Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 4212.1 2101 100.0
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 4212.1 2101 100.0
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 4051.1 2101 96.6
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 4051.1 2101 96.6
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 3994.1 2101 96.0
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 3786.5 2126 89.5
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 3668.6 2124 86.5
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 3592.4 2125 85.4
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 3572.7 2125 84.9
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 3555.8 2125 84.6
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 3448.3 2169 81.1
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 3261.1 1965 84.1
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2993.0 2161 71.5
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2551.9 2232 60.7
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2532.7 2230 60.9
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2522.3 2231 60.1
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2506.1 2233 59.7
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2488.0 2214 60.3
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2475.7 2225 60.0
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2468.7 2230 59.1
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2466.0 2246 59.6
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2444.5 2233 59.0
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2443.7 2233 58.8
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2442.5 2233 59.7
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2429.1 2208 59.1
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2427.5 2250 58.8
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2407.1 2201 58.9
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2404.0 2248 58.2
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2400.5 2238 58.4
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2399.4 2241 58.4
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2398.2 2231 58.1
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2388.6 2201 58.3
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2380.1 2217 57.6
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2375.5 2230 58.6
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2374.7 2237 57.7
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2374.4 2251 58.0
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2370.1 2222 57.0
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2359.3 2237 57.7
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2352.0 2239 57.0
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2351.6 2210 56.9
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2347.8 2237 57.5
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2345.1 2246 57.3
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2305.4 2240 55.8
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2303.9 2225 55.6
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2299.6 2223 55.5
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2298.1 2163 56.5
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2297.7 2158 57.6
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2297.3 2238 56.0
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2296.9 2228 56.0
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2296.2 2209 56.0
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2292.7 2232 56.9
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2285.0 2230 55.3
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2280.4 2223 55.9
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2270.4 2155 56.9
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2267.3 2218 55.9
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2266.9 2229 55.8
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2265.3 2211 55.1
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2264.6 2218 55.5
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2263.8 2224 55.2
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2261.9 2213 55.1
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2260.7 2212 55.4
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2259.2 2208 54.7
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2255.7 2225 55.3
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2253.4 2223 54.8
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2249.6 2213 54.9
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2249.6 2234 55.7
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2243.4 2211 55.0
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2242.2 2225 54.7
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2241.8 2240 54.6
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2239.5 2205 55.0
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2239.5 2214 55.6
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2229.5 2231 54.2
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2228.8 2216 55.2
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2209.1 2257 54.3
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2201.4 2189 54.8
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2200.6 2265 53.5
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2195.2 2227 54.0
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2191.4 2211 53.7
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2187.1 2154 56.5
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2096.2 1825 60.5
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2049.2 1814 60.6
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2046.2 1876 58.5
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2016.9 1831 59.4
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 1979.9 2205 50.4
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1966.8 1708 61.2
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 1966.0 2167 50.2
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 1952.6 2325 48.0
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1936.0 2303 49.5
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1775.4 1418 66.4
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1710.7 2178 47.6
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1671.8 2397 41.7
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 1513.8 812 92.9
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1497.6 1682 50.2
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1422.9 2344 39.0
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1375.1 2355 38.0
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1353.6 1342 55.7
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1330.1 2179 38.0
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 1310.4 929 75.5
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1250.7 2135 38.4
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1183.3 1136 56.7
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1172.1 1016 60.1
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1144.0 1194 53.2
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1120.9 941 63.2
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 1.6e-292 1010.7 1399 43.9
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.7e-286 990.7 1051 53.2
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 1.6e-252 877.9 2453 29.7
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 1.1e-242 845.1 784 58.2
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 2.3e-235 820.8 990 49.7
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 6.3e-209 733.0 1351 37.6
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 2.0e-194 684.9 726 53.0
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 9.3e-152 543.1 2549 25.7
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 1.6e-119 436.0 445 52.1
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 7.5e-109 400.6 375 57.3
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 4.9e-92 344.7 278 66.9
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 3.6e-71 275.4 312 50.3
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.6e-61 242.7 304 47.4
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 1.4e-59 236.9 701 28.4
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 3.2e-59 235.7 296 47.0
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 1.3e-52 213.8 231 51.9
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 1.0e-49 204.1 178 62.9
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 1.5e-48 200.3 214 51.4
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 2.0e-45 189.9 252 43.7
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 1.9e-35 156.8 138 58.0
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 4.2e-35 155.6 477 28.1
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 2.1e-34 153.3 99 77.8
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 2.6e-29 136.3 136 53.7
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.7e-28 133.7 207 42.0
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 1.1e-27 131.0 253 33.6
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 1.3e-25 124.0 121 55.4
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 3.7e-23 115.9 93 61.3
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 2.4e-22 113.2 99 61.6
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 5.0e-12 79.0 102 41.2
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 5.5e-11 75.5 425 21.9


User provided reference genes

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