Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 0.0e+00 1980.7 1002 100.0
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 0.0e+00 1979.9 1002 99.9
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 0.0e+00 1976.8 1002 99.8
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 0.0e+00 1734.9 1015 90.2
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 0.0e+00 1733.8 1015 90.3
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 0.0e+00 1117.4 1097 63.0
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 1.2e-194 684.5 1162 45.2
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 1.2e-192 677.9 1158 44.8
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.7e-191 674.1 1187 44.0
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.2e-191 673.7 1068 46.3
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 8.3e-191 671.8 1167 44.4
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.4e-190 671.0 1159 45.5
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 5.7e-184 649.0 1190 44.1
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 8.3e-183 645.2 1163 43.9
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 2.0e-168 597.4 1153 41.2
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 5.4e-150 536.2 1082 40.7
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 6.0e-149 532.7 1082 40.6
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.1e-145 521.9 1118 39.3
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 1.4e-145 521.5 1082 40.1
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 3.1e-145 520.4 1083 40.0
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 3.1e-145 520.4 1083 40.0
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 9.0e-137 492.3 1116 38.9
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 2.4e-134 484.2 1118 39.0
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 1.1e-129 468.8 1104 38.5
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 3.4e-112 410.6 1081 34.6
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 1.8e-108 398.3 278 77.0
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 8.6e-79 299.7 696 38.5
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.2e-75 289.3 697 38.0
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 4.7e-53 214.2 1265 26.4
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 2.2e-50 205.3 1256 27.0
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 4.9e-50 204.1 1249 26.8
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 3.6e-45 188.0 1256 27.0
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 7.6e-43 180.3 1249 26.9
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.1e-41 176.4 1244 26.1
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 7.1e-41 173.7 1261 25.6
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 9.2e-41 173.3 1293 25.1
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 6.0e-40 170.6 1244 26.1
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 5.1e-39 167.5 1260 24.8
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 6.6e-39 167.2 1245 26.1
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 3.1e-36 158.3 1259 24.9
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 3.1e-36 158.3 1263 25.1
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.9e-36 157.1 1254 24.3
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.2e-35 156.4 1255 24.9
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.5e-35 156.0 1259 24.6
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 2.0e-35 155.6 758 28.6
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 2.0e-35 155.6 1274 24.6
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 5.8e-35 154.1 1270 25.3
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 2.9e-34 151.8 755 29.4
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 6.4e-34 150.6 1293 24.0
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 8.4e-34 150.2 1294 24.3
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 1.1e-33 149.8 1274 25.0
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.6e-32 146.0 626 30.5
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 2.7e-32 145.2 1290 24.3
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 1.3e-31 142.9 1269 25.4
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 3.9e-31 141.4 1125 25.4
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 2.2e-26 125.6 1176 24.0
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 2.9e-26 125.2 1210 23.9
BcaNung04839 Brassica carinata HOM05D004021 ORTHO05D003767 4.9e-26 124.4 77 87.0
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.4e-25 122.1 1309 24.1
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 1.9e-22 112.5 1154 23.9
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 4.3e-22 111.3 373 31.9
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.3e-22 111.3 557 26.9
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 5.6e-22 110.9 1172 23.4
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 9.6e-22 110.2 554 28.9
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 2.4e-20 105.5 602 26.6
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 6.9e-20 104.0 1125 24.0
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 2.2e-18 99.0 1191 24.0
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 3.8e-18 98.2 535 27.5
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 6.4e-18 97.4 1198 23.8
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 8.4e-18 97.1 1329 23.3
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 1.9e-17 95.9 1194 23.7
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 2.5e-17 95.5 1219 23.4
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 2.5e-17 95.5 880 23.0
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 6.0e-16 90.9 1208 23.8
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 7.9e-16 90.5 1213 22.6
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 1.8e-15 89.4 85 47.1
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 1.8e-15 89.4 1229 24.1
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 3.0e-15 88.6 1214 23.1
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.9e-14 85.9 1215 23.3
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 9.6e-14 83.6 104 39.4
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 9.6e-14 83.6 505 26.9
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 9.6e-14 83.6 1212 23.3
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.3e-13 83.2 530 26.6
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 2.8e-13 82.0 580 28.1
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 3.7e-13 81.6 1226 23.3
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 4.8e-13 81.3 505 26.1
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 1.4e-12 79.7 700 25.3
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 2.4e-12 79.0 1135 21.9
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 4.0e-12 78.2 1059 23.3
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 4.0e-12 78.2 934 24.1
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 9.0e-12 77.0 1243 22.2
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 2.6e-11 75.5 514 24.3
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 4.5e-11 74.7 1038 23.4
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 4.5e-11 74.7 1189 23.1
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 5.8e-11 74.3 1126 21.9
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 1.0e-10 73.6 985 23.7
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.3e-10 73.2 553 26.0
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.3e-10 73.2 107 37.4
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 2.2e-10 72.4 84 40.5
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 2.9e-10 72.0 1201 22.3
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 3.8e-10 71.6 79 41.8
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 6.5e-10 70.9 82 42.7
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.1e-09 70.1 1188 22.6
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.9e-09 69.3 1243 23.4
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 3.2e-09 68.6 93 35.5
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 3.2e-09 68.6 96 35.4
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 4.2e-09 68.2 260 30.0
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 4.2e-09 68.2 83 41.0
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 5.5e-09 67.8 211 29.4
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 9.3e-09 67.0 133 32.3
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 9.3e-09 67.0 1212 22.8
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.2e-08 66.6 1285 22.1
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.2e-08 66.6 93 37.6
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 1.2e-08 66.6 289 27.3
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.6e-08 66.2 1028 22.7
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.6e-08 66.2 546 24.4
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.1e-08 65.9 1175 21.7
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.7e-08 65.5 1190 23.0
A10p26230 Brassica napus HOM05D018796 ORTHO05D023922 3.5e-08 65.1 135 31.1
BraA10t44680Z Brassica rapa HOM05D018796 ORTHO05D023922 3.5e-08 65.1 135 31.1
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.5e-08 65.1 73 42.5
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 3.5e-08 65.1 114 32.5
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 4.6e-08 64.7 538 23.6
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 6.0e-08 64.3 77 36.4
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 6.0e-08 64.3 1187 22.2
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 1.3e-07 63.2 1187 22.3
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 1.3e-07 63.2 1184 23.1
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 1.8e-07 62.8 212 30.2
BcaC04g19217 Brassica carinata HOM05D018796 ORTHO05D023922 2.3e-07 62.4 135 31.9
C09p65300 Brassica napus HOM05D018796 ORTHO05D023922 2.3e-07 62.4 135 31.9
BolC9t59357H Brassica oleracea HOM05D018796 ORTHO05D023922 2.3e-07 62.4 135 31.9
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 3.9e-07 61.6 90 44.4
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 5.1e-07 61.2 68 38.2
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 8.7e-07 60.5 847 25.0
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 1.1e-06 60.1 288 27.4
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.5e-06 59.7 1181 22.4
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 1.5e-06 59.7 63 44.4
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.9e-06 59.3 293 28.7
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 1.9e-06 59.3 1176 22.3
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 1.9e-06 59.3 64 40.6
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.3e-06 58.2 293 28.7
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.3e-06 58.2 293 28.7
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 4.3e-06 58.2 273 24.9
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.7e-06 57.8 184 32.1
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.7e-06 57.8 184 32.1
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 7.4e-06 57.4 287 25.1
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.4e-06 57.4 98 30.6
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 9.7e-06 57.0 577 23.7


User provided reference genes

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