Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 0.0e+00 1287.7 688 100.0
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 0.0e+00 1263.1 697 96.8
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 0.0e+00 1251.1 693 95.8
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 0.0e+00 1250.3 693 95.8
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.1e-282 976.5 699 78.7
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 5.9e-265 917.5 692 75.3
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 3.7e-251 871.7 703 72.3
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.2e-242 842.0 700 69.0
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 6.2e-238 827.8 697 68.7
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.8e-230 801.6 696 67.5
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.0e-200 704.1 521 78.3
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 9.4e-194 681.0 705 58.2
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 4.1e-189 665.6 696 54.7
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 5.9e-164 582.0 513 65.5
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.7e-142 510.8 472 61.2
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 2.4e-141 506.9 713 45.6
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 2.4e-141 506.9 720 44.0
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 3.2e-141 506.5 721 42.7
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 6.0e-140 502.3 654 44.0
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 6.6e-139 498.8 716 43.3
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 4.3e-138 496.1 642 47.0
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 4.7e-137 492.7 657 46.3
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 1.8e-136 490.7 708 42.8
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.2e-135 488.0 712 42.6
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 2.0e-135 487.3 707 44.7
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 8.3e-134 481.9 725 42.8
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 1.9e-133 480.7 711 43.2
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.8e-132 475.3 705 45.4
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.0e-131 474.9 664 45.3
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.3e-131 474.6 705 45.4
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.3e-131 474.6 699 44.9
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 3.0e-131 473.4 712 40.4
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 3.9e-131 473.0 736 41.8
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.9e-130 470.7 722 42.2
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.9e-130 470.7 722 42.7
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.2e-129 465.7 709 44.7
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 2.4e-128 463.8 657 42.8
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 2.6e-127 460.3 727 41.3
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 6.4e-126 455.7 656 43.3
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.4e-126 455.7 648 43.8
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.1e-125 454.9 710 41.8
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 3.2e-125 453.4 708 42.5
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 9.2e-125 451.8 702 41.9
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.7e-124 450.3 717 42.0
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 2.7e-124 450.3 704 41.6
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 1.9e-122 444.1 699 40.3
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 8.1e-121 438.7 717 43.0
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.1e-120 438.3 715 40.3
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 2.4e-120 437.2 701 40.2
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 6.9e-120 435.6 710 40.3
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 5.8e-119 432.6 691 39.4
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 5.8e-119 432.6 669 42.5
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 2.9e-118 430.3 712 40.2
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 6.4e-118 429.1 733 38.7
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 2.7e-116 423.7 716 41.8
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 6.0e-116 422.5 679 41.8
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.0e-115 421.8 723 40.1
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.3e-115 420.6 724 38.4
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 5.1e-115 419.5 708 41.4
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 6.6e-115 419.1 721 40.1
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 1.1e-114 418.3 700 41.9
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 5.6e-114 416.0 651 41.3
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 7.3e-114 415.6 725 39.9
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 9.6e-114 415.2 714 38.8
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.8e-112 411.0 603 42.3
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 5.3e-112 409.5 740 40.0
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 6.9e-112 409.1 742 37.5
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 2.0e-111 407.5 638 42.0
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 4.2e-109 399.8 707 39.5
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.2e-109 399.8 746 37.8
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 2.1e-108 397.5 584 41.6
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 3.5e-108 396.7 672 39.3
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.0e-107 395.2 592 40.5
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.3e-107 394.0 617 40.5
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 8.7e-107 392.1 728 38.7
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 1.1e-106 391.7 704 39.1
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.5e-106 391.3 594 40.7
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 5.6e-106 389.4 583 40.7
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 9.6e-106 388.7 704 38.6
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.7e-105 386.7 779 37.5
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 6.9e-104 382.5 734 38.4
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 9.0e-104 382.1 708 39.3
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 1.7e-102 377.9 585 42.1
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.6e-100 371.3 686 37.9
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 3.3e-98 363.6 696 35.5
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 9.6e-98 362.1 720 36.1
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 3.7e-97 360.1 542 41.7
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 3.4e-95 353.6 703 35.7
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.7e-94 351.3 706 36.3
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.9e-94 350.5 705 35.5
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 1.9e-93 347.8 559 39.9
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 9.3e-93 345.5 687 36.2
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 1.1e-90 338.6 466 43.3
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 7.4e-90 335.9 591 38.4
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.8e-88 331.3 656 37.3
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 3.4e-87 327.0 588 34.5
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 2.5e-85 320.9 718 33.7
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.8e-83 314.7 602 35.7
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 8.2e-81 305.8 459 45.5
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 1.1e-80 305.4 498 39.8
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.8e-80 304.7 701 34.2
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.4e-79 300.4 255 74.1
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.2e-78 297.7 488 40.0
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 6.1e-76 289.7 320 55.0
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 8.8e-75 285.8 360 46.1
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.1e-74 285.4 216 69.0
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.5e-74 285.0 633 32.4
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 2.0e-74 284.6 718 30.9
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 4.4e-74 283.5 646 32.8
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 7.4e-74 282.7 473 38.7
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 7.0e-72 276.2 457 38.3
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 9.1e-72 275.8 321 53.3
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.2e-71 275.4 691 32.7
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 1.7e-70 271.6 495 38.6
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.1e-69 268.9 574 34.8
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 4.7e-68 263.5 620 32.1
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 8.8e-67 259.2 600 35.2
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.4e-64 251.9 377 39.5
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 7.0e-64 249.6 652 29.8
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.6e-63 247.7 427 37.5
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.5e-62 242.7 574 33.1
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 4.2e-61 240.4 657 29.4
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 4.2e-61 240.4 657 29.4
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 2.7e-60 237.7 320 48.8
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.3e-57 226.5 431 38.3
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 4.2e-53 213.8 495 33.1
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.0e-52 209.5 342 39.8
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 1.1e-45 189.1 163 58.9
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 5.9e-39 166.8 113 77.0
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 3.9e-38 164.1 211 44.5
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.0e-35 156.0 230 44.3
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.1e-35 154.5 421 32.3
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.5e-34 149.8 128 56.2
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.7e-33 148.7 376 31.6
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 2.4e-32 144.8 251 45.8
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.3e-30 139.0 248 37.9
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.6e-30 136.3 119 54.6
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 2.5e-29 134.8 178 48.9
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 9.5e-29 132.9 394 29.7
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 8.3e-25 119.8 327 29.4
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 3.0e-22 111.3 202 35.6
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.9e-21 108.6 369 29.3
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 4.3e-21 107.5 65 83.1
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.8e-20 104.8 103 52.4
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 2.8e-20 104.8 127 42.5
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 2.8e-20 104.8 385 25.5
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 6.4e-17 93.6 214 32.7
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 8.3e-17 93.2 79 55.7
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.2e-16 91.3 93 50.5
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 1.6e-15 89.0 86 52.3
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 4.6e-15 87.4 186 32.8
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.3e-14 85.1 80 50.0
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 3.3e-13 81.3 121 37.2
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 9.6e-13 79.7 89 42.7
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.1e-11 76.3 103 40.8
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 2.4e-11 75.1 139 37.4
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 4.0e-11 74.3 100 42.0
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 9.9e-10 69.7 327 28.1
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 3.8e-09 67.8 589 23.6
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.2e-07 62.8 101 37.6
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 1.7e-06 58.9 153 30.7


User provided reference genes

Program Settings