Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p38070 Brassica napus HOM05D005022 ORTHO05D002200 3.1e-63 245.0 126 100.0
A06p40090 Brassica napus HOM05D005022 ORTHO05D002200 1.3e-53 213.0 124 93.5
BcaC06g33675 Brassica carinata HOM05D005022 ORTHO05D002200 7.0e-47 190.7 94 100.0
BolC7t44329H Brassica oleracea HOM05D005022 ORTHO05D002200 7.0e-47 190.7 94 100.0
A02p36420 Brassica napus HOM05D005022 ORTHO05D002200 4.0e-42 174.9 95 91.6
BraA02t08639Z Brassica rapa HOM05D005022 ORTHO05D002200 4.0e-42 174.9 95 91.6
BraA06t26924Z Brassica rapa HOM05D005022 ORTHO05D002200 4.0e-42 174.9 96 94.8
Thhalv10005146m.g Eutrema salsugineum HOM05D005022 ORTHO05D002200 4.0e-42 174.9 95 92.6
BcaB07g30093 Brassica carinata HOM05D005022 ORTHO05D002200 5.2e-42 174.5 95 91.6
BcaC03g17565 Brassica carinata HOM05D005022 ORTHO05D002200 8.9e-42 173.7 95 90.5
C02p55350 Brassica napus HOM05D005022 ORTHO05D002200 8.9e-42 173.7 95 90.5
BolC2t11592H Brassica oleracea HOM05D005022 ORTHO05D002200 8.9e-42 173.7 95 90.5
Sp2g17780 Schrenkiella parvula HOM05D005022 ORTHO05D002200 8.9e-42 173.7 95 91.6
BcaC06g30883 Brassica carinata HOM05D005022 ORTHO05D002200 1.2e-41 173.3 94 95.7
AL5G19080 Arabidopsis lyrata HOM05D005022 ORTHO05D002200 3.2e-39 165.2 96 89.6
CARHR152330 Cardamine hirsuta HOM05D005022 ORTHO05D002200 3.2e-39 165.2 97 88.7
Carub.0005s0790 Capsella rubella HOM05D005022 ORTHO05D002200 9.2e-39 163.7 96 88.5
AT3G29170 Arabidopsis thaliana HOM05D005022 ORTHO05D002200 1.6e-38 162.9 96 88.5
THA.LOC104823026 Tarenaya hassleriana HOM05D005022 ORTHO05D002200 2.3e-37 159.1 95 84.2
THA.LOC104823702 Tarenaya hassleriana HOM05D005022 ORTHO05D002200 1.8e-34 149.4 94 81.9
COL.COLO4_12232 Corchorus olitorius HOM05D005022 ORTHO05D002200 7.8e-30 134.0 94 69.1
Migut.K01301 Erythranthe guttata HOM05D005022 ORTHO05D002200 1.7e-29 132.9 94 70.2
Gohir.D11G074700 Gossypium hirsutum HOM05D005022 ORTHO05D002200 1.7e-29 132.9 94 73.4
CAN.G623.29 Capsicum annuum HOM05D005022 ORTHO05D002200 2.3e-29 132.5 94 69.1
Gohir.A11G070800 Gossypium hirsutum HOM05D005022 ORTHO05D002200 3.0e-29 132.1 94 73.4
Cpa.g.sc14.131 Carica papaya HOM05D005022 ORTHO05D002200 5.1e-29 131.3 94 68.1
Cc05_g15190 Coffea canephora HOM05D005022 ORTHO05D002200 5.1e-29 131.3 95 68.4
Solyc07g065740.3 Solanum lycopersicum HOM05D005022 ORTHO05D002200 5.1e-29 131.3 94 69.1
Sopen07g033950 Solanum pennellii HOM05D005022 ORTHO05D002200 5.1e-29 131.3 94 69.1
PGSC0003DMG400022162 Solanum tuberosum HOM05D005022 ORTHO05D002200 6.6e-29 131.0 94 68.1
Eucgr.I02005 Eucalyptus grandis HOM05D005022 ORTHO05D002200 1.1e-28 130.2 94 69.1
MSTRG.3339 Avicennia marina HOM05D005022 ORTHO05D002200 2.5e-28 129.0 94 67.0
unitig_748.g7266 Utricularia gibba HOM05D005022 ORTHO05D002200 2.5e-28 129.0 94 70.2
MSTRG.15466 Avicennia marina HOM05D005022 ORTHO05D002200 3.3e-28 128.6 94 66.0
CSS0002409 Camellia sinensis var. sinensis HOM05D005022 ORTHO05D002200 4.3e-28 128.3 94 69.1
Nitab4.5_0004583g0030 Nicotiana tabacum HOM05D005022 ORTHO05D002200 5.6e-28 127.9 94 68.1
Nitab4.5_0013922g0020 Nicotiana tabacum HOM05D005022 ORTHO05D002200 5.6e-28 127.9 94 68.1
QL02p084958 Quercus lobata HOM05D005022 ORTHO05D002200 5.6e-28 127.9 94 66.0
GSVIVG01011468001 Vitis vinifera HOM05D005022 ORTHO05D002200 7.3e-28 127.5 94 68.1
Gorai.007G080300 Gossypium raimondii HOM05D005022 ORTHO05D002200 9.6e-28 127.1 90 73.3
Oeu023719.1 Olea europaea HOM05D005022 ORTHO05D002200 1.2e-27 126.7 94 66.0
Ciclev10013833m.g Citrus clementina HOM05D005022 ORTHO05D002200 3.6e-27 125.2 94 64.9
Hma1.2p1_0325F.1_g125800 Hydrangea macrophylla HOM05D005022 ORTHO05D002200 4.7e-27 124.8 94 66.0
Rhsim10G0035600 Rhododendron simsii HOM05D005022 ORTHO05D002200 6.2e-27 124.4 94 67.0
arahy.Tifrunner.gnm1.ann1.72TST8 Arachis hypogaea HOM05D005022 ORTHO05D002200 8.1e-27 124.0 94 66.0
arahy.Tifrunner.gnm1.ann1.I9NK4S Arachis hypogaea HOM05D005022 ORTHO05D002200 8.1e-27 124.0 94 66.0
Duzib147G1375 Durio zibethinus HOM05D005022 ORTHO05D002200 8.1e-27 124.0 94 69.1
Peaxi162Scf00139g00112 Petunia axillaris HOM05D000001 ORTHO05D000003 8.1e-27 124.0 93 68.8
Sabra06G0037700 Salix brachista HOM05D005022 ORTHO05D002200 1.1e-26 123.6 94 64.9
vmacro16388 Vaccinium macrocarpon HOM05D005022 ORTHO05D002200 1.1e-26 123.6 94 64.9
Aa31LG2G4070 Aethionema arabicum HOM05D005022 ORTHO05D002200 1.4e-26 123.2 95 70.5
CiPaw.03G021600 Carya illinoinensis HOM05D005022 ORTHO05D002200 1.4e-26 123.2 94 66.0
Hund09378 Selenicereus undatus HOM05D005022 ORTHO05D002200 1.4e-26 123.2 98 67.3
Potri.006G053300 Populus trichocarpa HOM05D005022 ORTHO05D002200 1.8e-26 122.9 94 64.9
TAR629G0139 Trochodendron aralioides HOM05D005022 ORTHO05D002200 1.8e-26 122.9 94 67.0
Lsat_1_v5_gn_2_89360 Lactuca sativa HOM05D005022 ORTHO05D002200 2.4e-26 122.5 94 67.0
Sed0016737 Sechium edule HOM05D005022 ORTHO05D002200 2.4e-26 122.5 94 67.0
Thecc.04G088000 Theobroma cacao HOM05D005022 ORTHO05D002200 2.4e-26 122.5 94 68.1
Haze_14492 Corylus avellana HOM05D005022 ORTHO05D002200 3.1e-26 122.1 94 67.0
MELO3C022011.2 Cucumis melo HOM05D005022 ORTHO05D002200 3.1e-26 122.1 94 66.0
Cc07_g03690 Coffea canephora HOM05D005022 ORTHO05D002200 4.0e-26 121.7 94 67.0
Rhsim07G0089800 Rhododendron simsii HOM05D005022 ORTHO05D002200 4.0e-26 121.7 94 66.0
RcHm_v2.0_Chr2g0167041 Rosa chinensis HOM05D005022 ORTHO05D002200 6.8e-26 120.9 94 68.1
CiPaw.03G278100 Carya illinoinensis HOM05D005022 ORTHO05D002200 8.9e-26 120.6 94 64.9
Lalb_Chr15g0086431 Lupinus albus HOM05D005022 ORTHO05D002200 8.9e-26 120.6 94 66.0
SGA_v2.0_scaffold236G43759 Striga asiatica HOM05D005022 ORTHO05D002200 8.9e-26 120.6 94 61.7
ClCG09G017950 Citrullus lanatus HOM05D005022 ORTHO05D002200 1.5e-25 119.8 94 63.8
Dinv41801 Davidia involucrata HOM05D005022 ORTHO05D002200 1.5e-25 119.8 94 63.8
Manes.14G112300 Manihot esculenta HOM05D005022 ORTHO05D002200 1.5e-25 119.8 94 66.0
TWI60G0052 Tripterygium wilfordii HOM05D005022 ORTHO05D002200 1.5e-25 119.8 94 66.0
CsaV3_5G038280 Cucumis sativus L. HOM05D005022 ORTHO05D002200 3.4e-25 118.6 94 63.8
Lj6g0010384 Lotus japonicus HOM05D005022 ORTHO05D002200 3.4e-25 118.6 94 70.2
Phvul.006G171600 Phaseolus vulgaris HOM05D005022 ORTHO05D002200 3.4e-25 118.6 94 68.1
SGA_v2.0_scaffold1515G53975 Striga asiatica HOM05D005022 ORTHO05D002200 4.4e-25 118.2 94 63.8
Atru.chr3.2861 Acer truncatum HOM05D005022 ORTHO05D002200 5.8e-25 117.9 115 58.3
CANSAT64G2922 Cannabis sativa HOM05D005022 ORTHO05D002200 5.8e-25 117.9 95 65.3
FvH4_6g47840 Fragaria vesca HOM05D005022 ORTHO05D002200 5.8e-25 117.9 94 63.8
FAN05G3245 Fragaria x ananassa HOM05D005022 ORTHO05D002200 5.8e-25 117.9 94 63.8
FAN14G5329 Fragaria x ananassa HOM05D005022 ORTHO05D002200 5.8e-25 117.9 94 63.8
Glyma.15G086500 Glycine max HOM05D005022 ORTHO05D002200 5.8e-25 117.9 94 69.1
Medtr2g017920 Medicago truncatula HOM05D005022 ORTHO05D002200 5.8e-25 117.9 94 69.1
AUR62026682 Chenopodium quinoa HOM05D005022 ORTHO05D002200 7.6e-25 117.5 98 63.3
AUR62040591 Chenopodium quinoa HOM05D005022 ORTHO05D002200 7.6e-25 117.5 98 63.3
Lalb_Chr01g0010761 Lupinus albus HOM05D005022 ORTHO05D002200 7.6e-25 117.5 94 67.0
Hund02686 Selenicereus undatus HOM05D005022 ORTHO05D002200 7.6e-25 117.5 95 64.2
Sc11g0004910 Simmondsia chinensis HOM05D005022 ORTHO05D002200 9.9e-25 117.1 98 63.3
FAN09G0227 Fragaria x ananassa HOM05D005022 ORTHO05D002200 1.7e-24 116.3 94 62.8
MD17G1053800 Malus domestica HOM05D005022 ORTHO05D002200 1.7e-24 116.3 94 63.8
Ca_00478_v3 Cicer arietinum L. HOM05D005022 ORTHO05D002200 2.2e-24 115.9 94 68.1
Sed0010256 Sechium edule HOM05D005022 ORTHO05D002200 2.2e-24 115.9 94 63.8
Ah.02g113030 Amaranthus hybridus HOM05D005022 ORTHO05D002200 2.9e-24 115.5 99 60.6
Glyma.13G225600 Glycine max HOM05D005022 ORTHO05D002200 2.9e-24 115.5 90 68.9
PGR056G0006 Punica granatum HOM05D005022 ORTHO05D002200 3.8e-24 115.2 94 63.8
TPR.G4494 Trifolium pratense HOM05D005022 ORTHO05D002200 3.8e-24 115.2 94 66.0
EL10Ac5g10898 Beta vulgaris HOM05D005022 ORTHO05D002200 4.9e-24 114.8 103 60.2
Psat1g194000 Pisum sativum HOM05D005022 ORTHO05D002200 4.9e-24 114.8 94 67.0
TWI34G0511 Tripterygium wilfordii HOM05D005022 ORTHO05D002200 4.9e-24 114.8 94 61.7
TWI34G1044 Tripterygium wilfordii HOM05D005022 ORTHO05D002200 4.9e-24 114.8 94 61.7
HPP92_007847 Vanilla planifolia HOM05D005022 ORTHO05D002200 4.9e-24 114.8 94 64.9
MD09G1056300 Malus domestica HOM05D005022 ORTHO05D002200 6.4e-24 114.4 94 62.8
Manes.08G085000 Manihot esculenta HOM05D005022 ORTHO05D002200 6.4e-24 114.4 95 64.2
Zm00001eb020420 Zea mays HOM05D005022 ORTHO05D002200 6.4e-24 114.4 96 61.5
Phvul.002G129000 Phaseolus vulgaris HOM05D005022 ORTHO05D002200 8.4e-24 114.0 94 64.9
VMungo0540G0520 Vigna mungo HOM05D005022 ORTHO05D002200 8.4e-24 114.0 94 67.0
ECA238G3567 Erigeron canadensis HOM05D005022 ORTHO05D002200 1.4e-23 113.2 94 63.8
Prupe.3G262800 Prunus persica HOM05D005022 ORTHO05D002200 1.4e-23 113.2 94 62.8
PGR004G0139 Punica granatum HOM05D005022 ORTHO05D002200 1.4e-23 113.2 95 64.2
Actinidia26238 Actinidia chinensis HOM05D005022 ORTHO05D002200 1.9e-23 112.8 94 60.6
AUR62021768 Chenopodium quinoa HOM05D005022 ORTHO05D002200 1.9e-23 112.8 98 61.2
Lj2g0004380 Lotus japonicus HOM05D005022 ORTHO05D002200 2.4e-23 112.5 94 67.0
Lj3g0011454 Lotus japonicus HOM05D005022 ORTHO05D002200 2.4e-23 112.5 94 67.0
Manes.06G037100 Manihot esculenta HOM05D005022 ORTHO05D002200 2.4e-23 112.5 95 63.2
HanXRQChr17g0546151 Helianthus annuus HOM05D005022 ORTHO05D002200 5.4e-23 111.3 94 60.6
Lj3g0009973 Lotus japonicus HOM05D005022 ORTHO05D002200 7.1e-23 110.9 94 64.9
Aqoxy5G02989 Aquilegia oxysepala HOM05D005022 ORTHO05D002200 9.3e-23 110.5 94 62.8
Os12g0129000 Oryza sativa ssp. japonica HOM05D005022 ORTHO05D002200 1.2e-22 110.2 95 64.2
PSO063G1170 Papaver somniferum HOM05D005022 ORTHO05D002200 2.1e-22 109.4 94 61.7
PSO063G2328 Papaver somniferum HOM05D005022 ORTHO05D002200 2.1e-22 109.4 94 61.7
AUR62008331 Chenopodium quinoa HOM05D005022 ORTHO05D002200 7.8e-22 107.5 98 59.2
Atru.chr8.334 Acer truncatum HOM05D005022 ORTHO05D002200 1.3e-21 106.7 116 55.2
DCAR_011073 Daucus carota HOM05D005022 ORTHO05D002200 1.9e-20 102.8 94 58.5
DCAR_026919 Daucus carota HOM05D005022 ORTHO05D002200 3.3e-20 102.1 94 58.5
Lsat_1_v5_gn_3_99860 Lactuca sativa HOM05D005022 ORTHO05D002200 7.3e-20 100.9 95 54.7
CANSAT78G1165 Cannabis sativa HOM05D005022 ORTHO05D002200 2.1e-19 99.4 94 58.5
CDE02G1391 Ceratophyllum demersum HOM05D005022 ORTHO05D002200 2.1e-19 99.4 94 55.3
Sed0009283 Sechium edule HOM05D005022 ORTHO05D002200 3.1e-18 95.5 87 58.6
CSS0006095 Camellia sinensis var. sinensis HOM05D005022 ORTHO05D002200 5.3e-18 94.7 94 55.3
HanXRQChr15g0473111 Helianthus annuus HOM05D005022 ORTHO05D002200 5.3e-18 94.7 94 53.2
CAN.G27.34 Capsicum annuum HOM05D005022 ORTHO05D011077 1.9e-15 86.3 75 57.3
CBR_g61519 Chara braunii HOM05D005022 ORTHO05D002200 1.2e-14 83.6 97 51.5
SEGI_21990 Sequoiadendron giganteum HOM05D005022 ORTHO05D002200 7.9e-14 80.9 112 43.8
Potri.016G054301 Populus trichocarpa HOM05D005022 ORTHO05D002200 1.7e-13 79.7 74 58.1
Mapoly0001s0441 Marchantia polymorpha HOM05D005022 ORTHO05D002200 6.6e-13 77.8 102 50.0
Mapoly0059s0090 Marchantia polymorpha HOM05D005022 ORTHO05D002200 4.3e-12 75.1 94 47.9
Pp3c7_15070 Physcomitrium patens HOM05D005022 ORTHO05D002200 9.6e-12 73.9 52 71.2
Pp3c11_17600 Physcomitrium patens HOM05D005022 ORTHO05D002200 2.8e-11 72.4 105 43.8
SMO340G0185 Selaginella moellendorffii HOM05D005022 ORTHO05D002200 6.9e-10 67.8 99 40.4
Nn4g23286 Nelumbo nucifera HOM05D005022 ORTHO05D002200 1.2e-09 67.0 60 63.3
Pp3c18_10200 Physcomitrium patens HOM05D005022 ORTHO05D002200 2.6e-09 65.9 103 42.7


User provided reference genes

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