Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 9.3e-215 750.0 391 100.0
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 9.3e-215 750.0 391 100.0
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 1.2e-142 510.4 509 62.3
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 1.3e-139 500.4 511 62.2
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 5.4e-138 495.0 513 61.6
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 5.4e-138 495.0 513 61.6
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 7.1e-138 494.6 511 61.4
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 2.1e-137 493.0 511 61.1
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 2.7e-137 492.7 517 60.5
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 3.5e-137 492.3 321 84.7
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 6.0e-137 491.5 513 61.2
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 3.3e-127 459.1 509 59.5
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 8.1e-126 454.5 509 57.0
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 5.3e-125 451.8 512 56.2
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 2.0e-124 449.9 509 56.2
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 3.5e-121 439.1 518 54.8
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 1.2e-116 424.1 509 54.4
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 2.4e-109 399.8 516 50.8
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 9.0e-93 344.7 521 43.4
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.4e-88 330.9 515 43.1
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 3.9e-88 329.3 519 42.6
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 1.1e-87 327.8 521 42.4
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 2.2e-86 323.6 515 42.1
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 3.7e-86 322.8 520 42.7
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 5.3e-85 318.9 521 42.2
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 5.3e-85 318.9 522 41.8
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 5.3e-85 318.9 521 41.1
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 4.5e-84 315.8 523 41.1
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 3.8e-83 312.8 510 40.0
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 6.5e-83 312.0 510 39.8
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.1e-82 311.2 517 41.8
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 2.5e-82 310.1 438 45.9
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 2.5e-82 310.1 518 40.3
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 2.5e-82 310.1 516 41.5
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 3.2e-82 309.7 523 40.7
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 7.2e-82 308.5 513 40.4
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 3.6e-81 306.2 510 40.2
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.0e-80 304.7 515 39.8
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.8e-80 303.9 515 39.6
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.3e-80 303.5 515 39.4
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 3.9e-80 302.8 518 40.2
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 5.1e-80 302.4 521 39.2
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 6.7e-80 302.0 515 39.4
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 3.3e-79 299.7 524 38.9
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 5.7e-79 298.9 522 39.3
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 5.7e-79 298.9 520 40.4
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 5.7e-79 298.9 522 39.1
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 1.3e-78 297.7 510 38.6
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 1.7e-78 297.4 518 40.0
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 2.8e-78 296.6 489 41.9
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 2.4e-77 293.5 504 40.5
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 2.4e-77 293.5 512 38.5
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 3.1e-77 293.1 553 38.3
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 4.1e-77 292.7 518 39.0
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 9.1e-77 291.6 223 71.7
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 1.6e-76 290.8 510 38.4
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 3.5e-76 289.7 508 39.0
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 7.7e-76 288.5 223 71.3
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 1.0e-75 288.1 512 38.7
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 1.0e-75 288.1 497 40.6
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 1.0e-75 288.1 518 38.4
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.7e-75 287.3 517 39.5
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 8.5e-75 285.0 506 39.5
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 8.5e-75 285.0 523 38.4
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 1.5e-74 284.3 519 36.2
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 2.5e-74 283.5 511 38.4
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 4.2e-74 282.7 523 37.9
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 4.2e-74 282.7 514 38.5
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 9.4e-74 281.6 520 37.7
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 2.7e-73 280.0 528 37.3
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 3.6e-73 279.6 425 43.5
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 6.1e-73 278.9 516 37.4
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 8.0e-73 278.5 499 38.7
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.4e-72 277.7 514 38.1
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 3.0e-72 276.6 438 41.1
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 3.0e-72 276.6 530 37.0
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 1.1e-71 274.6 495 39.6
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 2.2e-70 270.4 490 40.4
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 4.8e-70 269.2 493 38.9
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.1e-69 268.1 413 41.9
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.8e-69 267.3 385 43.4
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 2.4e-69 266.9 413 41.6
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 5.9e-68 262.3 489 37.8
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 5.9e-68 262.3 509 37.7
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 5.9e-68 262.3 526 36.9
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 3.8e-67 259.6 553 35.4
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 5.0e-67 259.2 525 35.8
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 4.2e-66 256.1 489 37.6
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 5.5e-66 255.8 450 39.6
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 2.3e-64 250.4 557 33.9
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 2.0e-63 247.3 498 36.1
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 2.6e-63 246.9 436 37.8
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 1.3e-62 244.6 514 33.7
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 3.1e-61 240.0 517 34.2
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 7.0e-61 238.8 348 44.0
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 7.7e-60 235.3 514 32.9
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 7.7e-60 235.3 521 36.5
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 1.3e-59 234.6 520 34.6
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 7.2e-58 228.8 515 34.0
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 1.4e-56 224.6 510 32.7
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 8.8e-56 221.9 468 36.5
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 3.0e-48 196.8 511 30.5
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 8.3e-46 188.7 379 34.8
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 6.6e-43 179.1 150 72.0
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 3.6e-41 173.3 483 31.9
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 3.1e-40 170.2 322 39.1
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 1.0e-35 155.2 269 40.5
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.6e-31 140.6 234 38.9
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.3e-30 138.3 433 28.9
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 3.6e-25 120.2 276 34.4
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 1.1e-24 118.6 151 42.4
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 7.8e-20 102.4 333 25.8
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 2.3e-19 100.9 105 67.6
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 2.3e-19 100.9 525 23.0
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 9.6e-18 95.5 131 48.1
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 2.1e-17 94.4 104 64.4
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 2.1e-17 94.4 104 64.4
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 4.0e-16 90.1 376 24.7
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.7e-14 84.7 143 36.4
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 7.8e-12 75.9 187 28.9
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 1.0e-11 75.5 155 31.0
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 6.6e-11 72.8 145 37.2
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 5.6e-10 69.7 182 31.9
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 5.6e-10 69.7 254 28.7
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.4e-08 65.1 92 47.8
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 5.3e-08 63.2 139 32.4


User provided reference genes

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