Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p40150 Brassica napus HOM05D003219 ORTHO05D018367 5.9e-118 427.6 216 100.0
BcaNung02109 Brassica carinata HOM05D003219 ORTHO05D018367 4.5e-110 401.4 255 83.1
BolC7t44552H Brassica oleracea HOM05D003219 ORTHO05D018367 1.8e-103 379.4 216 92.1
Sp2g20070 Schrenkiella parvula HOM05D003219 ORTHO05D005190 1.7e-93 346.3 266 72.2
A02p38300 Brassica napus HOM05D003219 ORTHO05D005190 5.0e-93 344.7 265 72.1
BraA02t08811Z Brassica rapa HOM05D003219 ORTHO05D005190 5.0e-93 344.7 265 72.1
BcaC03g17751 Brassica carinata HOM05D003219 ORTHO05D005190 6.5e-93 344.4 265 72.1
C02p57630 Brassica napus HOM05D003219 ORTHO05D005190 6.5e-93 344.4 265 72.1
BolC2t11836H Brassica oleracea HOM05D003219 ORTHO05D005190 6.5e-93 344.4 265 72.1
Thhalv10003625m.g Eutrema salsugineum HOM05D003219 ORTHO05D005190 9.4e-92 340.5 266 71.1
CARHR185310 Cardamine hirsuta HOM05D003219 ORTHO05D005190 6.1e-91 337.8 262 69.1
BcaB07g34174 Brassica carinata HOM05D003219 ORTHO05D005190 8.0e-91 337.4 265 70.9
AT5G28740 Arabidopsis thaliana HOM05D003219 ORTHO05D005190 6.8e-90 334.3 265 68.7
Carub.0006s2599 Capsella rubella HOM05D003219 ORTHO05D005190 9.8e-89 330.5 265 68.7
Aa31LG11G8590 Aethionema arabicum HOM05D003219 ORTHO05D005190 1.6e-86 323.2 263 67.7
THA.LOC104799261 Tarenaya hassleriana HOM05D003219 ORTHO05D005190 1.2e-81 307.0 263 63.9
TWI63G1169 Tripterygium wilfordii HOM05D003219 ORTHO05D005190 1.9e-76 289.7 264 59.8
VMungo0540G2265 Vigna mungo HOM05D003219 ORTHO05D005190 1.6e-75 286.6 258 61.6
TPR.G36818 Trifolium pratense HOM05D003219 ORTHO05D005190 3.6e-75 285.4 240 64.2
Lalb_Chr11g0066351 Lupinus albus HOM05D003219 ORTHO05D005190 4.7e-75 285.0 258 59.7
Potri.004G035600 Populus trichocarpa HOM05D003219 ORTHO05D005190 4.7e-75 285.0 260 60.4
arahy.Tifrunner.gnm1.ann1.U3KJRG Arachis hypogaea HOM05D003219 ORTHO05D005190 6.1e-75 284.6 258 60.1
Glyma.13G245700 Glycine max HOM05D003219 ORTHO05D005190 1.0e-74 283.9 257 59.5
Lalb_Chr23g0271291 Lupinus albus HOM05D003219 ORTHO05D005190 2.3e-74 282.7 258 58.9
Psat1g208040 Pisum sativum HOM05D003219 ORTHO05D005190 2.3e-74 282.7 258 58.9
Medtr2g012310 Medicago truncatula HOM05D003219 ORTHO05D005190 4.0e-74 282.0 258 59.7
Sabra04G0021400 Salix brachista HOM05D003219 ORTHO05D005190 4.0e-74 282.0 262 59.5
TPR.G16428 Trifolium pratense HOM05D003219 ORTHO05D005190 6.8e-74 281.2 258 58.5
Nitab4.5_0000634g0070 Nicotiana tabacum HOM05D003219 ORTHO05D005190 8.9e-74 280.8 263 58.9
PGSC0003DMG400006877 Solanum tuberosum HOM05D003219 ORTHO05D005190 8.9e-74 280.8 263 58.9
CAN.G1131.23 Capsicum annuum HOM05D003219 ORTHO05D005190 1.2e-73 280.4 267 57.7
Solyc01g086990.3 Solanum lycopersicum HOM05D003219 ORTHO05D005190 1.2e-73 280.4 262 58.4
Sopen01g034000 Solanum pennellii HOM05D003219 ORTHO05D005190 1.2e-73 280.4 262 58.4
Glyma.15G068100 Glycine max HOM05D003219 ORTHO05D005190 1.5e-73 280.0 257 58.8
Cfa000363 Carpinus fangiana HOM05D003219 ORTHO05D005190 2.6e-73 279.3 260 58.8
Nitab4.5_0005198g0010 Nicotiana tabacum HOM05D003219 ORTHO05D005190 2.6e-73 279.3 263 58.6
MSTRG.28076 Avicennia marina HOM05D003219 ORTHO05D005190 3.4e-73 278.9 266 57.9
Lj6g0004744 Lotus japonicus HOM05D003219 ORTHO05D005190 3.4e-73 278.9 258 59.3
Haze_06562 Corylus avellana HOM05D003219 ORTHO05D005190 4.4e-73 278.5 258 57.8
Phvul.006G191500 Phaseolus vulgaris HOM05D003219 ORTHO05D005190 4.4e-73 278.5 258 58.5
Ca_00267_v3 Cicer arietinum L. HOM05D003219 ORTHO05D005190 5.7e-73 278.1 258 58.1
CANSAT78G1072 Cannabis sativa HOM05D003219 ORTHO05D005190 7.5e-73 277.7 263 58.6
CiPaw.09G158900 Carya illinoinensis HOM05D003219 ORTHO05D005190 7.5e-73 277.7 258 57.8
CsaV3_6G049830 Cucumis sativus L. HOM05D003219 ORTHO05D005190 7.5e-73 277.7 259 59.1
Manes.16G021600 Manihot esculenta HOM05D003219 ORTHO05D005190 9.8e-73 277.3 261 58.6
QL05p081849 Quercus lobata HOM05D003219 ORTHO05D005190 9.8e-73 277.3 262 59.2
Eucgr.E03448 Eucalyptus grandis HOM05D003219 ORTHO05D005190 1.7e-72 276.6 261 57.9
ClCG01G022630 Citrullus lanatus HOM05D003219 ORTHO05D005190 2.9e-72 275.8 259 58.7
Dinv40503 Davidia involucrata HOM05D003219 ORTHO05D005190 2.9e-72 275.8 260 58.8
arahy.Tifrunner.gnm1.ann1.AH329K Arachis hypogaea HOM05D003219 ORTHO05D005190 3.7e-72 275.4 274 56.6
MD10G1302200 Malus domestica HOM05D003219 ORTHO05D005190 3.7e-72 275.4 261 58.2
PSO339G3037 Papaver somniferum HOM05D003219 ORTHO05D005190 1.1e-71 273.9 259 57.9
Duzib235G0214 Durio zibethinus HOM05D003219 ORTHO05D005190 1.4e-71 273.5 260 58.8
PSO384G2756 Papaver somniferum HOM05D003219 ORTHO05D005190 2.4e-71 272.7 259 57.9
Ciclev10014187m.g Citrus clementina HOM05D003219 ORTHO05D005190 3.2e-71 272.3 260 57.7
FAN16G0751 Fragaria x ananassa HOM05D003219 ORTHO05D005190 3.2e-71 272.3 244 61.5
Gohir.D05G167800 Gossypium hirsutum HOM05D003219 ORTHO05D005190 7.0e-71 271.2 260 58.1
Gorai.009G172900 Gossypium raimondii HOM05D003219 ORTHO05D005190 7.0e-71 271.2 260 58.1
RcHm_v2.0_Chr5g0006601 Rosa chinensis HOM05D003219 ORTHO05D005190 7.0e-71 271.2 260 57.7
MD05G1324400 Malus domestica HOM05D003219 ORTHO05D005190 9.2e-71 270.8 261 57.1
Atru.chr10.1995 Acer truncatum HOM05D003219 ORTHO05D005190 1.2e-70 270.4 260 57.3
PGR042G1909 Punica granatum HOM05D003219 ORTHO05D005190 1.2e-70 270.4 262 56.5
Cc02_g12290 Coffea canephora HOM05D003219 ORTHO05D005190 2.0e-70 269.6 258 57.4
Sed0027994 Sechium edule HOM05D003219 ORTHO05D005190 2.0e-70 269.6 261 57.1
Hund25208 Selenicereus undatus HOM05D003219 ORTHO05D005190 2.0e-70 269.6 266 56.0
Hma1.2p1_0144F.1_g064800 Hydrangea macrophylla HOM05D003219 ORTHO05D005190 2.7e-70 269.2 269 56.1
Thecc.06G197600 Theobroma cacao HOM05D003219 ORTHO05D005190 3.5e-70 268.9 258 58.1
COL.COLO4_31569 Corchorus olitorius HOM05D003219 ORTHO05D005190 4.6e-70 268.5 260 58.1
Gohir.A05G164800 Gossypium hirsutum HOM05D003219 ORTHO05D005190 4.6e-70 268.5 260 57.3
AL6G40770 Arabidopsis lyrata HOM05D003219 ORTHO05D005190 1.3e-69 266.9 233 64.8
TAR369G0028 Trochodendron aralioides HOM05D003219 ORTHO05D005190 1.3e-69 266.9 261 55.9
Migut.N01473 Erythranthe guttata HOM05D003219 ORTHO05D005190 1.7e-69 266.5 271 54.2
Peaxi162Scf00428g00711 Petunia axillaris HOM05D003219 ORTHO05D005190 2.3e-69 266.2 263 55.9
Rhsim13G0173900 Rhododendron simsii HOM05D003219 ORTHO05D005190 2.3e-69 266.2 261 56.3
SalBow6G2379 Salvia bowleyana HOM05D003219 ORTHO05D005190 3.0e-69 265.8 266 55.6
Aqoxy5G02588 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 3.9e-69 265.4 261 55.6
EL10Ac6g13262 Beta vulgaris HOM05D003219 ORTHO05D005190 3.9e-69 265.4 264 57.2
vmacro03828 Vaccinium macrocarpon HOM05D003219 ORTHO05D005190 5.0e-69 265.0 261 56.3
vmacro23297 Vaccinium macrocarpon HOM05D003219 ORTHO05D005190 5.0e-69 265.0 261 56.3
ATR0753G017 Amborella trichopoda HOM05D003219 ORTHO05D005190 3.3e-68 262.3 261 56.3
MBI19_g24733_MAGBIO Magnolia biondii HOM05D003219 ORTHO05D005190 4.3e-68 261.9 259 55.6
ATR0564G130 Amborella trichopoda HOM05D003219 ORTHO05D005190 5.6e-68 261.5 266 55.3
CDE04G1938 Ceratophyllum demersum HOM05D003219 ORTHO05D005190 1.2e-67 260.4 257 56.8
Sc17g0006530 Simmondsia chinensis HOM05D003219 ORTHO05D005190 1.6e-67 260.0 259 55.6
Cpa.g.sc27.112 Carica papaya HOM05D003219 ORTHO05D005190 3.6e-67 258.8 261 54.0
unitig_578.g16698 Utricularia gibba HOM05D003219 ORTHO05D005190 3.6e-67 258.8 257 54.5
FAN11G2522 Fragaria x ananassa HOM05D003219 ORTHO05D005190 1.0e-66 257.3 262 56.9
FAN21G1982 Fragaria x ananassa HOM05D003219 ORTHO05D005190 3.1e-66 255.8 262 56.1
FAN25G3232 Fragaria x ananassa HOM05D003219 ORTHO05D005190 3.1e-66 255.8 262 56.1
HPP92_001897 Vanilla planifolia HOM05D003219 ORTHO05D005190 3.1e-66 255.8 262 54.2
Prupe.5G013200 Prunus persica HOM05D003219 ORTHO05D005190 4.0e-66 255.4 259 54.8
HPP92_001864 Vanilla planifolia HOM05D003219 ORTHO05D005190 1.2e-65 253.8 262 53.8
DCAR_003206 Daucus carota HOM05D003219 ORTHO05D005190 5.8e-65 251.5 260 54.2
Rhsim10G0099900 Rhododendron simsii HOM05D003219 ORTHO05D005190 5.8e-65 251.5 261 52.9
AUR62034479 Chenopodium quinoa HOM05D003219 ORTHO05D005190 7.5e-65 251.1 262 56.1
AUR62018141 Chenopodium quinoa HOM05D003219 ORTHO05D005190 1.3e-64 250.4 262 55.7
Lsat_1_v5_gn_1_110001 Lactuca sativa HOM05D003219 ORTHO05D005190 3.7e-64 248.8 274 53.6
RcHm_v2.0_Chr7g0193971 Rosa chinensis HOM05D003219 ORTHO05D005190 3.7e-64 248.8 259 54.4
MELO3C007313.2 Cucumis melo HOM05D003219 ORTHO05D005190 6.4e-64 248.1 320 47.5
RhsimUnG0236300 Rhododendron simsii HOM05D003219 ORTHO05D005190 6.4e-64 248.1 263 53.6
SGA_v2.0_scaffold5G02978 Striga asiatica HOM05D003219 ORTHO05D005190 1.1e-63 247.3 256 52.0
DCAR_025033 Daucus carota HOM05D003219 ORTHO05D005190 1.4e-63 246.9 261 53.6
Migut.N01591 Erythranthe guttata HOM05D003219 ORTHO05D005190 2.4e-63 246.1 270 52.6
Phvul.006G191100 Phaseolus vulgaris HOM05D003219 ORTHO05D005190 5.4e-63 245.0 270 52.2
SEGI_12412 Sequoiadendron giganteum HOM05D003219 ORTHO05D005190 5.4e-63 245.0 263 53.6
SEGI_14928 Sequoiadendron giganteum HOM05D003219 ORTHO05D005190 5.4e-63 245.0 263 53.6
Nn2g13017 Nelumbo nucifera HOM05D003219 ORTHO05D005190 6.0e-62 241.5 263 52.9
Ah.03g134710 Amaranthus hybridus HOM05D003219 ORTHO05D005190 7.8e-62 241.1 263 53.2
Rhsim07G0241400 Rhododendron simsii HOM05D003219 ORTHO05D005190 3.9e-61 238.8 264 51.9
Lj9A630T39 Lonicera japonica HOM05D003219 ORTHO05D005190 6.6e-61 238.0 261 51.7
Manes.17G039900 Manihot esculenta HOM05D003219 ORTHO05D005190 2.3e-58 229.6 259 52.9
Mapoly0119s0057 Marchantia polymorpha HOM05D003219 ORTHO05D005190 2.3e-58 229.6 258 51.2
ECA248G3185 Erigeron canadensis HOM05D003219 ORTHO05D005190 6.8e-58 228.0 259 51.0
AagrBONN_evm.TU.Sc2ySwM_344.294 Anthoceros agrestis HOM05D003219 ORTHO05D005190 2.0e-57 226.5 257 51.0
Os07g0644300 Oryza sativa ssp. japonica HOM05D003219 ORTHO05D005190 5.8e-57 224.9 266 48.9
Zm00001eb110380 Zea mays HOM05D003219 ORTHO05D005190 6.4e-56 221.5 266 48.5
Actinidia05586 Actinidia chinensis HOM05D003219 ORTHO05D005190 3.2e-55 219.2 224 53.6
HanXRQChr01g0016091 Helianthus annuus HOM05D003219 ORTHO05D005190 4.6e-54 215.3 265 50.6
Pp3c1_10210 Physcomitrium patens HOM05D003219 ORTHO05D005190 1.3e-53 213.8 260 50.4
Zm00001eb329230 Zea mays HOM05D003219 ORTHO05D005190 1.7e-53 213.4 237 50.2
Prupe.4G035800 Prunus persica HOM05D003219 ORTHO05D005190 3.0e-53 212.6 223 54.7
Oeu015223.1 Olea europaea HOM05D003219 ORTHO05D005190 8.6e-53 211.1 222 55.0
Dinv39809 Davidia involucrata HOM05D003219 ORTHO05D018367 2.8e-51 206.1 225 54.7
QL03p054350 Quercus lobata HOM05D003219 ORTHO05D005190 1.2e-49 200.7 222 53.2
GSVIVG01006714001 Vitis vinifera HOM05D003219 ORTHO05D005190 2.6e-49 199.5 222 51.4
CDE07G0042 Ceratophyllum demersum HOM05D003219 ORTHO05D005190 1.3e-48 197.2 215 53.5
SHI02082 Sapria himalayana HOM05D003219 ORTHO05D005190 1.9e-47 193.4 194 55.2
FvH4_3g04150 Fragaria vesca HOM05D003219 ORTHO05D005190 5.1e-45 185.3 191 55.0
ECA247G0108 Erigeron canadensis HOM05D003219 ORTHO05D005190 2.8e-43 179.5 262 45.0
CBR_g3193 Chara braunii HOM05D003219 ORTHO05D005190 1.8e-42 176.8 256 43.8
MBI11_g22684_MAGBIO Magnolia biondii HOM05D003219 ORTHO05D005190 1.8e-42 176.8 231 45.0
FAN11G2280 Fragaria x ananassa HOM05D003219 ORTHO05D005190 6.9e-42 174.9 209 49.3
FvH4_3g03910 Fragaria vesca HOM05D003219 ORTHO05D005190 5.8e-41 171.8 209 46.9
FAN16G0728 Fragaria x ananassa HOM05D003219 ORTHO05D005190 5.8e-41 171.8 209 46.9
AL2G15710 Arabidopsis lyrata HOM05D003219 ORTHO05D005190 1.7e-40 170.2 187 50.8
ECA240G1068 Erigeron canadensis HOM05D003219 ORTHO05D005190 1.7e-40 170.2 189 50.3
SGA_v2.0_scaffold24G10682 Striga asiatica HOM05D003219 ORTHO05D005190 1.9e-39 166.8 254 42.9
SMO358G0499 Selaginella moellendorffii HOM05D003219 ORTHO05D005190 7.1e-39 164.9 190 47.9
COL.COLO4_30962 Corchorus olitorius HOM05D003219 ORTHO05D005190 6.0e-38 161.8 188 47.9
Sabra04G0021600 Salix brachista HOM05D003219 ORTHO05D005190 3.6e-35 152.5 128 63.3
PRCOL_00006288 Prasinoderma coloniale HOM05D003219 ORTHO05D005190 1.5e-33 147.1 272 37.1
Aqoxy7G03800 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 1.7e-32 143.7 190 42.1
Cre12.g513500 Chlamydomonas reinhardtii HOM05D003219 ORTHO05D005190 3.5e-30 136.0 196 41.8
Os06g0235800 Oryza sativa ssp. japonica HOM05D003219 ORTHO05D005190 5.1e-29 132.1 215 37.7
Cfa023613 Carpinus fangiana HOM05D003219 ORTHO05D005190 1.9e-28 130.2 258 34.9
Haze_26834 Corylus avellana HOM05D003219 ORTHO05D005190 1.6e-27 127.1 194 39.2
A06p38060 Brassica napus HOM05D003219 ORTHO05D024673 8.1e-27 124.8 174 47.1
BraA06t26721Z Brassica rapa HOM05D003219 ORTHO05D024673 8.1e-27 124.8 174 47.1
MCO01G142 Micromonas commoda HOM05D003219 ORTHO05D005190 2.0e-25 120.2 194 35.6
BcaNung05343 Brassica carinata HOM05D003219 ORTHO05D005190 1.3e-24 117.5 176 40.3
Sopen03g007850 Solanum pennellii HOM05D003219 ORTHO05D005190 4.9e-24 115.5 75 73.3
C09p21320 Brassica napus HOM05D002061 ORTHO05D032307 1.9e-23 113.6 170 38.8
BcaC04g22273 Brassica carinata HOM05D002061 ORTHO05D032307 2.7e-22 109.8 170 37.6
Medtr2g031710 Medicago truncatula HOM05D003219 ORTHO05D024673 4.6e-22 109.0 84 63.1
RcHm_v2.0_Chr5g0006181 Rosa chinensis HOM05D003219 ORTHO05D018367 6.7e-21 105.1 92 57.6
Actinidia01932 Actinidia chinensis HOM05D003219 ORTHO05D005190 1.5e-20 104.0 123 47.2
Thecc.01G128700 Theobroma cacao HOM05D003219 ORTHO05D024673 2.5e-20 103.2 131 44.3
FAN21G0395 Fragaria x ananassa HOM05D003219 ORTHO05D005190 2.1e-19 100.1 151 40.4
Aqoxy7G04117 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 8.1e-19 98.2 72 63.9
BcaC05g27821 Brassica carinata HOM05D003219 ORTHO05D020042 4.0e-18 95.9 111 58.6
C05p38210 Brassica napus HOM05D003219 ORTHO05D020042 4.0e-18 95.9 111 58.6
BolC5t32549H Brassica oleracea HOM05D003219 ORTHO05D020042 4.0e-18 95.9 111 58.6
A10p11140 Brassica napus HOM05D003219 ORTHO05D020042 4.5e-17 92.4 66 74.2
AagrBONN_evm.TU.Sc2ySwM_228.1014 Anthoceros agrestis HOM05D003219 ORTHO05D018367 1.4e-15 87.4 90 51.1
RcHm_v2.0_Chr5g0006191 Rosa chinensis HOM05D003219 ORTHO05D005190 1.8e-13 80.5 53 69.8
C04p20450 Brassica napus HOM05D011137 ORTHO05D020042 5.1e-13 79.0 110 50.9
ATR0753G021 Amborella trichopoda HOM05D003219 ORTHO05D031110 4.3e-12 75.9 71 60.6
BcaC06g30685 Brassica carinata HOM05D003219 ORTHO05D032336 4.3e-12 75.9 104 52.9
Aqoxy7G01388 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 2.1e-11 73.6 68 54.4
AUR62042994 Chenopodium quinoa HOM05D003219 ORTHO05D018367 2.8e-11 73.2 132 35.6
A09p17210 Brassica napus HOM05D003219 ORTHO05D032307 1.8e-10 70.5 54 57.4
Sp1g37090 Schrenkiella parvula HOM05D003219 ORTHO05D371541 2.0e-09 67.0 46 71.7
BcaC02g10920 Brassica carinata HOM05D003219 ORTHO05D027510 3.4e-09 66.2 51 66.7
Os01g0686600 Oryza sativa ssp. japonica HOM05D003219 ORTHO05D005190 1.7e-08 63.9 92 40.2
FAN21G3557 Fragaria x ananassa HOM05D003219 ORTHO05D005190 1.4e-07 60.8 31 83.9
A04p05940 Brassica napus HOM05D003219 ORTHO05D098675 1.9e-07 60.5 112 40.2
C04p23680 Brassica napus HOM05D003219 ORTHO05D027510 9.3e-07 58.2 177 33.3
BraA10t43207Z Brassica rapa HOM05D011137 ORTHO05D020042 1.2e-06 57.8 31 90.3
Potri.011G043812 Populus trichocarpa HOM05D003219 ORTHO05D005190 1.2e-06 57.8 40 67.5
BcaB04g19106 Brassica carinata HOM05D003219 ORTHO05D032346 2.1e-06 57.0 32 84.4
AagrBONN_evm.TU.Sc2ySwM_228.1255 Anthoceros agrestis HOM05D003219 ORTHO05D018367 4.6e-06 55.8 87 34.5
BolC4t23865H Brassica oleracea HOM05D003219 ORTHO05D027510 4.6e-06 55.8 177 33.3


User provided reference genes

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