Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 1.1e-204 716.5 384 100.0
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 5.8e-169 597.8 366 90.7
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 3.8e-168 595.1 338 95.6
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 1.0e-160 570.5 376 82.4
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 1.0e-160 570.5 376 82.4
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 2.9e-160 568.9 375 82.4
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 1.9e-159 566.2 375 82.1
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 2.7e-158 562.4 376 81.9
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 1.9e-148 529.6 373 81.5
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 2.2e-147 526.2 370 78.1
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 1.4e-146 523.5 365 78.6
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 5.1e-141 505.0 366 74.6
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 5.1e-133 478.4 365 71.8
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.1e-132 477.2 365 71.2
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.0e-112 411.0 383 60.8
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 9.5e-111 404.4 380 60.8
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 1.2e-110 404.1 397 63.2
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 3.0e-109 399.4 379 59.1
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 5.2e-109 398.7 381 60.6
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 1.5e-108 397.1 379 59.6
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 2.0e-108 396.7 370 60.8
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 4.4e-108 395.6 384 59.1
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 5.7e-108 395.2 375 60.3
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 5.7e-108 395.2 383 59.8
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 1.3e-107 394.0 382 59.7
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.2e-107 393.3 375 59.7
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 4.9e-107 392.1 386 58.8
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 8.3e-107 391.3 372 60.2
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 1.1e-106 391.0 374 58.8
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 1.8e-106 390.2 380 58.4
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 3.1e-106 389.4 375 58.4
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 9.2e-106 387.9 377 59.2
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 1.2e-105 387.5 376 57.7
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 1.2e-105 387.5 375 58.4
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 2.7e-105 386.3 388 58.5
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 2.7e-105 386.3 376 59.3
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 3.5e-105 386.0 386 58.5
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.0e-104 384.4 366 60.7
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 1.0e-104 384.4 372 59.9
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 2.3e-104 383.3 390 57.4
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 2.9e-104 382.9 382 57.6
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 2.9e-104 382.9 359 60.2
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 2.9e-104 382.9 359 60.2
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 3.8e-104 382.5 377 57.0
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 3.8e-104 382.5 367 58.9
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 3.8e-104 382.5 377 57.8
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 5.0e-104 382.1 377 59.2
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 6.6e-104 381.7 383 58.2
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 6.6e-104 381.7 366 60.1
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.6e-104 381.7 366 60.1
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.5e-103 380.6 385 56.1
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 1.5e-103 380.6 366 59.0
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 1.5e-103 380.6 372 57.5
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 2.5e-103 379.8 364 60.2
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 4.3e-103 379.0 377 58.4
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 5.6e-103 378.6 375 59.7
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 5.6e-103 378.6 376 56.6
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 5.6e-103 378.6 373 57.4
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 5.6e-103 378.6 386 58.5
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 7.3e-103 378.3 378 57.9
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 7.3e-103 378.3 387 61.2
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 9.5e-103 377.9 387 57.6
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 1.6e-102 377.1 385 58.4
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.1e-102 376.7 376 57.4
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 2.8e-102 376.3 378 57.9
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 1.0e-101 374.4 372 57.8
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 2.3e-101 373.2 399 55.4
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 2.3e-101 373.2 386 56.7
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 3.0e-101 372.9 381 56.7
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 8.9e-101 371.3 379 57.3
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 2.0e-100 370.2 363 58.7
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 2.6e-100 369.8 381 57.0
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 2.6e-100 369.8 408 53.4
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 2.6e-100 369.8 395 57.2
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 5.7e-100 368.6 390 56.9
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 1.7e-99 367.1 386 56.0
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 2.2e-99 366.7 371 56.6
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 3.7e-99 365.9 362 59.7
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.4e-98 363.2 377 56.8
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.4e-98 363.2 377 56.8
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 4.1e-98 362.5 388 53.1
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 7.0e-98 361.7 377 60.7
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 9.2e-98 361.3 373 56.6
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 1.6e-97 360.5 364 56.3
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.7e-97 359.8 368 56.8
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.7e-97 359.8 368 56.8
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 4.6e-97 359.0 419 52.5
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 4.6e-97 359.0 365 57.3
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 6.6e-96 355.1 376 54.3
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 2.5e-95 353.2 456 49.6
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 3.3e-95 352.8 380 52.4
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 7.3e-95 351.7 270 70.4
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 8.0e-94 348.2 369 53.7
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 1.8e-93 347.1 380 51.8
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 4.4e-92 342.4 356 56.2
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 7.5e-92 341.7 372 55.9
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 9.8e-92 341.3 374 55.1
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 1.7e-91 340.5 495 46.3
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 8.3e-91 338.2 366 52.7
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 1.9e-90 337.0 358 54.2
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 1.9e-90 337.0 361 50.7
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 4.1e-90 335.9 364 54.4
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 6.0e-89 332.0 361 50.7
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 3.9e-88 329.3 388 50.5
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 5.0e-88 328.9 383 48.8
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 8.6e-88 328.2 377 50.9
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.5e-87 327.4 374 50.3
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 5.6e-87 325.5 382 48.4
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 7.3e-87 325.1 377 51.7
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.1e-86 323.6 361 50.1
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.8e-86 323.2 361 52.6
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 8.1e-86 321.6 330 57.3
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 5.8e-84 315.5 458 45.0
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 7.5e-84 315.1 351 51.6
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 9.8e-84 314.7 345 53.6
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 3.2e-82 309.7 396 50.5
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 5.4e-82 308.9 396 49.5
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.1e-78 297.0 373 47.2
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 2.1e-78 297.0 375 50.4
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.2e-78 295.4 364 49.2
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.8e-75 286.2 354 50.0
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 8.4e-75 285.0 368 48.6
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.1e-74 284.6 377 48.5
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.6e-73 280.8 325 49.5
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 4.6e-73 279.3 367 46.3
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 5.6e-71 272.3 307 54.4
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 2.0e-68 263.8 191 74.9
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 3.5e-65 253.1 311 50.5
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 4.3e-63 246.1 283 54.4
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.1e-61 240.0 368 42.1
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 5.3e-61 239.2 356 42.7
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.0e-60 237.3 334 46.1
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 2.1e-57 227.3 291 47.8
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 2.3e-56 223.8 542 33.8
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 5.5e-50 202.6 291 43.6
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 1.5e-44 184.5 293 44.0
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 3.9e-40 169.9 121 74.4
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 6.9e-37 159.1 237 41.8
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 2.1e-33 147.5 74 95.9
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 2.6e-28 130.6 109 66.1
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 2.9e-27 127.1 88 77.3
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 9.4e-26 122.1 122 54.1
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 2.7e-25 120.6 170 48.8
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 1.1e-23 115.2 169 48.5
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 1.3e-22 111.7 181 43.6
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 2.4e-21 107.5 71 73.2
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 1.7e-19 101.3 109 51.4
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 3.2e-18 97.1 61 72.1
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 7.2e-18 95.9 64 71.9
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.7e-17 94.0 50 92.0
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.4e-16 91.7 56 75.0
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 3.0e-16 90.5 82 58.5
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 5.7e-15 86.3 53 77.4
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 2.8e-14 84.0 52 78.8
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 1.1e-13 82.0 56 64.3
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 2.0e-12 77.8 100 50.0
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 3.6e-09 67.0 144 37.5
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 3.0e-08 63.9 43 76.7
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.0e-08 63.5 35 82.9
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 2.0e-07 61.2 32 87.5
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 9.7e-07 58.9 32 84.4
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 9.7e-07 58.9 37 73.0
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 3.7e-06 57.0 35 77.1
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 8.2e-06 55.8 32 81.2


User provided reference genes

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