Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-163 580.1 354 100.0
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 2.4e-100 369.8 200 99.5
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 1.2e-83 314.3 213 90.6
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-83 313.9 217 96.8
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-81 307.4 213 84.0
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 6.1e-80 302.0 183 87.4
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 8.0e-80 301.6 183 87.4
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-76 291.2 185 94.6
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 1.8e-76 290.4 183 92.3
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 8.5e-74 281.6 204 86.8
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 8.8e-71 271.6 151 96.0
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 3.3e-70 269.6 175 83.4
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 1.7e-69 267.3 175 92.0
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 4.8e-69 265.8 175 90.9
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 4.8e-69 265.8 175 90.9
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-68 264.2 174 82.8
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 1.4e-68 264.2 204 83.3
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 1.8e-68 263.8 204 83.3
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 3.1e-68 263.1 204 83.3
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 7.0e-68 261.9 204 82.8
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 1.2e-67 261.2 174 81.0
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.3e-66 257.7 175 87.4
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 3.8e-66 256.1 204 81.9
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 3.8e-66 256.1 204 81.9
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 7.2e-65 251.9 174 77.0
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 9.4e-65 251.5 174 76.4
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 1.4e-63 247.7 174 77.0
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 2.2e-61 240.4 168 77.4
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 2.8e-61 240.0 145 100.0
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 4.8e-61 239.2 221 71.5
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 7.0e-60 235.3 204 82.8
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 7.7e-59 231.9 193 67.9
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 1.7e-58 230.7 204 72.5
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-57 227.6 151 83.4
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 4.2e-57 226.1 192 65.1
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 4.2e-57 226.1 221 57.9
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 5.5e-57 225.7 190 74.2
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 2.8e-56 223.4 194 72.2
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 4.7e-56 222.6 194 72.2
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.0e-55 221.5 204 65.2
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.0e-55 221.5 204 65.2
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 1.8e-55 220.7 196 69.9
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.3e-55 220.3 193 71.5
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.3e-55 220.3 193 71.5
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.3e-55 220.3 193 71.5
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 2.3e-55 220.3 221 57.5
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 3.0e-55 219.9 204 68.1
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 4.0e-55 219.5 176 76.1
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 1.2e-54 218.0 176 75.0
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-54 218.0 194 71.1
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 2.6e-54 216.9 204 68.1
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.4e-54 216.5 176 73.9
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 4.4e-54 216.1 215 66.5
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 4.4e-54 216.1 193 61.1
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 4.4e-54 216.1 193 71.0
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 1.3e-53 214.5 221 62.4
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 1.7e-53 214.2 191 71.2
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 2.2e-53 213.8 139 79.1
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.2e-53 213.8 176 73.3
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 3.7e-53 213.0 193 60.1
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 3.7e-53 213.0 182 67.0
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 4.9e-53 212.6 176 72.2
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 6.3e-53 212.2 174 64.4
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 6.3e-53 212.2 191 70.2
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 8.3e-53 211.8 174 68.4
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-52 211.5 173 76.3
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.1e-52 211.5 174 72.4
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-52 211.1 173 83.8
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 1.8e-52 210.7 206 65.0
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 1.8e-52 210.7 191 70.2
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 1.8e-52 210.7 204 64.2
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 2.4e-52 210.3 176 63.6
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 3.1e-52 209.9 233 57.5
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 5.4e-52 209.1 176 63.1
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 7.0e-52 208.8 221 61.1
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 7.0e-52 208.8 174 74.1
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 9.2e-52 208.4 175 72.6
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.2e-51 208.0 174 73.0
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.6e-51 207.6 171 73.7
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 2.0e-51 207.2 223 60.5
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 2.7e-51 206.8 191 70.7
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 4.5e-51 206.1 201 67.2
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 4.5e-51 206.1 221 60.6
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 5.9e-51 205.7 204 74.5
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.0e-50 204.9 174 71.8
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.0e-50 204.9 174 71.8
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 2.3e-50 203.8 204 64.2
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 2.3e-50 203.8 176 73.3
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 2.9e-50 203.4 174 70.7
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 2.9e-50 203.4 204 67.2
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 2.9e-50 203.4 204 66.7
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 3.8e-50 203.0 195 67.2
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 8.6e-50 201.8 221 59.7
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 8.6e-50 201.8 221 58.8
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 8.6e-50 201.8 224 69.2
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 1.1e-49 201.4 211 64.0
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 1.1e-49 201.4 199 67.3
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 1.5e-49 201.1 208 63.5
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 1.9e-49 200.7 174 72.4
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.9e-49 200.7 176 71.0
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 2.5e-49 200.3 221 55.7
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 5.6e-49 199.1 221 60.2
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 9.5e-49 198.4 193 65.3
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 1.6e-48 197.6 175 64.6
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 2.8e-48 196.8 204 62.7
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 2.8e-48 196.8 204 64.7
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 3.6e-48 196.4 222 54.5
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 4.7e-48 196.1 194 66.0
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 6.1e-48 195.7 221 53.4
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 6.1e-48 195.7 225 63.1
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 8.0e-48 195.3 198 63.1
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 4.0e-47 193.0 174 63.2
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 1.2e-46 191.4 194 62.9
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 2.0e-46 190.7 222 60.8
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 2.6e-46 190.3 174 63.2
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 2.6e-46 190.3 221 61.1
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 9.8e-46 188.3 193 55.4
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 9.8e-46 188.3 193 55.4
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 2.2e-45 187.2 174 67.2
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 1.6e-43 181.0 188 61.7
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 1.7e-42 177.6 172 64.5
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 3.0e-42 176.8 139 77.0
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 1.1e-41 174.9 204 51.0
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 1.5e-41 174.5 191 53.9
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 4.7e-40 169.5 258 43.4
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 8.0e-40 168.7 213 46.5
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 5.8e-38 162.5 114 92.1
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-36 158.3 222 48.2
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 2.1e-35 154.1 174 50.0
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.7e-35 153.7 143 65.0
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 5.1e-34 149.4 141 58.9
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 4.3e-33 146.4 109 69.7
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 7.3e-33 145.6 108 90.7
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.6e-32 144.4 176 48.3
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 6.2e-32 142.5 177 45.2
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 8.1e-32 142.1 197 51.3
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 1.2e-30 138.3 175 46.9
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.6e-30 137.1 140 55.0
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 2.6e-30 137.1 202 45.0
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 7.5e-30 135.6 180 51.7
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 2.2e-29 134.0 156 53.2
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 2.2e-29 134.0 105 62.9
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 2.1e-27 127.5 115 72.2
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 1.7e-26 124.4 138 50.0
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 1.2e-24 118.2 179 48.0
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.1e-24 117.5 110 72.7
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 6.2e-24 115.9 159 52.2
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 2.6e-22 110.5 103 54.4
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.6e-19 101.3 104 50.0
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.1e-18 96.3 101 58.4
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.1e-18 96.3 101 58.4
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.5e-17 94.0 101 56.4
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 1.4e-15 88.2 134 41.0
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.4e-14 83.2 69 65.2
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.4e-12 77.4 70 61.4
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 7.1e-12 75.9 70 62.9
C03p68800 Brassica napus HOM05D004175 ORTHO05D004664 6.0e-11 72.8 56 64.3
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.0e-10 72.0 70 58.6
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 1.3e-10 71.6 141 36.9
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.7e-10 71.2 68 58.8
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.5e-09 67.4 63 58.7
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 1.3e-08 65.1 81 50.6
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.0e-07 60.1 57 77.2
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.6e-06 57.4 57 77.2


User provided reference genes

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