Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g33671 Brassica carinata HOM05D007012 ORTHO05D008882 1.8e-60 235.7 120 100.0
C07p38010 Brassica napus HOM05D007012 ORTHO05D008882 1.8e-60 235.7 120 100.0
BolC7t44322H Brassica oleracea HOM05D007012 ORTHO05D008882 1.8e-60 235.7 120 100.0
BcaC06g30880 Brassica carinata HOM05D007012 ORTHO05D008882 8.4e-58 226.9 120 96.7
A06p40130 Brassica napus HOM05D007012 ORTHO05D008882 8.4e-58 226.9 120 96.7
Thhalv10005148m.g Eutrema salsugineum HOM05D007012 ORTHO05D008882 5.5e-57 224.2 120 94.2
Sp2g17760 Schrenkiella parvula HOM05D007012 ORTHO05D008882 4.6e-56 221.1 120 93.3
AL5G19030 Arabidopsis lyrata HOM05D007012 ORTHO05D008882 1.1e-54 216.5 120 90.8
Carub.0005s0786 Capsella rubella HOM05D007012 ORTHO05D008882 2.8e-53 211.8 120 88.3
CARHR152280 Cardamine hirsuta HOM05D007012 ORTHO05D008882 8.2e-53 210.3 120 88.3
Aa31LG2G4090 Aethionema arabicum HOM05D007012 ORTHO05D008882 5.3e-52 207.6 120 86.7
THA.LOC104805486 Tarenaya hassleriana HOM05D007012 ORTHO05D008882 5.0e-50 201.1 117 86.3
BraA06t26928Z Brassica rapa HOM05D007012 ORTHO05D008882 1.9e-49 199.1 175 65.7
Sed0027179 Sechium edule HOM05D007012 ORTHO05D008882 9.7e-46 186.8 118 77.1
Atru.chr10.869 Acer truncatum HOM05D007012 ORTHO05D008882 4.8e-45 184.5 119 75.6
Gohir.A06G207700 Gossypium hirsutum HOM05D007012 ORTHO05D008882 1.8e-44 182.6 118 73.7
MELO3C023274.2 Cucumis melo HOM05D007012 ORTHO05D008882 4.1e-44 181.4 118 75.4
Cc09_g08050 Coffea canephora HOM05D007012 ORTHO05D008882 5.3e-44 181.0 119 73.1
Dinv35474 Davidia involucrata HOM05D007012 ORTHO05D008882 5.3e-44 181.0 119 72.3
vmacro03442 Vaccinium macrocarpon HOM05D007012 ORTHO05D008882 5.3e-44 181.0 119 72.3
ClCG02G000770 Citrullus lanatus HOM05D007012 ORTHO05D008882 9.1e-44 180.3 118 74.6
Gohir.D06G213600 Gossypium hirsutum HOM05D007012 ORTHO05D008882 1.5e-43 179.5 118 72.9
Gorai.010G252500 Gossypium raimondii HOM05D007012 ORTHO05D008882 1.5e-43 179.5 118 72.9
Rhsim05G0222100 Rhododendron simsii HOM05D007012 ORTHO05D008882 1.5e-43 179.5 119 73.1
Thecc.06G001300 Theobroma cacao HOM05D007012 ORTHO05D008882 1.5e-43 179.5 119 72.3
Manes.14G122800 Manihot esculenta HOM05D007012 ORTHO05D008882 2.6e-43 178.7 118 72.9
Hma1.2p1_0333F.1_g128270 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 5.9e-43 177.6 119 73.1
Potri.011G098200 Populus trichocarpa HOM05D007012 ORTHO05D008882 5.9e-43 177.6 117 73.5
Ciclev10017190m.g Citrus clementina HOM05D007012 ORTHO05D008882 7.7e-43 177.2 119 73.1
FvH4_3g10060 Fragaria vesca HOM05D007012 ORTHO05D008882 7.7e-43 177.2 117 72.6
QL05p061226 Quercus lobata HOM05D007012 ORTHO05D008882 1.0e-42 176.8 118 72.0
Actinidia03306 Actinidia chinensis HOM05D007012 ORTHO05D008882 1.3e-42 176.4 119 71.4
CiPaw.09G115600 Carya illinoinensis HOM05D007012 ORTHO05D008882 1.3e-42 176.4 119 73.9
CSS0014344 Camellia sinensis var. sinensis HOM05D007012 ORTHO05D008882 2.2e-42 175.6 119 70.6
FAN25G0029 Fragaria x ananassa HOM05D007012 ORTHO05D008882 6.5e-42 174.1 117 71.8
Solyc02g069820.3 Solanum lycopersicum HOM05D007012 ORTHO05D008882 8.5e-42 173.7 119 68.9
PGSC0003DMG400021126 Solanum tuberosum HOM05D007012 ORTHO05D008882 8.5e-42 173.7 118 69.5
MD10G1253600 Malus domestica HOM05D007012 ORTHO05D008882 1.1e-41 173.3 117 72.6
SGA_v2.0_scaffold1G00245 Striga asiatica HOM05D007012 ORTHO05D008882 1.1e-41 173.3 118 72.0
Sopen02g018980 Solanum pennellii HOM05D007012 ORTHO05D008882 1.9e-41 172.6 119 68.9
CAN.G1520.3 Capsicum annuum HOM05D007012 ORTHO05D008882 2.5e-41 172.2 119 69.7
FAN21G1693 Fragaria x ananassa HOM05D007012 ORTHO05D008882 3.2e-41 171.8 117 70.9
Nitab4.5_0001225g0050 Nicotiana tabacum HOM05D007012 ORTHO05D008882 3.2e-41 171.8 119 68.1
RcHm_v2.0_Chr5g0015911 Rosa chinensis HOM05D007012 ORTHO05D008882 3.2e-41 171.8 117 70.1
GSVIVG01021626001 Vitis vinifera HOM05D007012 ORTHO05D008882 3.2e-41 171.8 119 69.7
ECA248G1541 Erigeron canadensis HOM05D007012 ORTHO05D008882 4.2e-41 171.4 117 72.6
Glyma.05G166500 Glycine max HOM05D007012 ORTHO05D008882 4.2e-41 171.4 112 70.5
Nitab4.5_0004615g0020 Nicotiana tabacum HOM05D007012 ORTHO05D008882 4.2e-41 171.4 116 69.0
Peaxi162Scf00100g01517 Petunia axillaris HOM05D007012 ORTHO05D008882 4.2e-41 171.4 119 68.9
Prupe.4G090000 Prunus persica HOM05D007012 ORTHO05D008882 4.2e-41 171.4 119 69.7
TWI73G0699 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 4.2e-41 171.4 119 69.7
CANSAT11G0200 Cannabis sativa HOM05D007012 ORTHO05D008882 5.5e-41 171.0 119 68.9
Sabra11G0090900 Salix brachista HOM05D007012 ORTHO05D008882 5.5e-41 171.0 117 72.6
Lsat_1_v5_gn_1_117760 Lactuca sativa HOM05D007012 ORTHO05D008882 7.2e-41 170.6 119 68.1
Migut.M00621 Erythranthe guttata HOM05D007012 ORTHO05D008882 9.4e-41 170.2 120 67.5
Sabra11G0084700 Salix brachista HOM05D007012 ORTHO05D008882 1.6e-40 169.5 117 71.8
unitig_748.g7806 Utricularia gibba HOM05D007012 ORTHO05D008882 2.1e-40 169.1 118 69.5
PGR031G1292 Punica granatum HOM05D007012 ORTHO05D008882 2.7e-40 168.7 119 70.6
Migut.M01890 Erythranthe guttata HOM05D007012 ORTHO05D008882 3.6e-40 168.3 120 66.7
CiPaw.10G085800 Carya illinoinensis HOM05D007012 ORTHO05D008882 4.7e-40 167.9 119 70.6
Lalb_Chr12g0204651 Lupinus albus HOM05D007012 ORTHO05D008882 4.7e-40 167.9 119 66.4
Migut.M01889 Erythranthe guttata HOM05D007012 ORTHO05D008882 6.1e-40 167.5 120 67.5
TAR629G2694 Trochodendron aralioides HOM05D007012 ORTHO05D008882 7.9e-40 167.2 119 67.2
HanXRQChr15g0468791 Helianthus annuus HOM05D007012 ORTHO05D008882 1.0e-39 166.8 119 68.9
PSO675G5463 Papaver somniferum HOM05D007012 ORTHO05D008882 1.0e-39 166.8 119 68.9
Eucgr.K01942 Eucalyptus grandis HOM05D007012 ORTHO05D008882 2.3e-39 165.6 119 68.1
TWI09G0010 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 2.3e-39 165.6 118 69.5
arahy.Tifrunner.gnm1.ann1.80D497 Arachis hypogaea HOM05D007012 ORTHO05D008882 3.9e-39 164.9 119 65.5
MSTRG.7536 Avicennia marina HOM05D007012 ORTHO05D008882 5.1e-39 164.5 118 66.9
arahy.Tifrunner.gnm1.ann1.HAVC5G Arachis hypogaea HOM05D007012 ORTHO05D008882 6.7e-39 164.1 117 65.8
MD05G1273800 Malus domestica HOM05D007012 ORTHO05D008882 6.7e-39 164.1 117 68.4
Medtr8g088380 Medicago truncatula HOM05D007012 ORTHO05D008882 6.7e-39 164.1 118 64.4
PSO541G1654 Papaver somniferum HOM05D007012 ORTHO05D008882 6.7e-39 164.1 119 67.2
Lj4g0006275 Lotus japonicus HOM05D007012 ORTHO05D008882 1.1e-38 163.3 116 64.7
AT3G29130 Arabidopsis thaliana HOM05D007012 ORTHO05D008882 2.0e-38 162.5 87 92.0
AUR62005835 Chenopodium quinoa HOM05D007012 ORTHO05D008882 2.6e-38 162.2 114 70.2
AUR62032828 Chenopodium quinoa HOM05D007012 ORTHO05D008882 2.6e-38 162.2 114 70.2
TPR.G6804 Trifolium pratense HOM05D007012 ORTHO05D008882 2.6e-38 162.2 118 63.6
HPP92_000966 Vanilla planifolia HOM05D007012 ORTHO05D008882 4.4e-38 161.4 117 65.0
Psat7g066160 Pisum sativum HOM05D007012 ORTHO05D008882 9.7e-38 160.2 118 63.6
Phvul.002G246900 Phaseolus vulgaris HOM05D007012 ORTHO05D008882 1.3e-37 159.8 113 67.3
QL05p061674 Quercus lobata HOM05D007012 ORTHO05D008882 1.7e-37 159.5 150 56.0
Ah.02g129420 Amaranthus hybridus HOM05D007012 ORTHO05D008882 1.8e-36 156.0 114 68.4
Sc24g0001360 Simmondsia chinensis HOM05D007012 ORTHO05D008882 7.0e-36 154.1 113 67.3
EL10Ac6g13254 Beta vulgaris HOM05D007012 ORTHO05D008882 9.1e-36 153.7 114 67.5
Sed0002894 Sechium edule HOM05D007012 ORTHO05D008882 1.5e-35 152.9 101 71.3
Hund20768 Selenicereus undatus HOM05D007012 ORTHO05D008882 2.6e-35 152.1 114 65.8
SalBow8G4607 Salvia bowleyana HOM05D007012 ORTHO05D008882 2.9e-34 148.7 134 55.2
Os03g0640400 Oryza sativa ssp. japonica HOM05D007012 ORTHO05D008882 1.2e-32 143.3 111 60.4
Zm00001eb218740 Zea mays HOM05D007012 ORTHO05D008882 2.1e-32 142.5 123 56.1
CDE08G0050 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 6.1e-32 141.0 107 62.6
Migut.M00618 Erythranthe guttata HOM05D007012 ORTHO05D008882 8.0e-32 140.6 108 63.0
SEGI_30962 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 2.0e-30 136.0 115 57.4
CsaV3_2G017990 Cucumis sativus L. HOM05D007012 ORTHO05D008882 9.1e-28 127.1 84 73.8
FAN11G2674 Fragaria x ananassa HOM05D007012 ORTHO05D008882 1.2e-27 126.7 85 74.1
FAN16G3160 Fragaria x ananassa HOM05D007012 ORTHO05D008882 1.2e-27 126.7 85 74.1
Cfa000822 Carpinus fangiana HOM05D007012 ORTHO05D008882 2.0e-27 125.9 85 72.9
Aqoxy1G01570 Aquilegia oxysepala HOM05D007012 ORTHO05D008882 5.9e-27 124.4 88 67.0
Pp3c17_18250 Physcomitrium patens HOM05D007012 ORTHO05D008882 2.2e-26 122.5 116 55.2
Hma1.2p1_0333F.1_g128260 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 2.9e-26 122.1 84 70.2
Oeu034103.1 Olea europaea HOM05D007012 ORTHO05D008882 1.5e-25 119.8 85 65.9
VMungo0251G0322 Vigna mungo HOM05D007012 ORTHO05D008882 2.5e-25 119.0 85 64.7
AagrBONN_evm.TU.Sc2ySwM_368.2441 Anthoceros agrestis HOM05D007012 ORTHO05D008882 5.5e-25 117.9 113 52.2
Mapoly0001s0437 Marchantia polymorpha HOM05D007012 ORTHO05D008882 7.2e-25 117.5 109 50.5
CDE08G0396 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 3.6e-24 115.2 94 58.5
Haze_05817 Corylus avellana HOM05D007012 ORTHO05D008882 1.0e-23 113.6 88 63.6
CBR_g52649 Chara braunii HOM05D007012 ORTHO05D008882 3.0e-23 112.1 114 46.5
SEGI_05812 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 3.0e-23 112.1 81 65.4
ATR0165G051 Amborella trichopoda HOM05D007012 ORTHO05D008882 1.3e-21 106.7 81 61.7
Migut.M00617 Erythranthe guttata HOM05D007012 ORTHO05D008882 8.3e-21 104.0 117 46.2
AagrBONN_evm.TU.Sc2ySwM_117.2140 Anthoceros agrestis HOM05D007012 ORTHO05D008882 1.4e-20 103.2 85 58.8
Glyma.08G124500 Glycine max HOM05D007012 ORTHO05D008882 4.0e-15 85.1 54 70.4
Nn3g20226 Nelumbo nucifera HOM05D007012 ORTHO05D008882 1.8e-07 59.7 124 35.5
THA.LOC104805965 Tarenaya hassleriana HOM05D000199 ORTHO05D000550 3.0e-07 58.9 32 90.6


User provided reference genes

Program Settings