Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 9.7e-253 876.3 440 100.0
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 2.4e-251 871.7 440 99.1
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 2.4e-251 871.7 440 99.1
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 1.6e-250 869.0 440 98.6
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 2.9e-249 864.8 440 98.2
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 9.2e-227 790.0 440 90.7
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 3.6e-223 778.1 440 88.4
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 7.0e-219 763.8 440 87.5
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 2.1e-207 725.7 442 84.6
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 7.5e-205 717.2 442 82.8
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.2e-199 699.9 442 82.6
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.0e-193 680.2 443 77.4
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 1.3e-188 663.3 401 82.8
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.3e-172 610.1 441 69.4
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 1.4e-166 590.1 443 67.9
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 1.8e-166 589.7 447 68.0
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 2.4e-166 589.3 450 65.6
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 3.1e-166 589.0 451 67.0
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 9.0e-166 587.4 455 64.8
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 2.6e-165 585.9 445 66.3
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 5.8e-165 584.7 451 66.3
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 4.2e-163 578.6 450 66.0
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 2.7e-162 575.9 443 67.3
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 6.0e-162 574.7 448 66.3
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 1.1e-160 570.5 451 65.2
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 1.1e-160 570.5 451 65.2
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.2e-157 560.5 444 65.8
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 2.9e-140 502.7 450 59.8
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 1.9e-139 500.0 452 60.4
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 3.2e-139 499.2 450 60.7
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 3.6e-138 495.7 458 60.3
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 8.0e-138 494.6 450 60.2
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 5.2e-137 491.9 450 57.8
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 1.5e-136 490.3 445 59.6
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 1.5e-136 490.3 465 57.0
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 9.7e-136 487.6 449 57.5
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 9.7e-136 487.6 458 58.5
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 1.1e-134 484.2 449 57.9
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 1.4e-134 483.8 450 57.3
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 3.1e-134 482.6 408 60.5
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 4.1e-134 482.3 451 58.3
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 4.1e-134 482.3 453 58.3
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 9.1e-134 481.1 449 58.6
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.5e-133 479.2 452 58.4
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.2e-132 476.5 453 57.6
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 2.9e-132 476.1 452 58.8
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 1.9e-131 473.4 421 58.9
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 9.4e-131 471.1 417 60.0
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 1.2e-130 470.7 409 60.9
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 2.1e-130 469.9 458 56.1
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 2.1e-130 469.9 460 56.1
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 1.0e-129 467.6 452 56.6
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 3.0e-129 466.1 441 56.9
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 5.2e-129 465.3 411 59.4
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 6.8e-129 464.9 453 56.5
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 1.2e-128 464.2 443 57.3
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 1.5e-128 463.8 458 57.0
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 2.0e-128 463.4 421 59.6
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.4e-128 462.6 390 62.8
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 4.4e-128 462.2 458 57.0
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 5.7e-128 461.8 451 58.1
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 1.7e-127 460.3 452 56.9
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 1.4e-126 457.2 392 60.5
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 3.5e-125 452.6 408 56.1
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 3.8e-124 449.1 435 56.3
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 1.8e-121 440.3 433 56.1
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 6.8e-121 438.3 455 53.8
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 5.7e-120 435.3 431 53.8
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 1.7e-119 433.7 392 56.1
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 3.7e-119 432.6 452 52.4
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 3.7e-119 432.6 459 52.7
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.4e-118 430.6 459 52.5
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 2.4e-118 429.9 446 54.3
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 3.1e-118 429.5 386 58.0
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 1.6e-117 427.2 448 53.3
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 5.0e-116 422.2 393 54.5
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 1.9e-115 420.2 453 51.2
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 3.3e-115 419.5 391 55.2
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.2e-114 417.5 453 51.0
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 5.2e-113 412.1 464 49.8
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.0e-112 410.2 451 53.0
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 2.6e-112 409.8 391 54.5
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 3.4e-112 409.5 453 49.2
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 5.7e-112 408.7 451 53.0
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 7.5e-112 408.3 462 49.1
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 1.7e-111 407.1 451 50.6
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 6.3e-111 405.2 406 53.7
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 2.4e-110 403.3 458 48.3
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 3.2e-110 402.9 398 55.5
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 2.3e-105 386.7 459 49.0
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 4.0e-105 386.0 457 47.3
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 6.8e-105 385.2 464 48.9
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 4.9e-103 379.0 394 52.3
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 4.1e-102 375.9 416 49.8
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 4.6e-101 372.5 343 57.1
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 6.0e-101 372.1 379 52.5
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 2.3e-100 370.2 329 59.3
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 1.5e-99 367.5 438 47.3
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 1.6e-93 347.4 452 46.7
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 5.6e-91 339.0 326 58.0
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 9.5e-91 338.2 374 49.5
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 2.8e-90 336.7 348 53.2
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.1e-89 334.7 349 52.7
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 4.0e-89 332.8 431 47.8
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 2.9e-87 326.6 420 46.2
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 1.9e-86 323.9 361 50.4
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 1.6e-77 294.3 427 42.4
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 3.6e-74 283.1 337 50.1
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 2.4e-73 280.4 404 40.8
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 2.0e-72 277.3 367 48.0
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 1.9e-70 270.8 393 42.2
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 1.0e-68 265.0 253 56.9
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 1.5e-64 251.1 301 51.2
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 2.0e-64 250.8 470 42.3
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 1.3e-63 248.1 226 58.8
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 1.6e-61 241.1 229 57.2
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 4.3e-59 233.0 258 48.1
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 1.4e-57 228.0 389 38.6
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 4.9e-55 219.5 387 36.4
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 7.1e-54 215.7 395 37.0
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 4.1e-49 199.9 420 36.7
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.1e-22 112.1 208 34.1
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 2.7e-21 107.5 164 42.1
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 4.0e-20 103.6 399 27.1
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 5.7e-19 99.8 366 31.1
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 2.2e-18 97.8 214 30.8
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 5.9e-16 89.7 80 53.8
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 9.4e-14 82.4 194 30.9
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 1.2e-11 75.5 110 44.5
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 2.4e-09 67.8 83 43.4
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 1.2e-08 65.5 443 23.9


User provided reference genes

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