5
MD14G1207900 Malus domestica HOM05D003021 ORTHO05D002235 1.2e-06 58.9 130 39.2
Medtr7g012290 Medicago truncatula HOM05D003021 ORTHO05D002235 1.2e-06 58.9 54 57.4
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 1.2e-06 58.9 149 34.9
AT5G15430 Arabidopsis thaliana HOM05D009950 ORTHO05D002235 1.5e-06 58.5 150 37.3
ECA238G3698 Erigeron canadensis HOM05D003021 ORTHO05D002235 1.5e-06 58.5 104 43.3
Thhalv10013405m.g Eutrema salsugineum HOM05D009950 ORTHO05D002235 1.5e-06 58.5 152 37.5
Sp6g28670 Schrenkiella parvula HOM05D009950 ORTHO05D002235 1.5e-06 58.5 163 35.0
MSTRG.15459 Avicennia marina HOM05D003021 ORTHO05D002235 2.0e-06 58.2 101 41.6
PSO063G0327 Papaver somniferum HOM05D003021 ORTHO05D002235 2.0e-06 58.2 142 34.5
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 2.0e-06 58.2 328 28.4
Sopen06g026920 Solanum pennellii HOM05D003021 ORTHO05D002235 2.0e-06 58.2 122 37.7
Zm00001eb400410 Zea mays HOM05D003021 ORTHO05D002235 2.0e-06 58.2 70 48.6
Ah.02g113870 Amaranthus hybridus HOM05D003021 ORTHO05D002235 2.6e-06 57.8 104 43.3
ATR0564G160 Amborella trichopoda HOM05D003021 ORTHO05D002235 2.6e-06 57.8 116 38.8
THA.LOC104822343 Tarenaya hassleriana HOM05D009950 ORTHO05D002235 2.6e-06 57.8 56 60.7
Glyma.18G264100 Glycine max HOM05D003021 ORTHO05D002235 3.4e-06 57.4 54 59.3
Nitab4.5_0001211g0040 Nicotiana tabacum HOM05D003021 ORTHO05D022173 3.4e-06 57.4 58 53.4
Os03g0211400 Oryza sativa ssp. japonica HOM05D003021 ORTHO05D002235 3.4e-06 57.4 61 55.7
HanXRQChr09g0264151 Helianthus annuus HOM05D003021 ORTHO05D002235 4.4e-06 57.0 54 59.3
Solyc02g088580.1 Solanum lycopersicum HOM05D003021 ORTHO05D002235 4.4e-06 57.0 201 32.8
Sed0010326 Sechium edule HOM05D003021 ORTHO05D002235 5.7e-06 56.6 185 33.0
Sopen02g033310 Solanum pennellii HOM05D003021 ORTHO05D002235 5.7e-06 56.6 202 33.2
Eucgr.B00563 Eucalyptus grandis HOM05D003021 ORTHO05D002235 7.5e-06 56.2 431 26.5
Sed0026957 Sechium edule HOM05D003021 ORTHO05D002235 7.5e-06 56.2 255 32.5
PGSC0003DMG400024656 Solanum tuberosum HOM05D003021 ORTHO05D022173 7.5e-06 56.2 58 55.2
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 7.5e-06 56.2 231 30.3
HPP92_010149 Vanilla planifolia HOM05D040231 ORTHO05D002235 7.5e-06 56.2 85 44.7
CAN.G606.81 Capsicum annuum HOM05D003021 ORTHO05D002235 9.8e-06 55.8 76 47.4
CARHR263020 Cardamine hirsuta HOM05D003021 ORTHO05D002235 9.8e-06 55.8 55 61.8
Glyma.19G027500 Glycine max HOM05D003021 ORTHO05D002235 9.8e-06 55.8 262 31.7


User provided reference genes

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