Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 2.9e-117 425.2 215 100.0
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 1.9e-108 396.0 200 100.0
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 1.9e-108 396.0 200 100.0
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 5.0e-101 371.3 203 94.1
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 1.5e-89 333.2 200 86.5
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 4.4e-89 331.6 205 86.3
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 7.3e-60 234.6 207 65.7
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 4.0e-58 228.8 207 64.3
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 4.0e-58 228.8 207 64.3
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 4.0e-58 228.8 207 64.3
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 1.5e-57 226.9 207 64.3
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 1.7e-56 223.4 202 65.3
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 8.3e-56 221.1 215 66.5
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 1.6e-54 216.9 207 62.3
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 5.4e-47 191.8 208 57.2
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 2.3e-45 186.4 212 57.1
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 7.3e-44 181.4 211 55.9
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 3.6e-43 179.1 222 54.1
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 3.1e-42 176.0 209 55.5
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 8.9e-42 174.5 211 54.5
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 9.8e-41 171.0 209 53.1
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 2.9e-40 169.5 207 55.1
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 4.1e-39 165.6 208 54.3
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 7.8e-38 161.4 215 53.0
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 5.1e-37 158.7 222 49.1
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 6.6e-37 158.3 210 47.6
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 8.6e-37 157.9 207 54.6
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 2.5e-36 156.4 214 53.3
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 2.5e-36 156.4 199 53.3
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 4.3e-36 155.6 220 51.4
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 4.3e-36 155.6 213 50.7
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 5.6e-36 155.2 208 53.4
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 5.6e-36 155.2 203 52.2
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 9.5e-36 154.5 214 50.5
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 1.2e-35 154.1 213 54.0
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 1.6e-35 153.7 211 52.6
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 3.6e-35 152.5 209 52.2
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 4.7e-35 152.1 213 51.6
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 6.2e-35 151.8 199 53.8
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 1.1e-34 151.0 216 50.5
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 1.4e-34 150.6 209 51.2
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.4e-34 150.6 221 49.3
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 6.8e-34 148.3 210 52.4
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 8.9e-34 147.9 212 50.0
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.0e-33 146.7 208 47.1
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 4.4e-33 145.6 210 51.0
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 5.8e-33 145.2 97 79.4
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 9.9e-33 144.4 216 50.0
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 9.9e-33 144.4 216 50.0
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 1.3e-32 144.1 219 47.5
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 1.7e-32 143.7 207 47.8
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 2.2e-32 143.3 210 49.5
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 3.8e-32 142.5 203 43.8
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 2.4e-31 139.8 212 48.6
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 2.4e-31 139.8 206 48.1
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 4.1e-31 139.0 208 47.1
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 5.4e-31 138.7 214 46.7
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 9.2e-31 137.9 207 48.8
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.6e-30 137.1 214 46.3
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 2.7e-30 136.3 207 47.3
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.7e-30 136.3 207 47.3
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.7e-30 136.3 207 47.3
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 3.5e-30 136.0 209 48.3
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 4.6e-30 135.6 203 44.8
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 4.6e-30 135.6 214 45.3
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 4.6e-30 135.6 213 48.4
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 1.0e-29 134.4 209 47.8
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 1.7e-29 133.7 215 49.8
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 3.9e-29 132.5 220 45.0
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 3.9e-29 132.5 199 48.2
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 3.9e-29 132.5 200 48.5
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 5.1e-29 132.1 199 47.7
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 6.6e-29 131.7 211 48.3
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 8.6e-29 131.3 195 49.7
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 8.6e-29 131.3 196 45.9
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.5e-28 130.6 199 47.2
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.5e-28 129.8 198 46.0
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 3.3e-28 129.4 215 48.4
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 7.3e-28 128.3 211 45.0
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.2e-27 127.5 209 45.0
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 2.1e-27 126.7 212 44.8
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 3.6e-27 125.9 208 46.6
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 4.7e-27 125.6 214 44.4
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 6.2e-27 125.2 210 44.3
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 8.1e-27 124.8 206 46.6
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.1e-26 124.4 222 44.6
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.1e-26 124.4 218 45.9
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 1.4e-26 124.0 213 44.6
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.1e-26 122.9 208 44.2
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 4.0e-26 122.5 213 46.0
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 4.0e-26 122.5 213 46.0
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 8.9e-26 121.3 199 44.2
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 2.6e-25 119.8 216 42.1
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 3.4e-25 119.4 201 43.8
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 4.4e-25 119.0 214 41.6
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 9.9e-25 117.9 209 41.6
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 9.9e-25 117.9 218 44.5
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 1.3e-24 117.5 214 44.4
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 1.3e-24 117.5 214 44.4
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 1.3e-24 117.5 207 43.0
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 1.7e-24 117.1 200 44.0
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 3.8e-24 115.9 160 50.0
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 3.8e-24 115.9 207 42.0
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 8.4e-24 114.8 219 40.2
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.1e-23 114.4 215 43.7
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 1.4e-23 114.0 196 40.8
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 3.2e-23 112.8 212 41.5
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 7.1e-23 111.7 209 42.6
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 7.1e-23 111.7 209 44.5
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 2.1e-22 110.2 198 42.9
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 2.1e-22 110.2 209 42.1
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 4.6e-22 109.0 198 43.4
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 6.0e-22 108.6 220 38.6
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 1.7e-21 107.1 208 41.8
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 3.9e-21 105.9 203 41.9
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 1.9e-20 103.6 210 40.0
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 3.3e-20 102.8 245 38.4
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 7.3e-20 101.7 203 43.3
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.3e-19 100.9 208 41.8
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 1.3e-19 100.9 205 38.5
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 2.8e-19 99.8 208 39.4
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 6.2e-19 98.6 213 38.5
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 6.2e-19 98.6 220 36.8
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 8.1e-19 98.2 199 43.7
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 1.1e-18 97.8 206 38.8
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.1e-18 97.8 198 41.9
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 1.8e-18 97.1 189 34.9
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 3.1e-18 96.3 215 41.9
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 6.4e-16 88.6 206 36.4
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.1e-14 83.6 106 48.1
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 4.6e-14 82.4 185 35.7
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 6.0e-14 82.0 205 35.1
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 1.0e-13 81.3 207 39.1
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 5.1e-13 79.0 207 38.6
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 1.9e-12 77.0 95 50.5
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 9.6e-12 74.7 201 34.3
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 9.9e-09 64.7 151 39.7
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 1.9e-07 60.5 214 30.8
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 4.2e-07 59.3 65 58.5
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 9.3e-07 58.2 91 46.2
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.1e-06 57.0 204 28.4


User provided reference genes

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