Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p39030 Brassica napus HOM05D001177 ORTHO05D007091 2.7e-104 382.1 210 100.0
Sp2g16520 Schrenkiella parvula HOM05D001177 ORTHO05D001507 2.9e-61 239.2 209 63.6
Thhalv10003629m.g Eutrema salsugineum HOM05D001177 ORTHO05D001507 2.4e-60 236.1 221 64.3
A02p35380 Brassica napus HOM05D001177 ORTHO05D007091 3.5e-59 232.3 178 72.5
C09p60530 Brassica napus HOM05D001177 ORTHO05D007091 1.6e-56 223.4 224 66.1
BolC2t11472H Brassica oleracea HOM05D001177 ORTHO05D001507 6.9e-55 218.0 177 73.4
Carub.0005s0563 Capsella rubella HOM05D001177 ORTHO05D001507 2.0e-54 216.5 204 64.2
C02p54100 Brassica napus HOM05D001177 ORTHO05D001507 3.4e-54 215.7 176 72.7
AT3G27330 Arabidopsis thaliana HOM05D001177 ORTHO05D001507 9.3e-52 207.6 224 59.8
AL5G16650 Arabidopsis lyrata HOM05D001177 ORTHO05D001507 2.8e-48 196.1 203 60.6
C08p35970 Brassica napus HOM05D001177 ORTHO05D007091 1.8e-39 166.8 189 60.8
CARHR148650 Cardamine hirsuta HOM05D001177 ORTHO05D001507 4.0e-39 165.6 181 58.0
BcaC03g14536 Brassica carinata HOM05D001177 ORTHO05D007091 3.4e-38 162.5 76 100.0
Aa31LG2G5370 Aethionema arabicum HOM05D001177 ORTHO05D001507 2.5e-33 146.4 171 53.2
THA.LOC104805349 Tarenaya hassleriana HOM05D001177 ORTHO05D007091 2.0e-30 136.7 209 44.0
Gorai.006G037700 Gossypium raimondii HOM05D001177 ORTHO05D007091 6.1e-27 125.2 218 40.4
COL.COLO4_29271 Corchorus olitorius HOM05D001177 ORTHO05D007091 7.9e-27 124.8 232 39.7
GSVIVG01003965001 Vitis vinifera HOM05D001177 ORTHO05D001507 1.3e-26 124.0 166 45.2
Ca_06569_v3 Cicer arietinum L. HOM05D001177 ORTHO05D007091 1.8e-26 123.6 227 39.2
Lju41A46T90 Lonicera japonica HOM05D001177 ORTHO05D007091 1.8e-26 123.6 207 40.1
arahy.Tifrunner.gnm1.ann1.R689L2 Arachis hypogaea HOM05D001177 ORTHO05D007091 6.7e-26 121.7 197 42.1
vmacro05919 Vaccinium macrocarpon HOM05D001177 ORTHO05D007091 6.7e-26 121.7 208 40.9
Ah.02g130620 Amaranthus hybridus HOM05D001177 ORTHO05D007091 8.7e-26 121.3 176 45.5
Cc08_g11710 Coffea canephora HOM05D001177 ORTHO05D007091 1.5e-25 120.6 196 41.3
arahy.Tifrunner.gnm1.ann1.Q0SVNI Arachis hypogaea HOM05D001177 ORTHO05D007091 2.5e-25 119.8 238 38.2
EL10Ac6g13445 Beta vulgaris HOM05D001177 ORTHO05D007091 3.3e-25 119.4 195 41.5
Ciclev10017544m.g Citrus clementina HOM05D001177 ORTHO05D001507 3.3e-25 119.4 262 39.3
Hund24909 Selenicereus undatus HOM05D001177 ORTHO05D007091 3.3e-25 119.4 180 42.8
Eucgr.I01697 Eucalyptus grandis HOM05D001177 ORTHO05D001507 7.4e-25 118.2 177 42.4
Oeu048591.1 Olea europaea HOM05D001177 ORTHO05D007091 7.4e-25 118.2 215 40.9
Cpa.g.sc1097.2 Carica papaya HOM05D001177 ORTHO05D007091 9.7e-25 117.9 170 43.5
Gohir.A09G032700 Gossypium hirsutum HOM05D001177 ORTHO05D007091 1.3e-24 117.5 154 45.5
TPR.G9071 Trifolium pratense HOM05D001177 ORTHO05D007091 1.6e-24 117.1 233 38.2
CsaV3_3G027350 Cucumis sativus L. HOM05D001177 ORTHO05D007091 2.2e-24 116.7 228 36.8
Gohir.D11G069600 Gossypium hirsutum HOM05D001177 ORTHO05D007091 3.7e-24 115.9 198 43.9
Gorai.007G074400 Gossypium raimondii HOM05D001177 ORTHO05D007091 3.7e-24 115.9 198 43.9
TAR371G1081 Trochodendron aralioides HOM05D001177 ORTHO05D007091 3.7e-24 115.9 213 38.0
Dinv00599 Davidia involucrata HOM05D001177 ORTHO05D007091 6.3e-24 115.2 206 37.9
TWI12G0650 Tripterygium wilfordii HOM05D001177 ORTHO05D007091 8.2e-24 114.8 168 44.0
Gohir.A11G065300 Gossypium hirsutum HOM05D001177 ORTHO05D007091 1.1e-23 114.4 198 43.4
Medtr7g035445 Medicago truncatula HOM05D001177 ORTHO05D007091 1.1e-23 114.4 235 38.3
A01p04420 Brassica napus HOM05D066155 ORTHO05D007091 1.4e-23 114.0 85 81.2
A06p45910 Brassica napus HOM05D066155 ORTHO05D007091 1.4e-23 114.0 85 81.2
Duzib147G1186 Durio zibethinus HOM05D001177 ORTHO05D007091 1.4e-23 114.0 197 40.1
Actinidia36159 Actinidia chinensis HOM05D001177 ORTHO05D007091 3.1e-23 112.8 192 41.1
Thecc.04G027000 Theobroma cacao HOM05D001177 ORTHO05D007091 3.1e-23 112.8 197 39.1
Lj1g0014156 Lotus japonicus HOM05D001177 ORTHO05D007091 4.1e-23 112.5 205 40.5
Nn3g16573 Nelumbo nucifera HOM05D001177 ORTHO05D007091 4.1e-23 112.5 216 37.0
QL02p073037 Quercus lobata HOM05D001177 ORTHO05D007091 4.1e-23 112.5 259 39.0
QL02p073106 Quercus lobata HOM05D001177 ORTHO05D007091 4.1e-23 112.5 259 39.0
Sabra16G0217700 Salix brachista HOM05D001177 ORTHO05D007091 4.1e-23 112.5 269 35.7
CSS0005984 Camellia sinensis var. sinensis HOM05D001177 ORTHO05D007091 5.3e-23 112.1 208 40.9
CSS0031107 Camellia sinensis var. sinensis HOM05D001177 ORTHO05D007091 5.3e-23 112.1 208 40.9
ClCG05G013200 Citrullus lanatus HOM05D001177 ORTHO05D007091 5.3e-23 112.1 240 34.6
Rhsim10G0011600 Rhododendron simsii HOM05D001177 ORTHO05D007091 5.3e-23 112.1 243 37.9
DCAR_002963 Daucus carota HOM05D001177 ORTHO05D007091 6.9e-23 111.7 189 40.7
RcHm_v2.0_Chr2g0174111 Rosa chinensis HOM05D001177 ORTHO05D007091 6.9e-23 111.7 233 39.1
Nn4g22453 Nelumbo nucifera HOM05D001177 ORTHO05D007091 9.0e-23 111.3 230 36.5
Nitab4.5_0001863g0200 Nicotiana tabacum HOM05D001177 ORTHO05D007091 9.0e-23 111.3 208 37.5
Phvul.008G148200 Phaseolus vulgaris HOM05D001177 ORTHO05D007091 9.0e-23 111.3 165 43.0
PGR083G2095 Punica granatum HOM05D001177 ORTHO05D007091 9.0e-23 111.3 173 40.5
TAR446G0002 Trochodendron aralioides HOM05D001177 ORTHO05D007091 1.2e-22 110.9 163 44.2
Nitab4.5_0001031g0080 Nicotiana tabacum HOM05D001177 ORTHO05D007091 2.0e-22 110.2 208 38.5
CiPaw.04G032700 Carya illinoinensis HOM05D001177 ORTHO05D007091 3.4e-22 109.4 269 33.8
CDE07G0753 Ceratophyllum demersum HOM05D001177 ORTHO05D007091 3.4e-22 109.4 184 37.5
FAN02G2178 Fragaria x ananassa HOM05D001177 ORTHO05D007091 3.4e-22 109.4 234 37.2
Glyma.19G082000 Glycine max HOM05D001177 ORTHO05D007091 3.4e-22 109.4 167 43.1
Manes.01G014100 Manihot esculenta HOM05D001177 ORTHO05D007091 3.4e-22 109.4 209 40.2
FAN14G2882 Fragaria x ananassa HOM05D001177 ORTHO05D007091 4.5e-22 109.0 235 36.6
Glyma.16G063400 Glycine max HOM05D001177 ORTHO05D007091 4.5e-22 109.0 180 40.6
FAN09G0779 Fragaria x ananassa HOM05D001177 ORTHO05D007091 1.0e-21 107.8 232 36.2
FAN09G4850 Fragaria x ananassa HOM05D001177 ORTHO05D007091 1.0e-21 107.8 232 36.2
Psat3g169040 Pisum sativum HOM05D001177 ORTHO05D007091 1.0e-21 107.8 218 39.9
Sc03g0007010 Simmondsia chinensis HOM05D001177 ORTHO05D007091 1.0e-21 107.8 172 43.6
PGSC0003DMG400020230 Solanum tuberosum HOM05D001177 ORTHO05D007091 1.0e-21 107.8 207 38.6
FvH4_6g52470 Fragaria vesca HOM05D001177 ORTHO05D007091 1.3e-21 107.5 235 36.2
PSO017G0460 Papaver somniferum HOM05D001177 ORTHO05D007091 1.3e-21 107.5 190 40.0
Lalb_Chr14g0363031 Lupinus albus HOM05D001177 ORTHO05D007091 1.7e-21 107.1 243 36.6
MD09G1017800 Malus domestica HOM05D001177 ORTHO05D007091 1.7e-21 107.1 211 37.0
Peaxi162Scf00420g00254 Petunia axillaris HOM05D001177 ORTHO05D007091 1.7e-21 107.1 206 36.9
Sc03g0006890 Simmondsia chinensis HOM05D001177 ORTHO05D007091 3.8e-21 105.9 172 43.0
MELO3C014848.2 Cucumis melo HOM05D001177 ORTHO05D007091 5.0e-21 105.5 229 35.8
PSO063G4178 Papaver somniferum HOM05D001177 ORTHO05D007091 5.0e-21 105.5 180 38.9
Aqoxy5G03563 Aquilegia oxysepala HOM05D001177 ORTHO05D007091 8.5e-21 104.8 167 41.3
CANSAT64G1259 Cannabis sativa HOM05D001177 ORTHO05D007091 8.5e-21 104.8 221 37.1
Atru.chr6.2479 Acer truncatum HOM05D001177 ORTHO05D007091 1.1e-20 104.4 275 33.8
HanXRQChr09g0255621 Helianthus annuus HOM05D001177 ORTHO05D007091 1.1e-20 104.4 202 34.2
MD17G1018600 Malus domestica HOM05D001177 ORTHO05D007091 1.9e-20 103.6 199 37.2
Prupe.3G299100 Prunus persica HOM05D001177 ORTHO05D001507 1.9e-20 103.6 179 39.7
FAN05G3425 Fragaria x ananassa HOM05D001177 ORTHO05D007091 2.5e-20 103.2 245 35.9
SGA_v2.0_scaffold135G34937 Striga asiatica HOM05D001177 ORTHO05D007091 2.5e-20 103.2 224 35.3
MBI11_g40895_MAGBIO Magnolia biondii HOM05D001177 ORTHO05D007091 3.2e-20 102.8 116 47.4
Potri.001G336832 Populus trichocarpa HOM05D001177 ORTHO05D007091 3.2e-20 102.8 131 45.0
C08p08490 Brassica napus HOM05D000546 ORTHO05D000398 4.2e-20 102.4 47 100.0
Migut.H00054 Erythranthe guttata HOM05D001177 ORTHO05D007091 4.2e-20 102.4 213 36.2
Nitab4.5_0001544g0170 Nicotiana tabacum HOM05D001177 ORTHO05D007091 4.2e-20 102.4 199 38.7
Solyc02g093760.4 Solanum lycopersicum HOM05D001177 ORTHO05D007091 4.2e-20 102.4 204 38.7
ECA232G2553 Erigeron canadensis HOM05D001177 ORTHO05D007091 5.5e-20 102.1 213 33.3
Sopen02g038400 Solanum pennellii HOM05D001177 ORTHO05D007091 5.5e-20 102.1 183 38.8
Nn6g31539 Nelumbo nucifera HOM05D001177 ORTHO05D007091 1.2e-19 100.9 174 41.4
Sed0019906 Sechium edule HOM05D001177 ORTHO05D007091 2.1e-19 100.1 141 41.8
HPP92_004596 Vanilla planifolia HOM05D001177 ORTHO05D007091 3.6e-19 99.4 177 38.4
Duzib187G1086 Durio zibethinus HOM05D001177 ORTHO05D007091 4.6e-19 99.0 167 40.1
Lsat_1_v5_gn_4_183800 Lactuca sativa HOM05D001177 ORTHO05D007091 4.6e-19 99.0 143 41.3
Sed0005287 Sechium edule HOM05D001177 ORTHO05D007091 4.6e-19 99.0 171 38.0
Haze_14808 Corylus avellana HOM05D001177 ORTHO05D007091 6.1e-19 98.6 171 37.4
Zm00001eb111820 Zea mays HOM05D001177 ORTHO05D007091 6.1e-19 98.6 200 36.0
Zm00001eb331370 Zea mays HOM05D001177 ORTHO05D007091 1.4e-18 97.4 221 34.8
PSO384G2778 Papaver somniferum HOM05D001177 ORTHO05D007091 1.8e-18 97.1 99 49.5
PGSC0003DMG400006969 Solanum tuberosum HOM05D001177 ORTHO05D007091 3.0e-18 96.3 125 44.8
Nitab4.5_0005414g0040 Nicotiana tabacum HOM05D001177 ORTHO05D007091 6.7e-18 95.1 109 47.7
SHI03853 Sapria himalayana HOM05D001177 ORTHO05D007091 1.1e-17 94.4 204 35.3
Os12g0267900 Oryza sativa ssp. japonica HOM05D001177 ORTHO05D007091 2.0e-17 93.6 238 32.8
Gohir.D09G032700 Gossypium hirsutum HOM05D001177 ORTHO05D007091 3.3e-17 92.8 190 35.8
Solyc02g067970.4 Solanum lycopersicum HOM05D001177 ORTHO05D007091 7.4e-17 91.7 192 35.9
Sopen02g017100 Solanum pennellii HOM05D001177 ORTHO05D007091 9.7e-17 91.3 153 39.9
Cfa007285 Carpinus fangiana HOM05D001177 ORTHO05D007091 3.7e-16 89.4 161 36.6
ATR0824G077 Amborella trichopoda HOM05D001177 ORTHO05D007091 1.1e-15 87.8 211 32.7
Ca_11723_v3 Cicer arietinum L. HOM05D001177 ORTHO05D007091 1.8e-15 87.0 63 60.3
Thecc.04G025000 Theobroma cacao HOM05D001177 ORTHO05D007091 5.9e-14 82.0 87 48.3
C02p19860 Brassica napus HOM05D020524 ORTHO05D022043 7.7e-14 81.6 42 95.2
Peaxi162Scf00080g01722 Petunia axillaris HOM05D001177 ORTHO05D007091 1.3e-13 80.9 131 38.9
AUR62005578 Chenopodium quinoa HOM05D001177 ORTHO05D007091 1.7e-13 80.5 141 40.4
Medtr7g035455 Medicago truncatula HOM05D001177 ORTHO05D007091 1.7e-13 80.5 112 41.1
CBR_g51805 Chara braunii HOM05D001177 ORTHO05D007091 5.0e-13 79.0 87 47.1
ECA232G2835 Erigeron canadensis HOM05D003414 ORTHO05D003913 5.0e-13 79.0 96 44.8
SEGI_15562 Sequoiadendron giganteum HOM05D001177 ORTHO05D007091 6.5e-13 78.6 85 45.9
Nitab4.5_0005587g0090 Nicotiana tabacum HOM05D001177 ORTHO05D007091 2.5e-12 76.6 168 38.7
AUR62024152 Chenopodium quinoa HOM05D001177 ORTHO05D007091 3.2e-12 76.3 148 37.8
PSO339G1540 Papaver somniferum HOM05D001177 ORTHO05D007091 3.2e-12 76.3 266 29.7
Pp3c9_11850 Physcomitrium patens HOM05D001177 ORTHO05D007091 1.6e-11 73.9 131 35.1
Pp3c9_11853 Physcomitrium patens HOM05D001177 ORTHO05D007091 1.6e-11 73.9 131 35.1
unitig_21.g20485 Utricularia gibba HOM05D001177 ORTHO05D007091 5.1e-10 68.9 144 30.6
Mapoly0006s0009 Marchantia polymorpha HOM05D001177 ORTHO05D007091 2.0e-09 67.0 170 28.8
Dinv33388 Davidia involucrata HOM05D001177 ORTHO05D007091 4.4e-09 65.9 37 67.6
Manes.01G049405 Manihot esculenta HOM05D001177 ORTHO05D007091 5.7e-09 65.5 30 86.7
Manes.S095224 Manihot esculenta HOM05D001177 ORTHO05D007091 5.7e-09 65.5 30 86.7
Ca_03262_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.2e-08 63.5 53 50.9
Medtr1g093975 Medicago truncatula HOM05D001177 ORTHO05D007091 8.2e-08 61.6 93 33.3
Medtr1g094005 Medicago truncatula HOM05D001177 ORTHO05D007091 8.2e-08 61.6 93 33.3
Nitab4.5_0000040g0530 Nicotiana tabacum HOM05D001177 ORTHO05D007091 7.0e-07 58.5 193 31.1
Cre05.g247500 Chlamydomonas reinhardtii HOM05D001177 ORTHO05D007091 4.5e-06 55.8 81 35.8
Nitab4.5_0001544g0160 Nicotiana tabacum HOM05D001177 ORTHO05D007091 4.5e-06 55.8 68 45.6


User provided reference genes

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