Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 1.4e-291 1005.7 563 100.0
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 8.5e-286 986.5 563 94.0
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 4.4e-266 921.0 578 88.4
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 6.4e-257 890.6 583 86.4
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 8.9e-243 843.6 578 83.6
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.7e-209 733.0 610 71.5
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 1.7e-201 706.4 607 69.4
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 1.4e-198 696.8 608 69.6
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 1.8e-195 686.4 610 68.2
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 1.0e-193 680.6 612 67.5
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 2.4e-163 579.7 607 61.0
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 5.4e-131 472.2 658 48.9
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 2.1e-114 417.2 610 48.4
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 7.8e-114 415.2 609 50.1
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.3e-108 397.9 605 47.8
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 2.9e-108 396.7 627 48.0
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 3.8e-108 396.4 603 48.6
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 4.9e-108 396.0 602 47.8
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 1.4e-107 394.4 580 50.9
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.1e-102 378.3 611 48.0
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 4.5e-101 372.9 592 47.0
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 5.5e-99 365.9 602 48.3
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 1.3e-97 361.3 602 48.2
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 5.1e-97 359.4 595 46.2
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 5.9e-77 292.7 689 36.4
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 2.1e-74 284.3 718 35.5
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 1.1e-72 278.5 728 34.8
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 5.7e-72 276.2 368 54.9
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 1.2e-69 268.5 694 34.3
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 3.8e-68 263.5 704 34.2
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 3.8e-68 263.5 717 35.0
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 9.4e-67 258.8 705 35.3
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 1.4e-65 255.0 717 33.3
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 1.8e-65 254.6 713 33.0
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 2.0e-64 251.1 695 33.5
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 1.1e-62 245.4 694 33.3
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 1.6e-61 241.5 720 33.1
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 7.7e-61 239.2 715 32.9
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 1.0e-60 238.8 720 33.9
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 2.2e-60 237.7 707 33.7
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 2.9e-60 237.3 666 34.1
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 3.8e-60 236.9 675 34.2
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 5.0e-60 236.5 715 32.7
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 1.5e-59 235.0 729 31.7
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 3.2e-59 233.8 674 32.0
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 5.5e-59 233.0 729 32.1
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 9.4e-59 232.3 691 32.1
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 2.1e-58 231.1 669 33.6
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.7e-58 230.7 676 31.5
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 3.6e-58 230.3 682 32.6
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 3.6e-58 230.3 709 31.3
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.6e-58 230.3 665 32.2
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 4.7e-58 229.9 682 32.7
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.8e-57 228.0 668 32.6
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 2.3e-57 227.6 714 32.9
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 8.8e-57 225.7 697 32.9
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.3e-55 221.9 748 31.0
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.3e-55 221.9 694 31.3
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 1.7e-55 221.5 707 30.1
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 2.8e-55 220.7 596 35.1
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 3.7e-55 220.3 685 31.5
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 6.3e-55 219.5 678 32.2
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 1.1e-54 218.8 732 32.0
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 5.4e-54 216.5 260 56.9
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 1.6e-53 214.9 637 32.8
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 3.5e-53 213.8 732 32.2
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 4.5e-53 213.4 694 30.5
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 5.9e-53 213.0 539 35.1
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.0e-52 212.2 670 30.6
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 1.0e-52 212.2 685 32.6
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 1.0e-52 212.2 684 31.1
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 2.2e-52 211.1 714 32.2
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 3.8e-52 210.3 622 33.1
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 3.8e-52 210.3 662 30.4
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 3.8e-52 210.3 682 31.4
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 8.5e-52 209.1 701 31.5
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 4.2e-51 206.8 671 31.3
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 7.2e-51 206.1 695 30.5
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 1.6e-50 204.9 668 31.3
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 3.6e-50 203.8 683 30.7
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 6.1e-50 203.0 694 31.8
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 4.0e-49 200.3 612 33.0
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 1.2e-48 198.7 694 30.1
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 1.5e-48 198.4 718 28.6
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 1.5e-48 198.4 536 33.4
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 2.6e-48 197.6 681 30.2
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 7.5e-48 196.1 756 28.7
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 7.5e-48 196.1 639 31.9
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 7.5e-48 196.1 702 28.5
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 1.3e-47 195.3 711 28.1
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 3.7e-47 193.7 710 29.4
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 4.9e-47 193.4 686 30.0
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 4.9e-47 193.4 827 27.9
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 3.1e-46 190.7 679 28.9
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 4.1e-46 190.3 685 29.9
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 5.4e-46 189.9 704 29.4
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 5.4e-46 189.9 692 29.0
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 3.5e-45 187.2 696 30.0
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 1.0e-44 185.7 690 30.4
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 1.3e-44 185.3 599 30.4
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 1.3e-44 185.3 536 31.7
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 2.3e-44 184.5 572 31.3
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 2.3e-44 184.5 541 31.4
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 3.8e-44 183.7 676 29.3
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 6.6e-44 183.0 551 29.9
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 3.3e-43 180.6 678 29.4
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 9.5e-43 179.1 622 31.4
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 3.6e-42 177.2 555 31.4
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 3.6e-42 177.2 555 31.2
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 3.6e-42 177.2 683 27.8
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 4.7e-42 176.8 673 29.0
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 4.7e-42 176.8 704 28.1
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 8.0e-42 176.0 645 29.8
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 2.3e-41 174.5 600 30.3
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 2.3e-41 174.5 690 26.8
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 5.2e-41 173.3 719 28.4
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 3.4e-40 170.6 544 31.4
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 7.5e-40 169.5 679 28.3
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.3e-39 168.7 532 31.8
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 1.7e-39 168.3 505 33.5
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 8.3e-39 166.0 564 30.9
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 8.3e-39 166.0 714 29.6
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 2.4e-38 164.5 551 29.9
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 3.2e-38 164.1 580 28.8
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 5.4e-38 163.3 550 29.8
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 5.0e-36 156.8 662 27.0
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 8.0e-34 149.4 564 28.9
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 3.1e-33 147.5 513 29.8
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 7.5e-32 142.9 512 28.5
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 7.5e-32 142.9 614 28.3
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 9.8e-32 142.5 550 30.2
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 6.4e-31 139.8 747 26.1
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 7.0e-30 136.3 691 25.8
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 7.0e-30 136.3 385 33.0
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 7.0e-30 136.3 379 33.5
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.2e-29 135.6 760 25.8
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.7e-28 131.7 413 30.8
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 2.3e-28 131.3 392 30.9
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 2.3e-28 131.3 504 29.0
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 8.6e-28 129.4 232 39.7
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 4.3e-27 127.1 521 27.6
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 5.6e-27 126.7 478 30.8
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 1.2e-26 125.6 490 30.0
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 1.6e-26 125.2 508 27.6
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 2.1e-26 124.8 365 32.6
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 2.1e-26 124.8 483 28.6
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 4.7e-26 123.6 471 28.2
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 8.1e-26 122.9 538 27.9
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 1.2e-24 119.0 528 27.3
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 2.2e-23 114.8 248 37.5
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 2.9e-23 114.4 438 29.9
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 4.9e-23 113.6 474 29.5
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 4.6e-21 107.1 496 27.4
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 4.6e-21 107.1 662 25.8
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 1.3e-20 105.5 599 27.4
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 8.6e-20 102.8 411 27.5
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 1.5e-19 102.1 227 39.2
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 1.9e-19 101.7 466 27.5
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 2.1e-18 98.2 253 36.0
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 8.1e-18 96.3 302 30.1
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 1.4e-17 95.5 372 29.3
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 3.1e-17 94.4 506 25.5
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 4.0e-17 94.0 254 34.6
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 3.4e-16 90.9 496 26.8
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 7.6e-16 89.7 282 32.3
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 2.2e-15 88.2 537 25.1
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 2.9e-15 87.8 232 36.2
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 3.7e-15 87.4 426 27.0
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 1.9e-14 85.1 308 30.5
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 9.2e-14 82.8 400 29.0
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 1.2e-13 82.4 493 27.8
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 4.6e-13 80.5 232 33.2
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.0e-12 79.3 190 38.9
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 1.7e-12 78.6 221 32.1
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 1.1e-11 75.9 472 25.2
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 1.1e-11 75.9 385 26.5
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 7.3e-11 73.2 336 26.8
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 9.6e-11 72.8 338 24.9
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 4.7e-10 70.5 396 25.8
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 1.4e-09 68.9 435 25.7
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 1.4e-09 68.9 363 25.3
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 3.1e-09 67.8 305 29.2
BcaB07g34223 Brassica carinata HOM05D003672 ORTHO05D004121 4.0e-09 67.4 65 63.1
C06p31970 Brassica napus HOM05D023672 ORTHO05D024296 4.2e-06 57.4 76 44.7
BolC6t38324H Brassica oleracea HOM05D023672 ORTHO05D024296 4.2e-06 57.4 76 44.7


User provided reference genes

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