Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 2.5e-125 452.2 245 100.0
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 6.9e-123 444.1 245 98.4
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 5.3e-107 391.3 245 89.8
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 1.3e-100 370.2 245 87.3
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 1.3e-100 370.2 245 87.3
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 3.1e-99 365.5 245 86.1
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 3.2e-88 328.9 241 77.6
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 9.4e-88 327.4 217 85.3
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 4.2e-80 302.0 242 72.3
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.2e-79 300.4 228 72.4
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 2.7e-79 299.3 247 72.9
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 2.7e-79 299.3 247 72.9
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 3.6e-79 298.9 245 69.4
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 3.9e-78 295.4 242 72.7
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 4.4e-77 292.0 242 71.9
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 7.4e-77 291.2 242 69.4
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 8.2e-76 287.7 246 70.7
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 8.5e-73 277.7 246 66.7
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 2.2e-68 263.1 226 62.8
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 1.1e-64 250.8 228 61.0
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 6.3e-60 235.0 231 64.9
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 9.8e-53 211.1 238 50.4
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.1e-51 207.6 223 52.0
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 9.2e-51 204.5 242 50.8
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 1.2e-50 204.1 239 52.7
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.0e-50 203.4 239 51.9
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 2.0e-50 203.4 214 54.7
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 5.9e-50 201.8 242 50.0
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 3.8e-49 199.1 224 51.8
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 3.8e-49 199.1 216 53.2
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 3.8e-49 199.1 216 52.8
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 6.6e-49 198.4 238 49.2
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 6.6e-49 198.4 221 48.9
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 1.1e-48 197.6 218 53.7
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.9e-48 196.8 242 50.0
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.9e-48 196.8 242 50.0
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 2.5e-48 196.4 243 50.6
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 3.3e-48 196.1 226 50.9
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 4.3e-48 195.7 244 47.5
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 7.3e-48 194.9 225 51.6
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 7.3e-48 194.9 227 47.1
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 7.3e-48 194.9 236 49.6
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 1.6e-47 193.7 238 50.0
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 1.6e-47 193.7 235 50.2
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 2.1e-47 193.4 238 48.3
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.1e-47 193.4 225 51.6
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 2.1e-47 193.4 244 47.1
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 2.1e-47 193.4 223 46.6
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 2.8e-47 193.0 233 47.6
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 3.6e-47 192.6 224 46.9
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 6.1e-47 191.8 221 50.7
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 6.1e-47 191.8 225 51.1
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 8.0e-47 191.4 227 51.1
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 1.8e-46 190.3 226 49.6
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.8e-46 190.3 223 45.7
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 5.2e-46 188.7 220 46.8
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 8.9e-46 188.0 196 55.1
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 8.9e-46 188.0 215 48.8
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 8.9e-46 188.0 223 48.4
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 8.9e-46 188.0 221 49.3
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.2e-45 187.6 224 49.1
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 2.6e-45 186.4 229 48.9
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 3.4e-45 186.0 229 48.0
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 7.5e-45 184.9 230 46.1
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 7.5e-45 184.9 215 48.8
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 2.2e-44 183.3 223 47.5
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 2.9e-44 183.0 222 46.8
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 8.3e-44 181.4 212 49.5
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 1.4e-43 180.6 201 48.3
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 2.4e-43 179.9 217 48.4
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 2.4e-43 179.9 222 46.4
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 4.1e-43 179.1 242 49.2
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 7.0e-43 178.3 216 48.1
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 9.2e-43 177.9 212 47.2
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 1.2e-42 177.6 219 47.9
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 1.2e-42 177.6 226 46.0
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 1.6e-42 177.2 243 45.7
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 2.7e-42 176.4 225 44.9
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 2.7e-42 176.4 226 43.8
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 3.5e-42 176.0 238 47.1
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 5.9e-42 175.3 221 48.4
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 5.9e-42 175.3 215 47.4
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.3e-41 174.1 225 48.4
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.7e-41 173.7 221 46.6
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 6.6e-41 171.8 217 46.1
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 8.6e-41 171.4 212 47.2
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 1.1e-40 171.0 225 44.0
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.5e-40 170.6 229 45.9
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 1.5e-40 170.6 237 44.7
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 1.5e-40 170.6 194 49.5
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 2.5e-40 169.9 217 44.7
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 3.3e-40 169.5 236 45.8
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 5.6e-40 168.7 238 45.8
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 6.2e-39 165.2 216 43.5
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 3.1e-38 162.9 222 41.0
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 4.0e-38 162.5 238 43.3
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 5.2e-38 162.2 219 44.7
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 5.2e-38 162.2 224 45.1
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 1.5e-37 160.6 226 42.9
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 1.5e-37 160.6 235 44.3
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 2.9e-36 156.4 222 44.1
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 8.3e-36 154.8 223 39.9
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 5.4e-35 152.1 216 43.5
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 7.0e-35 151.8 222 43.7
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.6e-34 150.6 220 40.9
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 3.5e-34 149.4 216 43.1
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 1.7e-33 147.1 212 41.0
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 3.0e-33 146.4 170 45.9
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 8.1e-31 138.3 162 48.8
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 2.6e-29 133.3 123 58.5
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 5.8e-29 132.1 213 40.4
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 7.5e-29 131.7 220 37.7
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 4.9e-28 129.0 232 36.6
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 4.1e-27 125.9 228 36.0
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 1.6e-26 124.0 218 39.4
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 7.8e-26 121.7 120 56.7
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 1.1e-24 117.9 250 34.4
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 4.0e-22 109.4 218 38.5
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 2.2e-20 103.6 207 34.8
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 3.8e-20 102.8 223 34.1
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 3.8e-20 102.8 223 34.1
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 6.4e-20 102.1 223 33.6
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 4.1e-19 99.4 223 33.2
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 5.4e-19 99.0 108 49.1
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 4.6e-18 95.9 223 33.6
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.0e-17 94.7 223 30.9
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 2.5e-16 90.1 204 30.9
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 9.6e-16 88.2 198 31.8
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 3.6e-15 86.3 222 29.7
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 1.3e-12 77.8 200 30.0
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 1.3e-12 77.8 205 29.3
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 1.7e-12 77.4 213 31.0
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.1e-11 74.7 215 27.4
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 6.0e-10 68.9 194 28.9
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 3.3e-08 63.2 139 33.8
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 2.8e-07 60.1 84 35.7
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 6.2e-07 58.9 165 26.7
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 1.8e-06 57.4 73 50.7
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 9.0e-06 55.1 58 48.3
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 9.0e-06 55.1 73 47.9
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 9.0e-06 55.1 73 47.9


User provided reference genes

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