Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1180.6 600 100.0
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 0.0e+00 1161.4 600 98.8
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1153.7 600 97.8
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 0.0e+00 1151.7 600 97.8
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 0.0e+00 1130.5 600 93.0
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 0.0e+00 1129.8 600 95.0
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 0.0e+00 1128.6 600 93.2
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1127.5 600 92.7
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 0.0e+00 1125.2 600 95.2
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 0.0e+00 1122.5 601 94.8
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1120.1 600 94.3
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 0.0e+00 1116.3 600 92.5
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 0.0e+00 1104.7 600 91.2
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 0.0e+00 1099.3 600 91.0
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 0.0e+00 1088.9 600 92.0
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 0.0e+00 1082.0 601 91.0
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 2.6e-301 1038.1 601 87.7
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.2e-293 1012.7 600 83.0
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 4.5e-293 1010.7 603 83.3
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 3.8e-292 1007.7 600 82.5
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 9.4e-291 1003.0 603 82.4
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 4.4e-288 994.2 606 82.3
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 2.4e-286 988.4 605 81.3
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 7.0e-286 986.9 605 81.8
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 2.6e-285 984.9 595 82.5
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 2.6e-285 984.9 606 81.2
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 6.5e-284 980.3 574 83.6
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 4.2e-275 951.0 602 81.4
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 2.1e-274 948.7 603 80.6
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 8.6e-268 926.8 520 87.5
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 3.4e-264 914.8 606 76.6
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 5.4e-262 907.5 570 76.8
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 5.9e-261 904.0 572 76.2
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 7.8e-261 903.7 571 76.5
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 7.8e-261 903.7 571 76.5
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.3e-260 902.9 570 76.7
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 3.8e-260 901.4 570 76.5
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.1e-259 899.8 570 76.3
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 1.9e-259 899.0 571 75.3
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 2.5e-259 898.7 600 72.3
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 2.1e-258 895.6 570 75.4
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 4.7e-258 894.4 600 74.0
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 6.1e-258 894.0 553 77.4
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 8.0e-258 893.6 602 74.4
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.0e-257 893.3 570 75.3
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 1.8e-257 892.5 567 76.2
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.8e-257 892.5 570 75.8
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 2.3e-257 892.1 571 74.6
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 3.0e-257 891.7 570 76.3
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 3.0e-257 891.7 571 74.6
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.2e-257 891.0 894 55.5
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 5.2e-257 891.0 570 76.0
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 5.2e-257 891.0 569 76.3
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.5e-256 889.4 576 74.5
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 2.0e-256 889.0 570 75.1
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 2.0e-256 889.0 570 76.0
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 4.4e-256 887.9 572 74.5
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 9.8e-256 886.7 577 74.4
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 1.7e-255 885.9 576 75.2
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 2.9e-255 885.2 570 75.6
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 2.9e-255 885.2 586 72.7
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 3.7e-255 884.8 570 75.4
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 1.1e-254 883.2 576 74.0
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.4e-254 882.9 576 74.3
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 2.4e-254 882.1 578 73.9
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 5.4e-254 880.9 592 73.0
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 1.2e-253 879.8 574 74.0
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.2e-253 879.8 570 74.6
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 4.6e-253 877.9 550 75.8
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 6.0e-253 877.5 571 74.4
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 7.8e-253 877.1 592 73.3
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 7.8e-253 877.1 575 74.3
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 1.0e-252 876.7 570 74.0
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 5.0e-252 874.4 576 74.5
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 6.6e-252 874.0 570 74.4
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 8.6e-252 873.6 555 76.4
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 1.1e-251 873.2 549 75.6
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 1.1e-251 873.2 574 73.3
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 4.3e-251 871.3 573 74.7
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 5.6e-251 870.9 570 74.2
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.2e-250 869.8 570 75.1
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 1.6e-250 869.4 562 74.7
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 2.1e-250 869.0 578 73.5
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 2.1e-250 869.0 600 71.2
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 2.1e-250 869.0 570 74.0
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 2.1e-250 869.0 577 73.3
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 4.7e-250 867.8 601 69.7
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 8.0e-250 867.1 600 72.5
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 1.4e-249 866.3 572 75.3
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 2.3e-249 865.5 572 74.5
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 4.0e-249 864.8 571 72.9
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 1.2e-248 863.2 573 72.8
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 1.2e-248 863.2 574 73.7
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 1.5e-248 862.8 571 73.0
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.0e-248 862.4 625 69.3
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 2.0e-248 862.4 568 72.0
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 2.6e-248 862.1 572 72.9
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 3.4e-248 861.7 569 74.3
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 9.8e-248 860.1 625 69.1
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 1.3e-247 859.8 574 72.8
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.7e-247 859.4 595 71.4
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 2.2e-247 859.0 558 74.9
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.9e-247 858.6 625 69.0
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 6.4e-247 857.4 570 72.6
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.9e-246 855.9 594 70.7
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 1.9e-246 855.9 550 73.8
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 9.2e-246 853.6 594 70.4
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.2e-245 853.2 570 73.3
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 1.6e-245 852.8 539 75.3
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 2.7e-245 852.0 570 74.2
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 2.3e-244 849.0 599 70.6
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 6.6e-244 847.4 600 70.2
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 6.6e-244 847.4 608 69.9
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 1.2e-242 843.2 675 63.9
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 6.2e-242 840.9 589 71.0
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 8.1e-242 840.5 552 74.6
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 6.8e-241 837.4 605 68.8
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 1.5e-240 836.3 550 74.0
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 7.3e-235 817.4 574 70.7
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 2.4e-233 812.4 604 68.2
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 1.5e-227 793.1 527 74.6
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 8.1e-226 787.3 579 65.5
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 8.1e-226 787.3 542 69.7
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 1.8e-217 759.6 498 74.7
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 8.7e-212 740.7 942 46.0
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 1.8e-204 716.5 577 61.0
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.4e-193 680.2 570 60.5
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 7.7e-192 674.5 571 60.6
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 2.7e-189 666.0 563 57.5
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 6.7e-188 661.4 516 64.9
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 9.7e-187 657.5 401 78.6
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.9e-184 648.3 434 78.6
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.4e-182 643.7 440 68.4
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 5.3e-161 572.0 342 83.0
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 5.0e-151 538.9 564 50.4
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.6e-149 533.9 444 68.5
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 3.0e-148 529.6 423 65.0
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 4.0e-132 476.1 308 76.6
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 4.7e-117 426.0 346 59.0
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 1.9e-105 387.5 450 44.4
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 5.4e-97 359.4 528 38.6
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 6.7e-95 352.4 473 41.6
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 7.6e-83 312.4 220 72.7
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 2.7e-80 303.9 249 63.5
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 2.5e-78 297.4 176 81.2
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 6.5e-74 282.7 380 41.6
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 9.7e-70 268.9 202 61.4
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 2.4e-68 264.2 218 59.2
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 2.4e-68 264.2 218 59.2
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 1.2e-64 251.9 171 69.0
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 2.0e-62 244.6 365 35.3
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.1e-57 228.8 164 66.5
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.4e-44 185.3 228 47.4
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 3.5e-43 180.6 110 85.5
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.2e-28 131.0 72 83.3
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 5.0e-26 123.6 77 71.4
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 6.6e-26 123.2 112 55.4
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 8.6e-26 122.9 73 74.0
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 9.5e-17 92.8 105 52.4
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 5.2e-15 87.0 43 86.0
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 3.7e-13 80.9 49 73.5
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 3.7e-13 80.9 49 73.5
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 1.3e-10 72.4 48 62.5
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 3.0e-10 71.2 48 62.5
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 8.6e-10 69.7 42 73.8
CARHR148430 Cardamine hirsuta HOM05D004337 ORTHO05D116339 6.2e-08 63.5 51 70.6


User provided reference genes

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