Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p42400 Brassica napus HOM05D001431 ORTHO05D042609 2.8e-85 318.5 156 100.0
BolC7t44767H Brassica oleracea HOM05D001431 ORTHO05D042609 3.5e-80 301.6 160 93.8
BraA06t25042Z Brassica rapa HOM05D001431 ORTHO05D001268 1.0e-15 87.4 65 66.2
C08p22950 Brassica napus HOM05D001431 ORTHO05D001268 1.4e-15 87.0 81 58.0
BcaB01g00850 Brassica carinata HOM05D001431 ORTHO05D001268 3.0e-15 85.9 81 59.3
BcaB01g00851 Brassica carinata HOM05D001431 ORTHO05D001268 3.0e-15 85.9 81 59.3
BolC8t49932H Brassica oleracea HOM05D001431 ORTHO05D001268 3.0e-15 85.9 64 67.2
BcaC07g39288 Brassica carinata HOM05D001431 ORTHO05D001268 3.9e-15 85.5 64 65.6
A06p19620 Brassica napus HOM05D001431 ORTHO05D001268 1.1e-14 84.0 62 67.7
Sp5g13960 Schrenkiella parvula HOM05D001431 ORTHO05D001268 1.5e-14 83.6 46 78.3
Carub.0005s1413 Capsella rubella HOM05D001431 ORTHO05D001268 2.2e-13 79.7 45 75.6
Aa31LG4G16660 Aethionema arabicum HOM05D001431 ORTHO05D001268 6.3e-13 78.2 50 68.0
Carub.0008s2358 Capsella rubella HOM05D001431 ORTHO05D001268 1.2e-11 73.9 64 56.2
THA.LOC104808387 Tarenaya hassleriana HOM05D001431 ORTHO05D001268 1.6e-11 73.6 44 75.0
Sp2g26010 Schrenkiella parvula HOM05D001431 ORTHO05D001268 2.6e-11 72.8 65 58.5
AL5G27340 Arabidopsis lyrata HOM05D001431 ORTHO05D001268 4.5e-11 72.0 41 78.0
Thhalv10010820m.g Eutrema salsugineum HOM05D001431 ORTHO05D001268 4.5e-11 72.0 46 71.7
Aa31LG11G840 Aethionema arabicum HOM05D001431 ORTHO05D001268 5.9e-11 71.6 40 77.5
CARHR276660 Cardamine hirsuta HOM05D001431 ORTHO05D001268 5.9e-11 71.6 42 76.2
AL8G39870 Arabidopsis lyrata HOM05D001431 ORTHO05D001268 7.7e-11 71.2 40 80.0
AT5G62865 Arabidopsis thaliana HOM05D001431 ORTHO05D001268 7.7e-11 71.2 40 80.0
AT3G48020 Arabidopsis thaliana HOM05D001431 ORTHO05D001268 1.0e-10 70.9 41 75.6
CARHR156750 Cardamine hirsuta HOM05D001431 ORTHO05D001268 1.3e-10 70.5 43 72.1
A02p42530 Brassica napus HOM05D001431 ORTHO05D001268 2.9e-10 69.3 42 71.4
C02p62450 Brassica napus HOM05D001431 ORTHO05D001268 2.9e-10 69.3 42 71.4
BraA02t09182Z Brassica rapa HOM05D001431 ORTHO05D001268 2.9e-10 69.3 42 71.4
BcaC03g18175 Brassica carinata HOM05D001431 ORTHO05D001268 1.1e-09 67.4 42 69.0
BolC2t12300H Brassica oleracea HOM05D001431 ORTHO05D001268 1.1e-09 67.4 42 69.0
A06p29610 Brassica napus HOM05D001431 ORTHO05D001268 1.5e-09 67.0 42 73.8
BraA06t25907Z Brassica rapa HOM05D001431 ORTHO05D001268 1.5e-09 67.0 42 73.8
Thhalv10005490m.g Eutrema salsugineum HOM05D001431 ORTHO05D001268 1.5e-09 67.0 42 73.8
BcaB07g29856 Brassica carinata HOM05D001431 ORTHO05D001268 1.9e-09 66.6 45 66.7
Cpa.g.sc124.31 Carica papaya HOM05D001431 ORTHO05D001268 9.4e-09 64.3 45 68.9
Nitab4.5_0001952g0050 Nicotiana tabacum HOM05D001431 ORTHO05D001268 9.4e-09 64.3 48 58.3
PGSC0003DMG400000503 Solanum tuberosum HOM05D001431 ORTHO05D001268 2.7e-08 62.8 40 62.5
BcaC01g02530 Brassica carinata HOM05D001431 ORTHO05D001268 3.6e-08 62.4 41 70.7
BolC3t18641H Brassica oleracea HOM05D001431 ORTHO05D001268 3.6e-08 62.4 41 70.7
CiPaw.11G029500 Carya illinoinensis HOM05D001431 ORTHO05D001268 3.6e-08 62.4 47 61.7
Nitab4.5_0007879g0040 Nicotiana tabacum HOM05D001431 ORTHO05D001268 4.7e-08 62.0 48 54.2
ClCG06G016870 Citrullus lanatus HOM05D001431 ORTHO05D001268 6.1e-08 61.6 38 73.7
VMungo1215G3018 Vigna mungo HOM05D001431 ORTHO05D001268 6.1e-08 61.6 45 62.2
MD14G1183900 Malus domestica HOM05D001431 ORTHO05D001268 8.0e-08 61.2 44 63.6
Psat1g059800 Pisum sativum HOM05D001431 ORTHO05D001268 8.0e-08 61.2 36 66.7
Atru.chr9.2435 Acer truncatum HOM05D001431 ORTHO05D001268 1.0e-07 60.8 46 58.7
Ah.02g110420 Amaranthus hybridus HOM05D001431 ORTHO05D001268 1.0e-07 60.8 39 69.2
MELO3C017105.2 Cucumis melo HOM05D001431 ORTHO05D001268 1.0e-07 60.8 38 73.7
MD00G1171700 Malus domestica HOM05D001431 ORTHO05D001268 1.0e-07 60.8 39 69.2
PGR083G2290 Punica granatum HOM05D001431 ORTHO05D001268 1.0e-07 60.8 39 66.7
Rhsim08G0056500 Rhododendron simsii HOM05D001431 ORTHO05D001268 1.0e-07 60.8 41 61.0
CsaV3_1G001650 Cucumis sativus L. HOM05D001431 ORTHO05D001268 1.4e-07 60.5 39 69.2
Sed0019889 Sechium edule HOM05D001431 ORTHO05D001268 1.8e-07 60.1 38 71.1
CSS0003284 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 2.3e-07 59.7 46 60.9
Haze_07487 Corylus avellana HOM05D001431 ORTHO05D001268 2.3e-07 59.7 45 64.4
Rhsim12G0163100 Rhododendron simsii HOM05D001431 ORTHO05D001268 2.3e-07 59.7 40 62.5
TPR.G2305 Trifolium pratense HOM05D001431 ORTHO05D001268 2.3e-07 59.7 40 62.5
TWI15G0122 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 2.3e-07 59.7 32 78.1
Lj1g0003513 Lotus japonicus HOM05D001431 ORTHO05D001268 3.0e-07 59.3 44 54.5
Lalb_Chr08g0236341 Lupinus albus HOM05D001431 ORTHO05D001268 3.0e-07 59.3 31 77.4
Potri.015G073800 Populus trichocarpa HOM05D001431 ORTHO05D001268 3.0e-07 59.3 39 66.7
Sed0019868 Sechium edule HOM05D001431 ORTHO05D001268 3.0e-07 59.3 45 60.0
Cfa019090 Carpinus fangiana HOM05D001431 ORTHO05D001268 4.0e-07 58.9 48 58.3
Phvul.003G198600 Phaseolus vulgaris HOM05D001431 ORTHO05D001268 5.2e-07 58.5 45 57.8
EL10Ac5g10788 Beta vulgaris HOM05D001431 ORTHO05D001268 6.7e-07 58.2 45 57.8
Cfa007450 Carpinus fangiana HOM05D001431 ORTHO05D001268 6.7e-07 58.2 33 66.7
CDE10G0322 Ceratophyllum demersum HOM05D000154 ORTHO05D000092 6.7e-07 58.2 33 72.7
FAN04G2146 Fragaria x ananassa HOM05D001431 ORTHO05D001268 6.7e-07 58.2 42 64.3
TWI60G1602 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 6.7e-07 58.2 32 71.9
EL10Ac5g10789 Beta vulgaris HOM05D001431 ORTHO05D001268 8.8e-07 57.8 37 70.3
CSS0036657 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 8.8e-07 57.8 36 69.4
CDE10G0680 Ceratophyllum demersum HOM05D001431 ORTHO05D001268 8.8e-07 57.8 33 69.7
ClCG01G012990 Citrullus lanatus HOM05D001431 ORTHO05D001268 8.8e-07 57.8 38 68.4
FAN08G1461 Fragaria x ananassa HOM05D001431 ORTHO05D001268 8.8e-07 57.8 40 65.0
Gohir.A09G027600 Gossypium hirsutum HOM05D001431 ORTHO05D001268 8.8e-07 57.8 76 43.4
Manes.14G067900 Manihot esculenta HOM05D001431 ORTHO05D001268 8.8e-07 57.8 35 77.1
Sopen02g031790 Solanum pennellii HOM05D001431 ORTHO05D001268 8.8e-07 57.8 40 60.0
TWI15G0604 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 8.8e-07 57.8 32 75.0
Aa31LG11G9500 Aethionema arabicum HOM05D001431 ORTHO05D001268 1.2e-06 57.4 50 54.0
Ca_04210_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 1.2e-06 57.4 37 54.1
COL.COLO4_04371 Corchorus olitorius HOM05D001431 ORTHO05D001268 1.2e-06 57.4 45 53.3
Glyma.17G091400 Glycine max HOM05D001431 ORTHO05D001268 1.2e-06 57.4 45 60.0
Gohir.D09G027000 Gossypium hirsutum HOM05D001431 ORTHO05D001268 1.2e-06 57.4 76 43.4
Gorai.006G031400 Gossypium raimondii HOM05D001431 ORTHO05D001268 1.2e-06 57.4 76 43.4
Lj1g0025958 Lotus japonicus HOM05D001431 ORTHO05D001268 1.2e-06 57.4 41 63.4
Sc04g0001950 Simmondsia chinensis HOM05D001431 ORTHO05D001268 1.2e-06 57.4 72 45.8
AT5G14895 Arabidopsis thaliana HOM05D001431 ORTHO05D001268 1.5e-06 57.0 33 66.7
MELO3C002250.2 Cucumis melo HOM05D001431 ORTHO05D001268 1.5e-06 57.0 38 68.4
Duzib147G0546 Durio zibethinus HOM05D001431 ORTHO05D001268 1.5e-06 57.0 40 55.0
Lj2g0028250 Lotus japonicus HOM05D001431 ORTHO05D001268 1.5e-06 57.0 41 53.7
Nn3g16930 Nelumbo nucifera HOM05D001431 ORTHO05D001268 1.5e-06 57.0 33 69.7
Sabra15G0097900 Salix brachista HOM05D001431 ORTHO05D001268 1.5e-06 57.0 37 67.6
Sed0010044 Sechium edule HOM05D001431 ORTHO05D001268 1.5e-06 57.0 37 62.2
VMungo1309G2303 Vigna mungo HOM05D001431 ORTHO05D001268 1.5e-06 57.0 36 66.7
ATR0580G431 Amborella trichopoda HOM05D001431 ORTHO05D001268 2.0e-06 56.6 38 63.2
BNapus_Darmor_BZH_scaffold_119p00060 Brassica napus HOM05D001431 ORTHO05D001268 2.0e-06 56.6 43 58.1
BNapus_Darmor_BZH_scaffold_97p00370 Brassica napus HOM05D001431 ORTHO05D001268 2.0e-06 56.6 43 58.1
CARHR075540 Cardamine hirsuta HOM05D001431 ORTHO05D001268 2.0e-06 56.6 46 56.5
Eucgr.K02860 Eucalyptus grandis HOM05D001431 ORTHO05D001268 2.0e-06 56.6 36 63.9
Glyma.05G036000 Glycine max HOM05D001431 ORTHO05D001268 2.0e-06 56.6 36 69.4
Prupe.5G176600 Prunus persica HOM05D001431 ORTHO05D001268 2.0e-06 56.6 42 64.3
QL10p013648 Quercus lobata HOM05D001431 ORTHO05D001268 2.0e-06 56.6 38 63.2
THA.LOC104802406 Tarenaya hassleriana HOM05D001431 ORTHO05D001268 2.0e-06 56.6 39 64.1
Thecc.03G008300 Theobroma cacao HOM05D001431 ORTHO05D001268 2.0e-06 56.6 50 54.0
AL6G25670 Arabidopsis lyrata HOM05D001431 ORTHO05D001268 2.6e-06 56.2 33 63.6
Carub.0006s1304 Capsella rubella HOM05D001101 ORTHO05D000893 2.6e-06 56.2 33 63.6
Carub.0008s0841 Capsella rubella HOM05D001431 ORTHO05D001268 2.6e-06 56.2 33 69.7
Glyma.04G180800 Glycine max HOM05D001431 ORTHO05D001268 2.6e-06 56.2 36 63.9
MBI14_g35398_MAGBIO Magnolia biondii HOM05D001431 ORTHO05D001268 2.6e-06 56.2 41 63.4
RcHm_v2.0_Chr7g0193921 Rosa chinensis HOM05D001431 ORTHO05D001268 2.6e-06 56.2 40 65.0
Solyc02g087030.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 2.6e-06 56.2 40 57.5
Solyc05g039960.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 2.6e-06 56.2 40 60.0
SGA_v2.0_scaffold90G27977 Striga asiatica HOM05D001431 ORTHO05D001268 2.6e-06 56.2 30 80.0
BcaC09g47663 Brassica carinata HOM05D001431 ORTHO05D001268 3.3e-06 55.8 31 74.2
BolC1t05955H Brassica oleracea HOM05D001431 ORTHO05D001268 3.3e-06 55.8 31 74.2
CAN.G206.43 Capsicum annuum HOM05D001431 ORTHO05D001268 3.3e-06 55.8 40 57.5
Ciclev10022556m.g Citrus clementina HOM05D001431 ORTHO05D001268 3.3e-06 55.8 36 66.7
ECA232G1278 Erigeron canadensis HOM05D001431 ORTHO05D001268 3.3e-06 55.8 69 44.9
FvH4_5g05080 Fragaria vesca HOM05D001431 ORTHO05D001268 3.3e-06 55.8 35 68.6
FAN18G4037 Fragaria x ananassa HOM05D001431 ORTHO05D001268 3.3e-06 55.8 35 68.6
Sed0025664 Sechium edule HOM05D001431 ORTHO05D001268 3.3e-06 55.8 38 65.8
BNapus_Darmor_BZH_scaffold_133p00050 Brassica napus HOM05D001431 ORTHO05D001268 4.4e-06 55.5 31 74.2
BraA01t04663Z Brassica rapa HOM05D001431 ORTHO05D001268 4.4e-06 55.5 31 74.2
CANSAT64G0073 Cannabis sativa HOM05D001431 ORTHO05D001268 4.4e-06 55.5 51 49.0
CsaV3_1G008340 Cucumis sativus L. HOM05D001431 ORTHO05D001268 4.4e-06 55.5 35 71.4
Lalb_Chr13g0297891 Lupinus albus HOM05D001431 ORTHO05D001268 4.4e-06 55.5 48 54.2
Potri.012G078300 Populus trichocarpa HOM05D001431 ORTHO05D001268 4.4e-06 55.5 40 60.0
Rhsim08G0170200 Rhododendron simsii HOM05D001431 ORTHO05D001268 4.4e-06 55.5 31 67.7
SalBow7G1530 Salvia bowleyana HOM05D001431 ORTHO05D001268 4.4e-06 55.5 44 61.4
SGA_v2.0_scaffold224G42972 Striga asiatica HOM05D001431 ORTHO05D001268 4.4e-06 55.5 41 65.9
THA.LOC104821066 Tarenaya hassleriana HOM05D001431 ORTHO05D001268 4.4e-06 55.5 45 53.3
Zm00001eb279820 Zea mays HOM05D001431 ORTHO05D001268 4.4e-06 55.5 41 56.1
Aqoxy3G03043 Aquilegia oxysepala HOM05D001431 ORTHO05D001268 5.7e-06 55.1 37 62.2
AL3G10750 Arabidopsis lyrata HOM05D001431 ORTHO05D001268 5.7e-06 55.1 33 66.7
AUR62008241 Chenopodium quinoa HOM05D001431 ORTHO05D001268 5.7e-06 55.1 41 58.5
AUR62030993 Chenopodium quinoa HOM05D001431 ORTHO05D001268 5.7e-06 55.1 41 58.5
Migut.I00039 Erythranthe guttata HOM05D001431 ORTHO05D001268 5.7e-06 55.1 28 85.7
Hma1.2p1_0176F.1_g077720 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 5.7e-06 55.1 35 65.7
Lj9P451T20 Lonicera japonica HOM05D001431 ORTHO05D001268 5.7e-06 55.1 38 63.2
Manes.06G102700 Manihot esculenta HOM05D001431 ORTHO05D001268 5.7e-06 55.1 35 71.4
Medtr6g007727 Medicago truncatula HOM05D001431 ORTHO05D001268 5.7e-06 55.1 46 50.0
Phvul.009G180401 Phaseolus vulgaris HOM05D001431 ORTHO05D001268 5.7e-06 55.1 36 63.9
CSS0036833 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 7.5e-06 54.7 28 82.1
Thhalv10012875m.g Eutrema salsugineum HOM05D001101 ORTHO05D000893 7.5e-06 54.7 39 59.0
PSO513G0170 Papaver somniferum HOM05D001431 ORTHO05D001268 7.5e-06 54.7 45 53.3
QL02p077134 Quercus lobata HOM05D001431 ORTHO05D001268 7.5e-06 54.7 35 60.0
SalBow5G0618 Salvia bowleyana HOM05D001431 ORTHO05D001268 7.5e-06 54.7 28 82.1
SalBow7G2574 Salvia bowleyana HOM05D001431 ORTHO05D001268 7.5e-06 54.7 37 64.9
SHI07895 Sapria himalayana HOM05D001431 ORTHO05D001268 7.5e-06 54.7 34 73.5
Sed0006170 Sechium edule HOM05D001431 ORTHO05D001268 7.5e-06 54.7 38 63.2
Aa31LG11G14610 Aethionema arabicum HOM05D001101 ORTHO05D000893 9.7e-06 54.3 33 66.7
AT3G01430 Arabidopsis thaliana HOM05D001431 ORTHO05D001268 9.7e-06 54.3 34 61.8
Ca_21904_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 9.7e-06 54.3 43 60.5
Ca_21922_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 9.7e-06 54.3 43 60.5
Dinv09164 Davidia involucrata HOM05D001431 ORTHO05D001268 9.7e-06 54.3 37 64.9
Thhalv10021620m.g Eutrema salsugineum HOM05D001431 ORTHO05D001268 9.7e-06 54.3 39 59.0
Glyma.06G184300 Glycine max HOM05D001431 ORTHO05D001268 9.7e-06 54.3 35 62.9
Medtr4g106650 Medicago truncatula HOM05D001431 ORTHO05D001268 9.7e-06 54.3 38 63.2
PSO063G3193 Papaver somniferum HOM05D001431 ORTHO05D001268 9.7e-06 54.3 36 63.9
PSO339G0883 Papaver somniferum HOM05D001431 ORTHO05D001268 9.7e-06 54.3 45 53.3
PSO832G1465 Papaver somniferum HOM05D001431 ORTHO05D001268 9.7e-06 54.3 36 63.9
Prupe.3G281600 Prunus persica HOM05D001431 ORTHO05D001268 9.7e-06 54.3 35 62.9
Sabra03G0069000 Salix brachista HOM05D001431 ORTHO05D001268 9.7e-06 54.3 30 66.7
Thecc.04G006600 Theobroma cacao HOM05D001431 ORTHO05D001268 9.7e-06 54.3 39 56.4
TPR.G37484 Trifolium pratense HOM05D001431 ORTHO05D001268 9.7e-06 54.3 36 66.7
TAR622G1254 Trochodendron aralioides HOM05D001431 ORTHO05D001268 9.7e-06 54.3 46 56.5


User provided reference genes

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