Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 2357.0 1206 100.0
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 2353.6 1206 99.8
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 2321.2 1206 98.3
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 2314.3 1206 98.1
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 2179.8 1202 92.3
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 2178.3 1206 92.7
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 2128.6 1204 89.5
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 2116.3 1208 88.8
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 2081.2 1209 88.0
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1977.2 1206 87.1
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1977.2 1208 82.9
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1904.8 1186 80.9
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1875.5 1177 80.9
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1867.0 1190 79.6
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1845.5 1185 78.8
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1728.0 1203 72.0
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1713.7 1205 72.1
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1709.5 1137 76.6
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1701.8 1209 71.7
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1698.7 1210 71.7
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1676.8 1205 70.6
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1672.1 1209 69.6
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1660.2 1212 69.8
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1657.9 1204 69.4
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1653.6 1209 69.1
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1651.3 1211 69.2
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1644.8 1206 69.1
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1637.9 1215 69.2
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1637.1 1211 69.3
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1636.3 1209 69.6
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1635.5 1205 69.5
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1634.0 1205 69.1
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1629.4 1211 68.5
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1623.6 1206 68.3
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1620.1 1214 68.0
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1616.7 1182 69.0
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1615.5 1205 68.2
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1611.3 1204 68.6
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1607.8 1204 68.3
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1605.5 1209 66.7
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1603.6 1206 67.8
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1601.6 1205 67.3
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1600.9 1207 67.7
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1599.3 1205 67.2
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1596.3 1205 67.1
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1595.1 1205 68.5
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1592.4 1205 67.1
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1588.9 1211 66.8
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1587.8 1205 66.9
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1587.4 1203 66.3
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1579.3 1171 68.5
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1578.9 1215 66.2
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1563.9 1205 66.6
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1561.6 1205 66.6
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1560.0 1203 65.5
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1558.9 1204 66.1
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1556.6 1202 66.3
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1553.5 1208 65.5
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1552.3 1178 67.7
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1544.6 1205 63.8
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1543.1 1205 66.1
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1542.3 1223 64.6
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1540.4 1200 66.0
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1540.0 1202 64.8
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1537.3 1204 66.1
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1530.4 1182 65.5
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1523.8 1207 64.1
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1521.9 1214 64.7
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1516.5 1206 63.9
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1510.4 1206 64.2
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1508.8 1205 63.5
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1508.0 1208 63.5
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1507.3 1215 63.4
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1506.1 1200 64.3
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1501.1 1207 63.7
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1500.0 1207 63.0
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1486.9 1203 62.8
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1486.1 1205 62.8
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1485.7 1168 64.1
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1483.4 1202 62.6
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1482.6 1207 64.5
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1480.3 1205 62.6
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1476.8 1206 61.9
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1476.8 1202 63.1
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1476.1 1184 63.0
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1471.8 1218 62.2
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1465.7 1205 61.9
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1442.6 1203 63.1
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1439.1 1117 65.4
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1393.6 1263 58.1
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1392.5 1204 60.2
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1387.5 1138 61.2
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1370.1 885 78.0
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1359.7 1204 59.2
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1348.6 1204 57.6
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1335.9 1208 56.5
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1313.1 1292 55.9
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1312.7 1183 57.1
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1310.0 986 68.1
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1303.1 1021 65.2
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1260.0 1216 54.6
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1170.6 1056 59.0
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1119.8 965 61.9
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1078.9 819 67.4
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 4.2e-298 1028.5 837 64.5
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 1.7e-291 1006.5 1055 54.5
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 1.2e-281 973.8 1187 48.2
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 8.2e-278 961.1 1151 48.1
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 3.2e-274 949.1 1155 48.1
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.6e-268 930.2 1155 47.3
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-266 923.7 1172 47.6
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.5e-266 922.9 1230 42.5
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 4.4e-263 912.1 1240 43.5
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 9.1e-261 904.4 1240 41.4
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 7.5e-239 831.6 652 65.2
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 2.3e-235 820.1 1219 39.1
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.6e-217 760.8 798 52.4
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 9.3e-205 718.4 1215 36.0
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.8e-191 672.5 569 60.8
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.0e-190 671.8 552 62.7
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.1e-181 641.7 634 53.3
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.5e-175 621.3 538 59.3
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 4.8e-161 573.2 416 68.8
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 1.6e-156 558.1 479 62.8
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.6e-138 497.7 487 53.0
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 1.2e-111 409.1 321 64.2
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 6.2e-100 370.2 297 64.0
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 4.9e-73 280.8 267 52.8
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 3.0e-70 271.6 210 64.8
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.8e-67 262.3 210 65.7
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 2.9e-65 255.0 187 69.5
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 6.1e-55 220.7 213 58.2
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 8.2e-52 210.3 471 31.6
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 9.1e-51 206.8 479 30.1
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 6.3e-44 184.1 409 30.8
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.5e-40 172.9 1235 21.9
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 6.8e-38 164.1 109 76.1
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 2.8e-28 132.1 94 74.5
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.3e-25 123.2 96 66.7
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 4.2e-24 118.2 79 82.3
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 1.1e-19 103.6 63 85.7
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 5.6e-16 91.3 83 61.4
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.2e-15 90.1 216 31.0
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 2.1e-15 89.4 78 59.0
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 6.8e-14 84.3 75 60.0
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 8.9e-14 84.0 73 58.9
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 2.0e-13 82.8 75 58.7
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 2.9e-12 79.0 76 52.6
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 8.3e-12 77.4 72 52.8
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 4.1e-11 75.1 49 77.6
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 4.1e-11 75.1 49 77.6
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.1e-11 75.1 67 61.2
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.3e-09 69.3 191 28.8
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 4.3e-08 65.1 88 44.3
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 5.2e-06 58.2 48 56.2
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 6.8e-06 57.8 220 23.6


User provided reference genes

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