Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 3.8e-171 604.7 310 100.0
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 2.8e-121 439.1 258 89.9
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.1e-120 437.2 226 98.7
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 2.1e-113 412.9 214 98.1
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 4.8e-113 411.8 214 97.7
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 4.8e-113 411.8 214 97.7
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.4e-112 409.5 214 95.8
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.8e-110 402.1 214 94.4
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 4.2e-109 398.7 214 94.4
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 9.3e-109 397.5 214 92.5
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 1.2e-108 397.1 214 94.9
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 2.3e-107 392.9 261 80.5
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 3.0e-107 392.5 214 92.1
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.1e-106 390.6 214 92.5
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.1e-98 364.0 214 84.6
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 2.5e-98 362.8 214 84.1
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.3e-98 362.5 207 86.0
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.3e-98 362.5 216 86.1
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 1.7e-97 360.1 214 84.1
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.7e-97 360.1 208 86.5
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 2.8e-97 359.4 214 83.2
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 2.8e-97 359.4 212 84.4
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 4.8e-97 358.6 214 83.2
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 4.8e-97 358.6 205 86.8
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 8.2e-97 357.8 219 83.6
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 1.4e-96 357.1 214 83.6
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.8e-96 356.7 214 81.8
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 1.8e-96 356.7 214 83.2
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.4e-96 356.3 208 86.1
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.1e-96 355.5 204 83.3
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 5.3e-96 355.1 214 82.7
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 5.3e-96 355.1 214 81.8
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 5.3e-96 355.1 217 82.0
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 6.9e-96 354.8 214 82.7
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 9.1e-96 354.4 214 81.8
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 9.1e-96 354.4 206 86.4
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 9.1e-96 354.4 208 85.1
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.2e-95 354.0 208 85.6
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.2e-95 354.0 214 80.8
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 1.5e-95 353.6 216 81.0
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 2.0e-95 353.2 214 82.7
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 2.0e-95 353.2 209 85.6
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 4.5e-95 352.1 214 83.6
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 4.5e-95 352.1 222 79.7
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 5.9e-95 351.7 213 81.2
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 5.9e-95 351.7 208 85.1
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 5.9e-95 351.7 214 82.7
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 5.9e-95 351.7 217 82.9
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 7.7e-95 351.3 214 81.8
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 1.0e-94 350.9 203 84.7
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.2e-94 349.7 203 84.7
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 2.2e-94 349.7 204 85.3
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 2.2e-94 349.7 215 80.9
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 5.0e-94 348.6 204 85.3
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 6.5e-94 348.2 208 84.6
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 8.5e-94 347.8 230 77.0
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.1e-93 347.4 216 81.5
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 1.1e-93 347.4 204 83.8
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.4e-93 347.1 217 82.9
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.4e-93 347.1 214 81.8
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.4e-93 347.1 218 79.4
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.4e-93 347.1 217 80.2
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.9e-93 346.7 203 84.2
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 2.5e-93 346.3 214 81.3
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.5e-93 346.3 204 84.8
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 4.2e-93 345.5 214 80.8
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 4.2e-93 345.5 216 81.5
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 7.2e-93 344.7 214 80.4
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 9.4e-93 344.4 214 80.4
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 9.4e-93 344.4 217 80.2
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 1.2e-92 344.0 221 79.2
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 1.2e-92 344.0 205 83.4
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 1.6e-92 343.6 214 79.9
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.6e-92 343.6 208 82.7
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 2.1e-92 343.2 214 79.4
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 3.6e-92 342.4 215 77.7
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.6e-92 342.4 231 76.2
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 3.6e-92 342.4 206 84.0
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 4.7e-92 342.0 268 69.4
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 6.1e-92 341.7 216 80.6
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 7.9e-92 341.3 203 82.8
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 1.0e-91 340.9 216 77.8
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 1.0e-91 340.9 213 79.8
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.4e-91 340.5 216 77.3
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.8e-91 340.1 204 83.8
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.8e-91 340.1 214 79.9
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 2.3e-91 339.7 214 78.0
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.3e-91 339.7 214 79.0
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 3.9e-91 339.0 214 79.4
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 6.7e-91 338.2 216 77.8
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 6.7e-91 338.2 236 72.9
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 8.8e-91 337.8 203 82.3
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 2.0e-90 336.7 214 78.0
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 2.6e-90 336.3 215 80.5
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 2.6e-90 336.3 194 85.1
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 3.3e-90 335.9 214 77.6
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 5.7e-90 335.1 220 77.7
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 1.7e-89 333.6 214 77.6
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 2.2e-89 333.2 214 77.6
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 8.2e-89 331.3 204 81.4
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 8.2e-89 331.3 215 79.1
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.1e-88 330.9 193 85.0
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 1.1e-88 330.9 215 79.1
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.8e-88 330.1 214 78.5
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 6.9e-88 328.2 214 78.5
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 1.5e-87 327.0 214 73.8
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 3.4e-87 325.9 214 76.6
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 4.5e-87 325.5 199 83.9
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 3.8e-86 322.4 193 81.9
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.1e-85 320.9 192 81.8
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 4.7e-84 315.5 241 68.9
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 2.3e-83 313.2 214 73.8
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 6.7e-83 311.6 195 79.5
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 2.0e-82 310.1 190 80.0
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.2e-81 306.6 195 79.0
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.0e-79 300.1 219 69.4
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 5.9e-79 298.5 191 78.0
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.9e-77 293.5 219 68.0
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 5.2e-75 285.4 151 94.0
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 7.5e-74 281.6 214 70.1
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.7e-73 280.4 151 92.7
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 4.1e-72 275.8 200 67.5
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 6.5e-70 268.5 202 66.8
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 7.2e-69 265.0 156 83.3
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 3.6e-68 262.7 207 65.7
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.7e-65 253.8 208 65.9
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 1.7e-65 253.8 159 79.2
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 3.7e-65 252.7 148 83.8
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 2.0e-63 246.9 151 80.1
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 4.5e-63 245.7 196 63.3
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 4.2e-61 239.2 214 61.7
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 4.2e-61 239.2 181 69.1
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 4.2e-61 239.2 147 81.0
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 2.8e-60 236.5 164 75.6
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 7.0e-56 221.9 233 50.6
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 1.8e-51 207.2 202 53.5
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 3.4e-50 203.0 201 58.7
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 4.1e-48 196.1 131 72.5
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.2e-40 169.9 115 70.4
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 1.5e-37 161.0 108 76.9
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 1.7e-33 147.5 113 64.6
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.1e-28 130.6 89 71.9
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 2.8e-28 130.2 92 65.2
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.9e-25 119.4 101 62.4
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.1e-24 118.2 113 59.3
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 2.4e-24 117.1 135 50.4
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.1e-21 108.2 73 80.8
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 2.4e-19 100.5 68 77.9
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 9.0e-19 98.6 51 94.1
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 2.9e-17 93.6 63 68.3
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.1e-13 81.6 97 47.4
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 3.3e-13 80.1 114 42.1
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 1.2e-10 71.6 204 28.9
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 5.4e-08 62.8 63 57.1


User provided reference genes

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