Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 6.2e-174 614.0 302 100.0
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 2.6e-172 608.6 305 99.0
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 2.4e-165 585.5 302 95.0
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 8.4e-147 523.9 303 85.5
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 3.5e-145 518.5 303 86.1
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 6.7e-144 514.2 303 84.5
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 6.7e-144 514.2 306 84.6
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 8.7e-144 513.8 303 84.2
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 8.7e-144 513.8 303 84.2
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 1.8e-141 506.1 312 81.7
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 2.4e-141 505.8 313 81.8
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 7.6e-140 500.7 302 82.1
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 1.3e-139 500.0 298 83.2
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 2.2e-139 499.2 301 82.7
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.8e-139 498.4 301 82.7
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 4.2e-138 495.0 297 82.5
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 8.8e-112 407.5 274 73.7
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 3.4e-87 325.9 295 58.3
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 6.4e-78 295.0 288 52.4
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 8.3e-78 294.7 283 53.0
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.1e-77 294.3 299 51.8
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 5.4e-77 292.0 288 51.7
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 9.2e-77 291.2 270 53.0
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 7.8e-76 288.1 282 51.1
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 2.3e-75 286.6 288 51.7
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 2.9e-75 286.2 288 50.0
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.9e-75 286.2 288 51.7
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 5.0e-75 285.4 285 51.2
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.5e-74 283.9 288 50.3
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 4.3e-74 282.3 288 49.3
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 4.3e-74 282.3 288 51.0
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.1e-73 280.0 293 50.9
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 2.8e-73 279.6 287 49.1
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 3.6e-73 279.3 297 47.8
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.4e-72 277.3 294 52.0
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 2.3e-72 276.6 287 48.8
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 3.1e-72 276.2 288 49.0
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 4.0e-72 275.8 285 48.1
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 5.2e-72 275.4 278 49.3
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 8.9e-72 274.6 282 50.7
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 8.9e-72 274.6 268 50.7
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 1.5e-71 273.9 242 54.5
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 1.5e-71 273.9 263 51.0
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.5e-71 273.9 288 50.3
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 2.6e-71 273.1 287 48.8
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 2.6e-71 273.1 290 49.0
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 3.4e-71 272.7 290 49.0
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 1.3e-70 270.8 266 50.8
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.7e-70 270.4 274 50.7
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.9e-70 269.6 288 47.9
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 6.4e-70 268.5 277 51.3
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.4e-69 267.3 281 49.5
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 2.4e-69 266.5 286 48.3
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 3.2e-69 266.2 282 48.9
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 7.0e-69 265.0 276 49.6
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 9.2e-69 264.6 286 47.2
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 1.6e-68 263.8 263 50.6
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.6e-68 263.8 257 49.4
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 2.7e-68 263.1 291 47.8
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 3.5e-68 262.7 282 46.1
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 6.0e-68 261.9 285 46.0
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 6.0e-68 261.9 285 47.0
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 7.8e-68 261.5 251 52.6
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 7.8e-68 261.5 267 48.3
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 7.8e-68 261.5 288 47.2
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 1.0e-67 261.2 276 48.9
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 1.0e-67 261.2 286 46.9
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.0e-67 261.2 287 46.7
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 1.0e-67 261.2 264 49.2
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.3e-67 260.8 251 49.8
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 2.3e-67 260.0 285 47.7
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 2.3e-67 260.0 287 47.0
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 3.0e-67 259.6 278 48.6
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 5.0e-67 258.8 273 46.5
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 5.0e-67 258.8 267 49.1
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 6.6e-67 258.5 243 55.6
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 6.6e-67 258.5 209 59.8
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 8.6e-67 258.1 275 47.6
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 1.5e-66 257.3 273 46.2
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 2.5e-66 256.5 273 49.1
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 5.6e-66 255.4 280 47.9
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 7.3e-66 255.0 288 46.2
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 1.2e-65 254.2 275 47.3
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 1.2e-65 254.2 275 47.3
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 2.1e-65 253.4 275 46.9
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 2.1e-65 253.4 273 46.5
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 2.1e-65 253.4 256 50.4
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 3.6e-65 252.7 282 48.2
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 4.7e-65 252.3 275 47.3
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.1e-64 251.1 276 47.5
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.4e-64 250.8 288 46.2
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.4e-64 250.8 256 52.7
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 2.3e-64 250.0 253 51.0
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 2.3e-64 250.0 285 44.2
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 3.1e-64 249.6 230 53.9
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 8.9e-64 248.1 287 45.3
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 1.5e-63 247.3 287 46.3
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 2.6e-63 246.5 293 45.1
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 3.4e-63 246.1 248 50.0
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 5.8e-63 245.4 277 47.7
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 5.8e-63 245.4 250 49.2
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 2.2e-62 243.4 279 47.7
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 8.3e-62 241.5 276 47.1
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 1.1e-61 241.1 273 46.2
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 2.4e-61 240.0 271 45.0
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.7e-60 236.5 251 49.8
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 7.8e-60 235.0 314 42.0
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 7.8e-60 235.0 275 45.8
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 2.5e-58 229.9 270 44.4
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 9.5e-58 228.0 276 50.4
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 2.8e-57 226.5 285 42.5
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 2.3e-56 223.4 230 52.2
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 1.4e-53 214.2 268 48.9
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 1.2e-52 211.1 292 40.8
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 1.0e-51 208.0 253 42.3
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 1.7e-51 207.2 218 53.7
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 3.0e-51 206.5 208 58.7
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 3.0e-51 206.5 260 39.6
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 4.3e-50 202.6 216 46.8
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 5.6e-50 202.2 294 45.9
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 7.3e-50 201.8 218 53.7
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 2.1e-49 200.3 215 51.2
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 8.1e-49 198.4 236 50.0
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 3.1e-48 196.4 180 57.2
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 3.4e-47 193.0 196 48.0
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 1.9e-45 187.2 217 49.3
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 1.9e-45 187.2 219 48.9
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 9.3e-45 184.9 217 48.8
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 2.1e-44 183.7 264 35.6
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 1.7e-43 180.6 151 50.3
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 1.8e-40 170.6 148 59.5
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 7.6e-39 165.2 148 58.8
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 6.4e-38 162.2 147 57.8
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 1.4e-37 161.0 246 37.0
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 2.4e-37 160.2 218 47.2
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 2.4e-37 160.2 218 47.2
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 5.4e-37 159.1 141 56.0
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 2.1e-36 157.1 222 40.5
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 6.0e-36 155.6 286 37.4
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 3.0e-27 126.7 72 79.2
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 3.0e-27 126.7 72 79.2
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 6.9e-24 115.5 160 46.2
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 1.6e-20 104.4 184 35.9
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 7.4e-18 95.5 180 31.7
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 6.9e-16 89.0 79 46.8
A01p31840 Brassica napus HOM05D004840 ORTHO05D005751 1.0e-14 85.1 124 44.4
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 6.5e-14 82.4 79 49.4


User provided reference genes

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