Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p39960 Brassica napus HOM05D006288 ORTHO05D007416 1.1e-72 276.6 148 100.0
BolC7t44529H Brassica oleracea HOM05D006288 ORTHO05D007416 6.5e-52 207.6 111 98.2
BraA06t26742Z Brassica rapa HOM05D006288 ORTHO05D007416 1.2e-50 203.4 111 97.3
THA.LOC104805112 Tarenaya hassleriana HOM05D006288 ORTHO05D007416 4.5e-37 158.3 104 76.9
Carub.0008s0943 Capsella rubella HOM05D006288 ORTHO05D007416 3.8e-36 155.2 109 77.1
Gohir.D12G056100 Gossypium hirsutum HOM05D006288 ORTHO05D007416 5.6e-35 151.4 104 74.0
Gorai.008G059200 Gossypium raimondii HOM05D006288 ORTHO05D007416 5.6e-35 151.4 104 74.0
Cpa.g.sc14.255 Carica papaya HOM05D006288 ORTHO05D007416 2.1e-34 149.4 104 72.1
Gohir.A12G056700 Gossypium hirsutum HOM05D006288 ORTHO05D007416 2.8e-34 149.1 104 73.1
Duzib133G0644 Durio zibethinus HOM05D006288 ORTHO05D007416 4.7e-34 148.3 104 72.1
Duzib133G1254 Durio zibethinus HOM05D006288 ORTHO05D007416 4.7e-34 148.3 104 72.1
Ca_13697_v3 Cicer arietinum L. HOM05D006288 ORTHO05D007416 1.4e-33 146.7 108 67.6
PGR004G0851 Punica granatum HOM05D006288 ORTHO05D007416 1.8e-33 146.4 104 68.3
Thecc.10G108100 Theobroma cacao HOM05D005170 ORTHO05D007416 1.8e-33 146.4 117 66.7
vmacro18118 Vaccinium macrocarpon HOM05D006288 ORTHO05D007416 3.0e-33 145.6 103 68.9
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 4.0e-33 145.2 117 67.5
GSVIVG01036516001 Vitis vinifera HOM05D006288 ORTHO05D007416 4.0e-33 145.2 104 70.2
Lj3g0015520 Lotus japonicus HOM05D006288 ORTHO05D007416 5.2e-33 144.8 106 67.0
Rhsim10G0068900 Rhododendron simsii HOM05D006288 ORTHO05D007416 6.8e-33 144.4 103 68.0
Medtr3g034300 Medicago truncatula HOM05D006288 ORTHO05D007416 8.9e-33 144.1 108 64.8
TPR.G14566 Trifolium pratense HOM05D006288 ORTHO05D007416 8.9e-33 144.1 104 68.3
VMungo0464G1523 Vigna mungo HOM05D006288 ORTHO05D007416 8.9e-33 144.1 107 66.4
Cc07_g04640 Coffea canephora HOM05D006288 ORTHO05D007416 1.2e-32 143.7 111 65.8
Cfa007713 Carpinus fangiana HOM05D006288 ORTHO05D007416 1.5e-32 143.3 104 68.3
Manes.02G062500 Manihot esculenta HOM05D006288 ORTHO05D007416 1.5e-32 143.3 104 68.3
Sc11g0008960 Simmondsia chinensis HOM05D006288 ORTHO05D007416 1.5e-32 143.3 104 65.4
Oeu007090.1 Olea europaea HOM05D006288 ORTHO05D007416 2.6e-32 142.5 104 68.3
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 3.4e-32 142.1 81 90.1
Glyma.13G051400 Glycine max HOM05D006288 ORTHO05D007416 3.4e-32 142.1 104 66.3
Glyma.19G037000 Glycine max HOM05D006288 ORTHO05D007416 3.4e-32 142.1 108 65.7
TAR629G2245 Trochodendron aralioides HOM05D006288 ORTHO05D007416 3.4e-32 142.1 108 63.9
Psat5g210920 Pisum sativum HOM05D006288 ORTHO05D007416 4.4e-32 141.7 108 63.9
Rhsim08G0078400 Rhododendron simsii HOM05D006288 ORTHO05D007416 4.4e-32 141.7 103 66.0
RcHm_v2.0_Chr2g0164421 Rosa chinensis HOM05D006288 ORTHO05D007416 4.4e-32 141.7 104 68.3
CSS0015874 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 5.8e-32 141.4 104 67.3
CSS0028097 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 5.8e-32 141.4 104 67.3
Lalb_Chr21g0318141 Lupinus albus HOM05D006288 ORTHO05D007416 5.8e-32 141.4 108 64.8
Phvul.004G044700 Phaseolus vulgaris HOM05D006288 ORTHO05D007416 5.8e-32 141.4 108 64.8
Manes.01G106000 Manihot esculenta HOM05D006288 ORTHO05D007416 7.5e-32 141.0 104 66.3
PSO832G2920 Papaver somniferum HOM05D006288 ORTHO05D007416 7.5e-32 141.0 109 65.1
Hund16253 Selenicereus undatus HOM05D006288 ORTHO05D007416 7.5e-32 141.0 104 65.4
A09p04890 Brassica napus HOM05D006288 ORTHO05D007416 9.8e-32 140.6 110 70.0
Dinv34894 Davidia involucrata HOM05D006288 ORTHO05D007416 9.8e-32 140.6 104 65.4
PSO210G6985 Papaver somniferum HOM05D006288 ORTHO05D007416 9.8e-32 140.6 109 64.2
Prupe.3G247000 Prunus persica HOM05D006288 ORTHO05D007416 9.8e-32 140.6 104 68.3
BcaB04g19620 Brassica carinata HOM05D006288 ORTHO05D007416 1.3e-31 140.2 110 70.0
arahy.Tifrunner.gnm1.ann1.J0I6JM Arachis hypogaea HOM05D006288 ORTHO05D007416 2.2e-31 139.4 104 65.4
PSO541G1058 Papaver somniferum HOM05D006288 ORTHO05D007416 2.2e-31 139.4 110 64.5
Psat5g210840 Pisum sativum HOM05D006288 ORTHO05D007416 2.2e-31 139.4 108 63.0
ATR0691G027 Amborella trichopoda HOM05D006288 ORTHO05D007416 2.9e-31 139.0 108 61.1
MD09G1077100 Malus domestica HOM05D006288 ORTHO05D007416 2.9e-31 139.0 103 68.0
PSO675G0562 Papaver somniferum HOM05D006288 ORTHO05D007416 2.9e-31 139.0 110 63.6
Migut.K00879 Erythranthe guttata HOM05D006288 ORTHO05D007416 3.7e-31 138.7 104 65.4
Hma1.2p1_0304F.1_g119265 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.7e-31 138.7 104 67.3
Hma1.2p1_0304F.1_g119270 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.7e-31 138.7 104 67.3
Peaxi162Scf00019g00316 Petunia axillaris HOM05D006288 ORTHO05D007416 3.7e-31 138.7 104 67.3
Atru.chr8.595 Acer truncatum HOM05D006288 ORTHO05D007416 4.9e-31 138.3 104 65.4
CANSAT64G2264 Cannabis sativa HOM05D005170 ORTHO05D007416 4.9e-31 138.3 102 67.6
MD17G1067500 Malus domestica HOM05D006288 ORTHO05D007416 4.9e-31 138.3 104 67.3
TWI60G1717 Tripterygium wilfordii HOM05D006288 ORTHO05D007416 4.9e-31 138.3 103 67.0
BcaC04g23731 Brassica carinata HOM05D006288 ORTHO05D007416 8.3e-31 137.5 78 89.7
Eucgr.F02878 Eucalyptus grandis HOM05D006288 ORTHO05D007416 8.3e-31 137.5 105 65.7
CsaV3_4G009920 Cucumis sativus L. HOM05D006288 ORTHO05D007416 1.9e-30 136.3 102 63.7
Nitab4.5_0003203g0060 Nicotiana tabacum HOM05D006288 ORTHO05D007416 1.9e-30 136.3 104 64.4
Ah.16g100880 Amaranthus hybridus HOM05D006288 ORTHO05D007416 2.4e-30 136.0 104 62.5
Solyc02g065690.3 Solanum lycopersicum HOM05D006288 ORTHO05D007416 2.4e-30 136.0 104 64.4
Sopen02g015910 Solanum pennellii HOM05D006288 ORTHO05D007416 2.4e-30 136.0 104 64.4
CSS0016762 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 3.2e-30 135.6 103 65.0
CSS0047986 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 3.2e-30 135.6 103 65.0
SalBow7G0779 Salvia bowleyana HOM05D006288 ORTHO05D007416 3.2e-30 135.6 107 66.4
CiPaw.03G081300 Carya illinoinensis HOM05D006288 ORTHO05D007416 4.1e-30 135.2 104 63.5
Sp2g19860 Schrenkiella parvula HOM05D006288 ORTHO05D007416 5.4e-30 134.8 110 67.3
PGSC0003DMG400026550 Solanum tuberosum HOM05D006288 ORTHO05D007416 5.4e-30 134.8 104 63.5
CSS0029131 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 7.0e-30 134.4 104 65.4
QL09p029462 Quercus lobata HOM05D006288 ORTHO05D007416 1.2e-29 133.7 106 62.3
Psat5g212400 Pisum sativum HOM05D006288 ORTHO05D007416 1.6e-29 133.3 106 61.3
Zm00001eb234970 Zea mays HOM05D006288 ORTHO05D007416 1.6e-29 133.3 104 62.5
Os02g0190900 Oryza sativa ssp. japonica HOM05D006288 ORTHO05D007416 2.7e-29 132.5 109 61.5
Thhalv10005135m.g Eutrema salsugineum HOM05D006288 ORTHO05D007416 6.0e-29 131.3 79 87.3
SGA_v2.0_scaffold30G12393 Striga asiatica HOM05D006288 ORTHO05D007416 7.8e-29 131.0 111 59.5
CARHR287980 Cardamine hirsuta HOM05D006288 ORTHO05D007416 8.6e-28 127.5 110 64.5
FAN10G3625 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.5e-27 126.7 96 64.6
Sabra17G0089200 Salix brachista HOM05D006288 ORTHO05D007416 1.5e-27 126.7 93 68.8
Aa31LG7G12050 Aethionema arabicum HOM05D006288 ORTHO05D007416 1.9e-27 126.3 103 66.0
AT5G49550 Arabidopsis thaliana HOM05D006288 ORTHO05D007416 5.6e-27 124.8 77 84.4
AL954U10010 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 7.3e-27 124.4 110 64.5
Lsat_1_v5_gn_4_174040 Lactuca sativa HOM05D006288 ORTHO05D007416 9.5e-27 124.0 111 55.0
Actinidia17612 Actinidia chinensis HOM05D006288 ORTHO05D007416 1.2e-26 123.6 99 62.6
FAN10G2886 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.1e-26 122.9 100 61.0
SEGI_23755 Sequoiadendron giganteum HOM05D006288 ORTHO05D007416 2.1e-26 122.9 102 57.8
HPP92_018391 Vanilla planifolia HOM05D006288 ORTHO05D007416 2.1e-26 122.9 111 60.4
AL8G23340 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 2.8e-26 122.5 71 87.3
unitig_32.g10759 Utricularia gibba HOM05D006288 ORTHO05D007416 6.2e-26 121.3 104 55.8
Atru.BG.156.p Acer truncatum HOM05D006288 ORTHO05D007416 1.8e-25 119.8 92 62.0
EL10Ac2g04409 Beta vulgaris HOM05D006288 ORTHO05D007416 3.4e-24 115.5 90 62.2
AUR62023135 Chenopodium quinoa HOM05D006288 ORTHO05D007416 7.5e-24 114.4 93 58.1
FAN14G1171 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.1e-22 110.5 104 54.8
Actinidia26277 Actinidia chinensis HOM05D006288 ORTHO05D007416 9.2e-22 107.5 78 65.4
CDE10G0042 Ceratophyllum demersum HOM05D006288 ORTHO05D007416 9.2e-22 107.5 94 54.3
Potri.017G106200 Populus trichocarpa HOM05D006288 ORTHO05D007416 4.6e-21 105.1 78 66.7
Mapoly0015s0174 Marchantia polymorpha HOM05D006288 ORTHO05D007416 6.0e-21 104.8 108 48.1
Nn4g23570 Nelumbo nucifera HOM05D006288 ORTHO05D007416 6.0e-21 104.8 78 65.4
CAN.G93.47 Capsicum annuum HOM05D006288 ORTHO05D007416 1.3e-20 103.6 104 51.9
DCAR_011002 Daucus carota HOM05D006288 ORTHO05D007416 3.0e-20 102.4 70 68.6
MELO3C018910.2 Cucumis melo HOM05D006288 ORTHO05D007416 8.6e-20 100.9 78 61.5
Sed0021882 Sechium edule HOM05D006288 ORTHO05D007416 8.6e-20 100.9 78 62.8
ClCG07G016140 Citrullus lanatus HOM05D006288 ORTHO05D007416 1.5e-19 100.1 78 60.3
COL.COLO4_00228 Corchorus olitorius HOM05D006288 ORTHO05D007416 3.3e-19 99.0 70 68.6
Lsat_1_v5_gn_4_173980 Lactuca sativa HOM05D006288 ORTHO05D007416 3.3e-19 99.0 84 57.1
Nitab4.5_0002249g0090 Nicotiana tabacum HOM05D006288 ORTHO05D007416 7.3e-19 97.8 70 65.7
FAN05G5526 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.8e-18 95.9 69 68.1
FAN02G0987 Fragaria x ananassa HOM05D006288 ORTHO05D007416 4.7e-18 95.1 69 68.1
FAN09G1057 Fragaria x ananassa HOM05D010582 ORTHO05D007416 4.7e-18 95.1 69 68.1
ECA232G4388 Erigeron canadensis HOM05D006288 ORTHO05D007416 8.1e-18 94.4 75 60.0
Pp3c21_3840 Physcomitrium patens HOM05D006288 ORTHO05D007416 2.3e-17 92.8 104 45.2
Hma1.2p1_2186F.1_g316383 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.1e-17 92.4 70 61.4
Hma1.2p1_3488F.1_g336360 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.1e-17 92.4 70 61.4
TAR371G0310 Trochodendron aralioides HOM05D006288 ORTHO05D007416 8.9e-17 90.9 94 50.0
Eucgr.K01979 Eucalyptus grandis HOM05D006288 ORTHO05D007416 1.5e-16 90.1 89 59.6
FvH4_6g24710 Fragaria vesca HOM05D006288 ORTHO05D007416 9.9e-16 87.4 59 71.2
FAN14G4004 Fragaria x ananassa HOM05D006288 ORTHO05D007416 9.9e-16 87.4 59 71.2
AagrBONN_evm.TU.Sc2ySwM_344.2644 Anthoceros agrestis HOM05D006288 ORTHO05D007416 2.9e-15 85.9 104 43.3
FvH4_6g46100 Fragaria vesca HOM05D006288 ORTHO05D007416 3.7e-15 85.5 64 65.6
HanXRQChr15g0464891 Helianthus annuus HOM05D006288 ORTHO05D007416 7.1e-14 81.3 63 61.9
SMO358G0122 Selaginella moellendorffii HOM05D006288 ORTHO05D007416 6.6e-12 74.7 95 37.9
SHI46878 Sapria himalayana HOM05D006288 ORTHO05D007416 2.5e-11 72.8 71 45.1
CARHR263050 Cardamine hirsuta HOM05D006288 ORTHO05D007416 6.2e-10 68.2 63 55.6
Psat6g174640 Pisum sativum HOM05D006288 ORTHO05D007416 3.4e-08 62.4 46 65.2
Haze_03283 Corylus avellana HOM05D002280 ORTHO05D002322 2.4e-06 56.2 43 62.8


User provided reference genes

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