Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 2.7e-194 681.8 340 100.0
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 2.8e-183 645.2 340 95.6
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 3.1e-182 641.7 340 95.0
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 9.4e-179 630.2 340 92.9
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 1.1e-176 623.2 340 92.4
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 5.0e-172 607.8 340 89.7
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 2.5e-163 578.9 340 86.2
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 3.2e-155 552.0 350 82.3
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 8.3e-151 537.3 328 82.9
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 5.4e-150 534.6 328 82.9
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 6.6e-148 527.7 328 81.7
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 4.9e-143 511.5 328 80.2
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 1.6e-130 469.9 335 74.0
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 2.7e-109 399.4 333 64.3
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 1.2e-101 374.0 334 60.2
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 3.9e-100 369.0 362 55.8
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 2.5e-99 366.3 329 58.1
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 1.1e-97 360.9 333 56.8
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 1.4e-97 360.5 334 57.5
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.3e-95 354.0 334 57.8
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 6.4e-95 351.7 256 67.6
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.4e-95 351.7 333 55.0
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 6.4e-95 351.7 332 59.0
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.1e-94 350.9 334 57.8
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 1.1e-94 350.9 334 58.1
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 7.1e-94 348.2 292 59.9
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 7.1e-94 348.2 332 55.7
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 2.3e-92 343.2 329 56.2
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.1e-91 340.9 337 55.2
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 1.5e-91 340.5 324 56.5
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 3.3e-91 339.3 338 54.7
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 4.3e-91 339.0 328 54.6
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 5.6e-91 338.6 293 58.4
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 9.6e-91 337.8 380 50.5
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 1.6e-90 337.0 328 54.3
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 3.7e-90 335.9 289 59.2
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 8.1e-90 334.7 333 54.1
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.1e-89 334.3 245 66.5
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 1.4e-89 334.0 334 54.8
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.4e-89 333.2 292 57.9
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 3.1e-89 332.8 332 53.0
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 5.3e-89 332.0 329 55.9
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 6.9e-89 331.6 330 54.2
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 9.0e-89 331.3 332 53.3
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 1.2e-88 330.9 329 55.9
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.4e-88 329.3 292 58.6
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.5e-88 328.9 333 51.7
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 1.7e-87 327.0 270 61.5
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 6.5e-87 325.1 329 52.6
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 8.4e-87 324.7 290 56.9
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 3.2e-86 322.8 246 63.8
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 3.2e-86 322.8 307 56.4
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 4.2e-86 322.4 338 53.3
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 9.3e-86 321.2 257 61.1
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 9.3e-86 321.2 235 67.2
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 2.1e-85 320.1 252 64.3
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 6.0e-85 318.5 341 51.6
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 7.9e-85 318.2 297 56.2
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 7.9e-85 318.2 248 62.5
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 3.0e-84 316.2 268 61.2
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 6.7e-84 315.1 231 65.4
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 4.3e-83 312.4 287 56.1
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 4.3e-83 312.4 327 50.8
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 7.4e-83 311.6 295 55.3
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 9.6e-83 311.2 315 54.6
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 2.1e-82 310.1 357 49.0
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 1.5e-80 303.9 247 61.1
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 2.0e-80 303.5 336 51.2
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 2.6e-80 303.1 225 65.8
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 2.9e-79 299.7 216 66.7
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 1.4e-78 297.4 321 51.1
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 3.2e-78 296.2 209 68.9
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 3.5e-77 292.7 328 51.5
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 1.8e-76 290.4 298 49.3
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 6.7e-76 288.5 258 54.3
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 1.9e-75 287.0 269 61.7
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 4.3e-75 285.8 189 74.1
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 4.3e-75 285.8 303 51.5
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 1.1e-73 281.2 312 53.5
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 1.8e-73 280.4 301 53.5
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 3.1e-73 279.6 290 52.4
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 1.3e-71 274.2 214 61.2
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 2.2e-71 273.5 284 52.8
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 1.1e-70 271.2 309 50.5
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 1.6e-69 267.3 305 49.5
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 2.5e-67 260.0 217 61.3
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 2.0e-64 250.4 337 46.3
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 3.6e-61 239.6 194 61.9
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 1.7e-58 230.7 318 44.3
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 4.1e-57 226.1 442 36.0
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 1.2e-56 224.6 167 64.1
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 1.2e-56 224.6 246 48.8
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 1.5e-54 217.6 167 63.5
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 2.8e-50 203.4 264 43.9
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 7.0e-49 198.7 234 45.3
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 2.5e-46 190.3 304 37.2
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 2.3e-44 183.7 182 54.4
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 6.8e-44 182.2 171 55.6
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 2.6e-43 180.3 214 44.4
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.2e-40 171.4 365 35.3
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 3.5e-40 169.9 174 53.4
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 7.7e-40 168.7 261 42.5
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 3.8e-39 166.4 251 41.8
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 6.5e-39 165.6 289 36.7
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 1.9e-38 164.1 129 63.6
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 8.8e-36 155.2 165 49.7
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 1.8e-33 147.5 111 71.2
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 2.5e-30 137.1 82 84.1
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 2.5e-30 137.1 111 66.7
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 2.5e-30 137.1 82 84.1
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 1.0e-28 131.7 83 80.7
C03p78440 Brassica napus HOM05D012085 ORTHO05D006095 1.4e-28 131.3 82 79.3
C09p29080 Brassica napus HOM05D004613 ORTHO05D006095 1.4e-28 131.3 111 64.9
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 8.9e-28 128.6 268 35.8
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 4.4e-27 126.3 71 77.5
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 2.4e-25 120.6 68 82.4
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 3.0e-23 113.6 107 57.9
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 3.9e-23 113.2 95 63.2
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 2.5e-22 110.5 96 63.5
BcaC09g50421 Brassica carinata HOM05D004613 ORTHO05D006095 2.8e-21 107.1 123 53.7
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 2.8e-21 107.1 58 87.9
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 6.2e-21 105.9 219 30.6
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 8.0e-21 105.5 69 75.4
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 8.0e-21 105.5 69 75.4
BcaC07g37284 Brassica carinata HOM05D004613 ORTHO05D006095 1.8e-20 104.4 96 60.4
BolC8t47558H Brassica oleracea HOM05D004613 ORTHO05D006095 1.8e-20 104.4 96 60.4
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 5.2e-20 102.8 55 89.1
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 3.4e-19 100.1 62 79.0
C03p71850 Brassica napus HOM05D004613 ORTHO05D006095 7.0e-17 92.4 56 78.6
C04p31600 Brassica napus HOM05D004613 ORTHO05D006095 1.2e-16 91.7 59 76.3
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 1.6e-16 91.3 49 87.8
C09p20670 Brassica napus HOM05D004613 ORTHO05D006095 3.0e-15 87.0 56 78.6
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 6.6e-15 85.9 128 43.8
C02p33910 Brassica napus HOM05D004613 ORTHO05D006095 1.1e-14 85.1 51 82.4
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 1.9e-14 84.3 46 93.5
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 2.8e-13 80.5 42 83.3
BraA06t25731Z Brassica rapa HOM05D030286 ORTHO05D014940 3.1e-12 77.0 39 89.7
BcaC02g11915 Brassica carinata HOM05D004613 ORTHO05D014940 4.0e-12 76.6 40 85.0
BcaB02g10346 Brassica carinata HOM05D004613 ORTHO05D014940 2.0e-11 74.3 41 80.5
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 2.6e-11 73.9 41 78.0
C07p10570 Brassica napus HOM05D004613 ORTHO05D014940 4.4e-11 73.2 69 56.5
BcaB01g02574 Brassica carinata HOM05D001081 ORTHO05D004708 5.8e-11 72.8 49 73.5
C08p07130 Brassica napus HOM05D004613 ORTHO05D014940 5.8e-11 72.8 42 81.0
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 7.5e-11 72.4 97 42.3
BcaC03g15600 Brassica carinata HOM05D008340 ORTHO05D014940 9.8e-11 72.0 39 82.1
BolC9t56574H Brassica oleracea HOM05D004613 ORTHO05D014940 9.8e-11 72.0 42 78.6
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.7e-10 71.2 49 65.3
BcaC04g20970 Brassica carinata HOM05D004613 ORTHO05D014940 3.7e-10 70.1 39 82.1
BcaB01g02118 Brassica carinata HOM05D004613 ORTHO05D014940 2.1e-08 64.3 39 74.4
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.5e-08 63.5 49 61.2
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.5e-08 63.5 49 61.2
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.5e-08 63.5 49 61.2
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.5e-08 63.5 49 61.2
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.5e-08 63.5 49 61.2
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.5e-08 63.5 49 61.2
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 3.5e-08 63.5 49 61.2
BcaC02g11089 Brassica carinata HOM05D000249 ORTHO05D032228 7.8e-08 62.4 37 73.0
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 5.1e-07 59.7 182 30.8
A09p36030 Brassica napus HOM05D030286 ORTHO05D014940 9.5e-06 55.5 66 54.5


User provided reference genes

Program Settings