Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 4.7e-252 874.0 432 100.0
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 1.7e-249 865.5 433 99.3
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 6.9e-227 790.4 427 92.0
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 2.9e-217 758.4 401 93.5
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.8e-214 749.2 400 91.2
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 2.6e-210 735.3 400 89.2
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 2.0e-205 719.2 400 86.8
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 8.2e-204 713.8 400 86.5
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 1.1e-203 713.4 401 86.0
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 9.1e-203 710.3 405 86.4
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 2.8e-180 635.6 403 75.2
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 2.6e-173 612.5 406 74.6
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.7e-156 556.6 407 67.3
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.7e-156 555.4 408 67.9
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 6.4e-156 554.7 403 67.7
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.9e-155 553.1 406 67.0
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 2.0e-154 549.7 409 67.0
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 7.8e-154 547.7 406 67.2
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 3.0e-153 545.8 403 66.5
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 6.6e-153 544.7 404 68.3
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 6.6e-153 544.7 403 66.5
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 1.9e-152 543.1 405 67.9
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.9e-152 543.1 407 65.4
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 4.3e-152 542.0 407 65.1
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 7.3e-152 541.2 393 67.7
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 1.2e-151 540.4 404 65.8
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 1.8e-150 536.6 407 67.1
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 4.0e-150 535.4 404 64.6
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 2.6e-149 532.7 381 69.0
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 2.9e-148 529.3 405 64.9
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 8.3e-148 527.7 406 63.8
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 1.1e-147 527.3 407 64.1
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.9e-147 526.6 397 66.2
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 3.2e-147 525.8 408 64.7
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 7.0e-147 524.6 407 62.4
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 1.2e-146 523.9 407 64.6
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.6e-146 523.5 408 65.7
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 2.7e-146 522.7 410 65.6
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 2.7e-146 522.7 409 64.1
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 2.7e-146 522.7 407 63.4
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 1.3e-145 520.4 410 64.1
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 1.3e-145 520.4 408 64.2
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 1.3e-145 520.4 408 63.5
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 1.7e-145 520.0 404 66.1
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 2.3e-145 519.6 408 62.7
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 2.3e-145 519.6 410 63.4
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 3.0e-145 519.2 405 64.2
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 6.6e-145 518.1 408 63.7
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 6.6e-145 518.1 402 63.9
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 8.6e-145 517.7 408 63.7
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 1.1e-144 517.3 397 63.7
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 1.5e-144 516.9 407 62.9
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 1.5e-144 516.9 406 64.8
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 1.5e-144 516.9 408 62.7
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.9e-144 516.5 402 64.2
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 9.5e-144 514.2 402 63.4
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 1.6e-143 513.5 408 61.5
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 1.6e-143 513.5 405 63.5
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 2.1e-143 513.1 416 60.3
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 1.8e-142 510.0 401 63.8
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 3.1e-142 509.2 405 63.5
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 8.9e-142 507.7 409 65.0
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 4.4e-141 505.4 410 62.2
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 5.8e-141 505.0 406 62.6
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.3e-140 503.8 397 63.7
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 1.3e-140 503.8 405 63.7
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 2.4e-139 499.6 411 62.0
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 4.1e-139 498.8 407 62.4
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 5.4e-139 498.4 405 61.2
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 9.2e-139 497.7 410 63.7
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 9.2e-139 497.7 410 61.5
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 2.1e-138 496.5 406 61.6
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 2.7e-138 496.1 410 61.2
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 2.7e-138 496.1 411 62.5
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 4.6e-138 495.4 412 61.2
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 6.0e-138 495.0 411 60.6
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 7.8e-138 494.6 407 61.7
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 5.1e-137 491.9 416 60.8
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 8.6e-137 491.1 452 58.0
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 5.6e-136 488.4 424 59.0
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 7.3e-136 488.0 407 61.7
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 1.1e-134 484.2 407 59.2
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 2.4e-134 483.0 407 61.4
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 1.2e-133 480.7 426 58.5
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 3.4e-133 479.2 424 59.4
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 3.4e-133 479.2 366 65.0
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.4e-131 473.8 451 56.5
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 1.2e-130 470.7 482 53.7
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 2.1e-130 469.9 406 59.4
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 1.0e-129 467.6 401 60.6
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 3.3e-128 462.6 356 62.9
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 7.3e-128 461.5 400 61.5
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 9.6e-128 461.1 403 60.5
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 1.4e-126 457.2 415 56.6
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 4.0e-126 455.7 399 59.6
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.6e-125 453.0 393 60.6
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 4.4e-125 452.2 365 62.2
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 5.8e-125 451.8 408 58.3
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 9.9e-125 451.1 399 58.6
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 4.9e-124 448.7 401 60.1
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 6.4e-124 448.4 436 54.8
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 6.4e-124 448.4 436 54.8
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 1.2e-122 444.1 408 58.6
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 3.5e-122 442.6 399 58.9
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 1.7e-121 440.3 352 64.5
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 3.0e-121 439.5 335 64.2
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 1.5e-120 437.2 385 57.1
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 2.5e-120 436.4 394 58.6
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 2.9e-116 422.9 401 54.6
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 5.4e-115 418.7 403 55.8
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 1.8e-113 413.7 401 54.4
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 3.0e-113 412.9 403 53.6
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 4.3e-112 409.1 399 54.1
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 7.4e-112 408.3 401 53.6
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 9.6e-112 407.9 366 56.6
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 4.0e-110 402.5 402 53.0
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 5.3e-110 402.1 400 52.2
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 6.9e-110 401.7 400 52.2
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 9.0e-110 401.4 382 53.4
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 9.0e-110 401.4 327 57.2
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 5.8e-109 398.7 391 55.5
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 2.2e-108 396.7 399 53.1
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.1e-107 394.4 319 60.2
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 1.9e-107 393.7 403 52.4
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 1.6e-106 390.6 320 59.7
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 1.9e-104 383.6 404 50.5
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 1.4e-102 377.5 252 70.6
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.3e-97 360.9 263 67.3
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 3.3e-96 356.3 392 50.0
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 3.3e-96 356.3 392 50.0
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 7.4e-96 355.1 392 49.7
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.1e-94 351.3 390 45.9
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 9.0e-94 348.2 423 49.4
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 2.7e-90 336.7 395 45.6
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 7.9e-90 335.1 359 50.1
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.8e-87 325.9 265 63.4
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 4.5e-85 319.3 336 49.7
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.2e-84 317.0 273 57.5
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.2e-83 312.8 276 59.1
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 5.5e-83 312.4 252 58.7
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.2e-82 311.2 342 49.7
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 6.1e-82 308.9 264 62.1
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 7.9e-82 308.5 229 67.2
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 3.0e-81 306.6 392 44.1
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 5.1e-81 305.8 396 42.4
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.1e-80 304.7 255 58.8
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 7.4e-80 302.0 402 42.0
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 4.7e-66 256.1 193 62.7
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 8.8e-65 251.9 304 47.0
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 9.1e-62 241.9 366 41.3
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.9e-59 234.2 157 69.4
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 1.8e-57 227.6 442 33.9
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 2.3e-52 210.7 300 46.7
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 3.8e-52 209.9 371 39.6
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 3.3e-51 206.8 299 45.5
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 5.0e-44 183.0 359 34.3
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 3.4e-40 170.2 450 31.1
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 4.0e-33 146.7 173 51.4
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.3e-31 141.7 131 58.0
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.7e-31 141.4 98 62.2
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 2.2e-31 141.0 127 60.6
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 3.7e-31 140.2 140 57.1
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 9.2e-30 135.6 326 29.4
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 6.6e-28 129.4 130 53.1
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 3.5e-21 107.1 67 77.6
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.0e-16 91.3 64 67.2
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 1.1e-14 85.5 55 78.2
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 5.4e-14 83.2 120 37.5
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.7e-13 80.9 125 39.2
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.6e-10 71.6 58 56.9
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 2.4e-09 67.8 132 35.6
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.5e-08 65.1 64 51.6
C02p60980 Brassica napus HOM05D003933 ORTHO05D004746 4.4e-08 63.5 52 69.2
Psat7g177720 Pisum sativum HOM05D003933 ORTHO05D004746 2.4e-06 57.8 44 65.9


User provided reference genes

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