Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 2.5e-76 288.9 167 100.0
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 5.2e-74 281.2 176 88.1
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 1.8e-66 256.1 164 86.6
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 2.6e-25 119.4 100 70.0
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 2.5e-23 112.8 141 50.4
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 5.5e-23 111.7 97 68.0
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 7.2e-23 111.3 97 68.0
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 2.1e-22 109.8 97 64.9
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 2.7e-22 109.4 95 65.3
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.7e-22 109.4 95 65.3
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 2.7e-22 109.4 95 65.3
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 3.6e-22 109.0 97 61.9
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 3.6e-22 109.0 97 62.9
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 4.7e-22 108.6 95 64.2
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 4.7e-22 108.6 95 64.2
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 4.7e-22 108.6 97 62.9
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 6.1e-22 108.2 95 64.2
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 1.0e-21 107.5 97 61.9
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 1.4e-21 107.1 95 63.2
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.4e-21 107.1 97 60.8
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.4e-21 107.1 95 65.3
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 1.4e-21 107.1 95 63.2
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 1.4e-21 107.1 95 63.2
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.8e-21 106.7 97 61.9
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 1.8e-21 106.7 97 60.8
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 2.3e-21 106.3 97 61.9
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 3.0e-21 105.9 97 60.8
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 3.0e-21 105.9 97 60.8
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 3.0e-21 105.9 106 57.5
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 3.0e-21 105.9 95 63.2
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 3.0e-21 105.9 97 60.8
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 3.9e-21 105.5 95 62.1
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 3.9e-21 105.5 95 60.0
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 6.7e-21 104.8 95 60.0
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 6.7e-21 104.8 97 59.8
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 1.1e-20 104.0 97 58.8
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 1.1e-20 104.0 97 58.8
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 1.1e-20 104.0 95 60.0
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.1e-20 104.0 95 60.0
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.1e-20 104.0 97 59.8
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 1.5e-20 103.6 95 61.1
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.5e-20 103.6 97 57.7
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 2.0e-20 103.2 95 60.0
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 2.0e-20 103.2 95 60.0
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 2.0e-20 103.2 95 61.1
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.0e-20 103.2 95 58.9
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 2.0e-20 103.2 95 60.0
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.0e-20 103.2 95 62.1
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 2.0e-20 103.2 95 60.0
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 2.6e-20 102.8 97 57.7
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 2.6e-20 102.8 95 60.0
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 2.6e-20 102.8 95 58.9
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 2.6e-20 102.8 95 61.1
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 2.6e-20 102.8 95 58.9
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 3.3e-20 102.4 95 60.0
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 5.7e-20 101.7 95 60.0
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 7.4e-20 101.3 95 60.0
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 7.4e-20 101.3 95 60.0
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.7e-19 100.1 95 60.0
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 3.7e-19 99.0 95 60.0
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 4.8e-19 98.6 134 52.2
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 4.8e-19 98.6 94 59.6
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 4.1e-18 95.5 93 58.1
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 7.0e-18 94.7 97 54.6
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.2e-17 94.0 95 54.7
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.2e-17 94.0 94 55.3
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 4.5e-17 92.0 94 54.3
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.0e-16 90.9 95 52.6
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 5.0e-16 88.6 87 52.9
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.5e-16 88.2 95 51.6
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 6.5e-16 88.2 76 59.2
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 1.5e-15 87.0 76 57.9
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 1.9e-15 86.7 74 60.8
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 4.2e-15 85.5 96 53.1
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 7.2e-15 84.7 74 60.8
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 7.2e-15 84.7 97 51.5
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.6e-14 83.6 74 59.5
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 1.6e-14 83.6 74 58.1
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.1e-14 83.2 74 59.5
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 6.7e-13 78.2 45 84.4
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 8.8e-13 77.8 45 84.4
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 8.8e-13 77.8 45 84.4
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 8.8e-13 77.8 45 84.4
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 8.8e-13 77.8 45 84.4
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 8.8e-13 77.8 90 52.2
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 1.2e-12 77.4 45 84.4
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 7.5e-12 74.7 45 80.0
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 7.5e-12 74.7 95 52.6
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 7.5e-12 74.7 95 52.6
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 9.7e-12 74.3 87 54.0
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 2.8e-11 72.8 45 75.6
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 4.8e-11 72.0 73 50.7
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 1.8e-10 70.1 83 51.8
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.8e-10 70.1 43 74.4
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 2.4e-10 69.7 45 71.1
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 2.4e-10 69.7 45 71.1
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 2.4e-10 69.7 45 71.1
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 2.4e-10 69.7 43 72.1
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 3.1e-10 69.3 43 72.1
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 3.1e-10 69.3 43 72.1
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 3.1e-10 69.3 45 71.1
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 3.1e-10 69.3 43 72.1
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 3.1e-10 69.3 43 72.1
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 3.1e-10 69.3 43 72.1
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 4.1e-10 68.9 43 74.4
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 5.3e-10 68.6 43 74.4
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 7.0e-10 68.2 43 72.1
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 7.0e-10 68.2 48 66.7
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 7.0e-10 68.2 48 66.7
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 9.1e-10 67.8 42 73.8
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 9.1e-10 67.8 43 69.8
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.0e-09 66.6 43 72.1
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.0e-09 66.6 43 72.1
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 2.0e-09 66.6 43 72.1
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 3.5e-09 65.9 61 59.0
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.5e-09 65.9 43 67.4
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.5e-09 65.5 84 42.9
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 7.7e-09 64.7 43 62.8
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.0e-08 64.3 43 65.1
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.7e-08 63.5 65 56.9
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 1.6e-06 57.0 66 48.5


User provided reference genes

Program Settings