Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 7.7e-110 400.6 216 100.0
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 3.5e-86 322.0 176 99.4
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 2.0e-81 306.2 176 95.5
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 2.0e-81 306.2 176 95.5
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 3.2e-55 219.2 199 69.3
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.3e-50 203.0 185 67.6
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 8.9e-50 201.1 172 70.3
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 1.7e-48 196.8 155 72.3
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 5.6e-44 181.8 154 69.5
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-42 177.2 175 62.9
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 6.9e-42 174.9 150 68.7
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 2.2e-40 169.9 175 61.1
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 2.2e-40 169.9 175 61.1
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 7.1e-39 164.9 187 62.0
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 1.0e-37 161.0 190 58.4
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.1e-35 153.3 187 55.6
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 5.8e-33 145.2 147 62.6
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 5.8e-33 145.2 147 62.6
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 3.8e-32 142.5 158 60.1
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 1.9e-31 140.2 175 51.4
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.4e-31 139.8 180 50.6
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 2.7e-30 136.3 169 55.6
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 3.9e-29 132.5 181 53.6
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 9.6e-28 127.9 171 55.0
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.1e-27 126.7 179 51.4
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 3.6e-27 125.9 182 51.1
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 3.6e-27 125.9 184 50.5
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-26 124.4 181 51.9
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 1.1e-26 124.4 181 51.9
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 2.4e-26 123.2 181 51.9
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 2.4e-26 123.2 171 52.0
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 2.4e-26 123.2 181 49.7
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 2.4e-26 123.2 181 49.7
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 3.1e-26 122.9 179 49.7
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 3.1e-26 122.9 183 48.6
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.0e-26 122.5 203 41.4
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 1.2e-25 120.9 183 49.2
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 2.6e-25 119.8 169 51.5
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 7.6e-25 118.2 168 52.4
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 9.9e-25 117.9 188 45.2
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 9.9e-25 117.9 181 50.3
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.9e-25 117.9 203 40.9
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 1.3e-24 117.5 193 41.5
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 2.9e-24 116.3 203 41.4
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 4.9e-24 115.5 193 40.4
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 2.4e-23 113.2 169 49.1
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 2.4e-23 113.2 121 60.3
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 2.4e-23 113.2 169 48.5
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 2.4e-23 113.2 184 47.8
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 3.2e-23 112.8 169 48.5
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 5.5e-23 112.1 118 59.3
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 7.1e-23 111.7 198 39.9
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 9.3e-23 111.3 175 44.6
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 2.1e-22 110.2 169 47.9
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 2.7e-22 109.8 120 60.0
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 4.6e-22 109.0 187 41.7
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.0e-22 108.6 187 42.8
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.0e-22 108.6 182 43.4
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.9e-22 108.2 187 41.7
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.9e-22 108.2 187 42.2
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 1.0e-21 107.8 119 58.0
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 1.0e-21 107.8 119 58.0
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 1.0e-21 107.8 196 40.3
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 1.0e-21 107.8 190 44.2
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.3e-21 107.5 187 42.2
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 2.3e-21 106.7 188 43.1
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.3e-21 106.7 187 42.2
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.3e-21 106.7 187 41.7
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.0e-21 106.3 187 41.7
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 3.9e-21 105.9 201 40.3
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.1e-21 105.5 187 41.2
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 6.7e-21 105.1 203 41.9
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 8.7e-21 104.8 184 39.1
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.5e-20 104.0 182 42.3
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 1.5e-20 104.0 190 41.6
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.3e-20 102.8 187 40.1
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 4.3e-20 102.4 191 40.3
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 4.3e-20 102.4 191 42.4
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 7.4e-20 101.7 197 38.1
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 1.3e-19 100.9 185 40.0
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.3e-19 100.9 198 41.4
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 1.3e-19 100.9 192 40.6
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 1.6e-19 100.5 190 39.5
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.6e-19 100.5 190 39.5
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 2.8e-19 99.8 190 39.5
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 8.1e-19 98.2 190 40.0
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 8.1e-19 98.2 191 40.3
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 8.1e-19 98.2 197 41.1
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 1.1e-18 97.8 196 40.3
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.1e-18 97.8 198 38.4
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 1.4e-18 97.4 100 56.0
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 2.4e-18 96.7 200 40.0
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.4e-18 96.7 172 41.3
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 4.0e-18 95.9 186 38.2
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.2e-17 94.4 151 40.4
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 1.5e-17 94.0 189 39.7
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.0e-17 93.6 192 38.0
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 2.6e-17 93.2 236 33.9
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 3.4e-17 92.8 181 42.0
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 3.4e-17 92.8 184 40.2
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 3.4e-17 92.8 188 37.8
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 5.8e-17 92.0 201 38.3
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 5.8e-17 92.0 183 40.4
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 1.0e-16 91.3 178 36.5
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 1.7e-16 90.5 181 40.9
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 1.7e-16 90.5 190 41.1
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 2.2e-16 90.1 179 36.9
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 4.9e-16 89.0 195 38.5
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 6.5e-16 88.6 182 38.5
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.4e-15 87.4 204 35.3
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.9e-15 87.0 179 36.3
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 1.9e-15 87.0 176 40.9
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 1.9e-15 87.0 190 37.4
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.9e-15 87.0 192 35.4
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.9e-15 87.0 192 35.4
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 1.9e-15 87.0 183 39.9
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 4.2e-15 85.9 163 41.1
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 7.1e-15 85.1 124 44.4
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 7.1e-15 85.1 158 36.7
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 7.1e-15 85.1 186 36.6
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 9.3e-15 84.7 196 39.3
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 9.3e-15 84.7 186 36.0
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.6e-14 84.0 158 38.0
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 2.7e-14 83.2 195 34.4
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 4.6e-14 82.4 206 33.0
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 7.9e-14 81.6 174 33.3
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 1.0e-13 81.3 201 36.3
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.0e-13 81.3 190 34.7
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 1.0e-13 81.3 194 36.1
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 1.0e-13 81.3 186 35.5
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 1.8e-13 80.5 181 34.8
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 3.0e-13 79.7 203 36.5
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 5.1e-13 79.0 190 34.2
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 5.1e-13 79.0 201 36.8
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 6.7e-13 78.6 86 58.1
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 1.1e-12 77.8 218 32.1
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.5e-12 76.6 131 42.7
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.5e-12 76.6 131 42.7
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 9.6e-12 74.7 193 35.8
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 9.6e-12 74.7 191 36.1
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 3.7e-11 72.8 176 36.4
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 3.7e-11 72.8 152 37.5
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 1.1e-10 71.2 154 39.0
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 3.1e-10 69.7 215 33.5
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 6.9e-10 68.6 192 31.8
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 6.9e-10 68.6 93 41.9
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 1.5e-09 67.4 50 72.0
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 3.4e-09 66.2 77 46.8
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 4.5e-09 65.9 159 34.6
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 7.6e-09 65.1 159 34.6
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 1.0e-08 64.7 153 33.3
BolC2t06459H Brassica oleracea HOM05D004036 ORTHO05D004576 1.7e-08 63.9 102 47.1
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 3.8e-08 62.8 238 28.2
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 3.8e-08 62.8 133 37.6
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.5e-08 61.6 53 60.4
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.5e-08 61.6 53 60.4
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 1.1e-07 61.2 133 35.3
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 1.4e-07 60.8 169 34.9
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.9e-07 60.5 179 34.6
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 9.3e-07 58.2 140 32.1
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 2.1e-06 57.0 159 32.7
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 6.1e-06 55.5 198 30.8


User provided reference genes

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