Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p36630 Brassica napus HOM05D005478 ORTHO05D006426 4.6e-92 341.3 181 100.0
BolC7t44179H Brassica oleracea HOM05D005478 ORTHO05D006426 3.4e-87 325.1 181 95.6
BcaC06g33809 Brassica carinata HOM05D005478 ORTHO05D006426 4.5e-87 324.7 181 95.6
A06p41110 Brassica napus HOM05D005478 ORTHO05D006426 1.7e-81 306.2 180 92.8
BraA06t27034Z Brassica rapa HOM05D005478 ORTHO05D006426 1.7e-81 306.2 180 92.8
BcaC06g30982 Brassica carinata HOM05D005478 ORTHO05D006426 9.4e-69 263.8 183 82.0
Sp2g16690 Schrenkiella parvula HOM05D005478 ORTHO05D006426 9.1e-64 247.3 181 76.2
BraA09t35982Z Brassica rapa HOM05D005478 ORTHO05D006426 1.2e-52 210.3 179 67.0
BcaB04g19441 Brassica carinata HOM05D005478 ORTHO05D006426 2.1e-52 209.5 179 68.7
AT3G27520 Arabidopsis thaliana HOM05D005478 ORTHO05D006426 2.7e-52 209.1 190 62.1
A09p03440 Brassica napus HOM05D005478 ORTHO05D006426 3.6e-52 208.8 179 66.5
AL5G16940 Arabidopsis lyrata HOM05D005478 ORTHO05D006426 1.0e-51 207.2 191 61.3
Thhalv10004961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 5.2e-51 204.9 184 66.8
Carub.0005s0595 Capsella rubella HOM05D005478 ORTHO05D006426 1.5e-50 203.4 187 62.6
Aa31LG2G5140 Aethionema arabicum HOM05D005478 ORTHO05D006426 1.2e-47 193.7 196 58.2
BcaC04g23900 Brassica carinata HOM05D005478 ORTHO05D006426 2.9e-46 189.1 178 62.9
C09p03650 Brassica napus HOM05D005478 ORTHO05D006426 2.9e-46 189.1 178 62.9
BolC9t53284H Brassica oleracea HOM05D005478 ORTHO05D006426 5.5e-45 184.9 179 62.0
CARHR148890 Cardamine hirsuta HOM05D005478 ORTHO05D006426 1.0e-43 180.6 176 58.5
THA.LOC104825319 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 1.5e-42 176.8 177 54.2
Thhalv10027961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 1.0e-38 164.1 179 52.5
Cpa.g.sc108.77 Carica papaya HOM05D005478 ORTHO05D006426 4.9e-33 145.2 181 47.0
COL.COLO4_30424 Corchorus olitorius HOM05D005478 ORTHO05D006426 3.9e-30 135.6 183 42.1
QL02p074001 Quercus lobata HOM05D005478 ORTHO05D006426 5.0e-30 135.2 178 44.4
Duzib160G0719 Durio zibethinus HOM05D005478 ORTHO05D006426 8.6e-30 134.4 179 41.9
Duzib235G1061 Durio zibethinus HOM05D005478 ORTHO05D006426 1.1e-29 134.0 180 43.9
CiPaw.04G029700 Carya illinoinensis HOM05D005478 ORTHO05D006426 4.3e-29 132.1 181 47.5
Prupe.3G293900 Prunus persica HOM05D005478 ORTHO05D006426 5.6e-29 131.7 182 43.4
Manes.17G111100 Manihot esculenta HOM05D005478 ORTHO05D006426 9.5e-29 131.0 179 45.8
THA.LOC104825211 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 1.2e-28 130.6 134 56.7
Lalb_Chr22g0360721 Lupinus albus HOM05D005478 ORTHO05D006426 1.6e-28 130.2 180 47.2
Hma1.2p1_0818F.1_g223270 Hydrangea macrophylla HOM05D005478 ORTHO05D006426 2.1e-28 129.8 176 44.3
TWI56G0849 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 4.7e-28 128.6 178 43.8
TWI36G1604 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 1.8e-27 126.7 178 41.6
GSVIVG01032384001 Vitis vinifera HOM05D005478 ORTHO05D006426 2.3e-27 126.3 178 44.9
CiPaw.03G045600 Carya illinoinensis HOM05D005478 ORTHO05D006426 4.0e-27 125.6 178 42.1
Sabra16G0222600 Salix brachista HOM05D005478 ORTHO05D006426 6.8e-27 124.8 179 44.7
MSTRG.15534 Avicennia marina HOM05D005478 ORTHO05D006426 1.2e-26 124.0 175 45.7
Potri.001G343200 Populus trichocarpa HOM05D005478 ORTHO05D006426 2.0e-26 123.2 179 42.5
Actinidia36124 Actinidia chinensis HOM05D005478 ORTHO05D006426 4.4e-26 122.1 183 44.3
ClCG10G013780 Citrullus lanatus HOM05D005478 ORTHO05D006426 7.5e-26 121.3 182 41.8
MELO3C026588.2 Cucumis melo HOM05D005478 ORTHO05D006426 7.5e-26 121.3 187 38.5
CsaV3_3G042880 Cucumis sativus L. HOM05D005478 ORTHO05D006426 7.5e-26 121.3 187 40.1
TWI12G0237 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 9.8e-26 120.9 179 43.6
VMungo0464G1533 Vigna mungo HOM05D005478 ORTHO05D006426 1.3e-25 120.6 182 41.8
Ciclev10016916m.g Citrus clementina HOM05D005478 ORTHO05D006426 1.7e-25 120.2 178 41.6
Cfa007338 Carpinus fangiana HOM05D005478 ORTHO05D006426 1.1e-24 117.5 179 41.3
Sc07g0003180 Simmondsia chinensis HOM05D005478 ORTHO05D006426 1.4e-24 117.1 177 42.4
Medtr6g004420 Medicago truncatula HOM05D005478 ORTHO05D006426 2.4e-24 116.3 178 41.0
Duzib192G0894 Durio zibethinus HOM05D005478 ORTHO05D006426 3.2e-24 115.9 181 37.6
MSTRG.3284 Avicennia marina HOM05D005478 ORTHO05D006426 1.2e-23 114.0 175 40.6
Thecc.06G091700 Theobroma cacao HOM05D005478 ORTHO05D006426 1.2e-23 114.0 182 36.8
Sed0022021 Sechium edule HOM05D005478 ORTHO05D006426 1.6e-23 113.6 179 42.5
Actinidia18441 Actinidia chinensis HOM05D005478 ORTHO05D006426 2.1e-23 113.2 180 41.7
CANSAT64G0255 Cannabis sativa HOM05D005478 ORTHO05D006426 4.6e-23 112.1 182 39.6
AUR62041940 Chenopodium quinoa HOM05D005478 ORTHO05D006426 6.0e-23 111.7 183 42.1
Rhsim10G0014600 Rhododendron simsii HOM05D005478 ORTHO05D006426 6.0e-23 111.7 178 41.6
Haze_14759 Corylus avellana HOM05D005478 ORTHO05D006426 7.8e-23 111.3 181 40.3
Migut.K01412 Erythranthe guttata HOM05D005478 ORTHO05D006426 2.3e-22 109.8 176 40.3
Gohir.A09G082300 Gossypium hirsutum HOM05D005478 ORTHO05D006426 5.1e-22 108.6 179 36.9
DCAR_011260 Daucus carota HOM05D005478 ORTHO05D006426 6.6e-22 108.2 179 39.1
Glyma.05G002400 Glycine max HOM05D005478 ORTHO05D006426 6.6e-22 108.2 174 40.8
AUR62028419 Chenopodium quinoa HOM05D005478 ORTHO05D006426 1.1e-21 107.5 181 39.8
Lalb_Chr24g0403571 Lupinus albus HOM05D005478 ORTHO05D006426 1.1e-21 107.5 184 39.7
PGR142G0633 Punica granatum HOM05D005478 ORTHO05D006426 1.1e-21 107.5 181 39.2
Gohir.D09G082100 Gossypium hirsutum HOM05D005478 ORTHO05D006426 1.5e-21 107.1 179 36.9
Atru.chr6.2431 Acer truncatum HOM05D005478 ORTHO05D006426 1.9e-21 106.7 180 41.1
Gorai.006G097900 Gossypium raimondii HOM05D005478 ORTHO05D006426 1.9e-21 106.7 176 36.9
FAN05G2721 Fragaria x ananassa HOM05D005478 ORTHO05D006426 3.3e-21 105.9 181 40.9
Hund15527 Selenicereus undatus HOM05D005478 ORTHO05D006426 3.3e-21 105.9 183 38.8
FAN02G1690 Fragaria x ananassa HOM05D005478 ORTHO05D006426 4.3e-21 105.5 180 40.6
Lsat_1_v5_gn_0_18280 Lactuca sativa HOM05D005478 ORTHO05D006426 5.6e-21 105.1 178 40.4
Oeu033728.1 Olea europaea HOM05D005478 ORTHO05D006426 9.5e-21 104.4 175 40.0
SGA_v2.0_scaffold47G17517 Striga asiatica HOM05D005478 ORTHO05D006426 9.5e-21 104.4 176 36.4
Actinidia05981 Actinidia chinensis HOM05D005478 ORTHO05D006426 1.6e-20 103.6 178 39.3
MD09G1022900 Malus domestica HOM05D005478 ORTHO05D006426 1.6e-20 103.6 184 37.5
Ca_04142_v3 Cicer arietinum L. HOM05D005478 ORTHO05D006426 2.8e-20 102.8 179 38.0
TPR.G31952 Trifolium pratense HOM05D005478 ORTHO05D006426 3.6e-20 102.4 179 38.5
FvH4_6g51790 Fragaria vesca HOM05D005478 ORTHO05D006426 6.2e-20 101.7 181 39.2
unitig_88.g27693 Utricularia gibba HOM05D000631 ORTHO05D000524 1.1e-19 100.9 181 35.9
TAR371G0105 Trochodendron aralioides HOM05D005478 ORTHO05D006426 2.3e-19 99.8 179 37.4
FAN14G4849 Fragaria x ananassa HOM05D005478 ORTHO05D006426 3.1e-19 99.4 181 38.7
FAN09G1593 Fragaria x ananassa HOM05D005478 ORTHO05D006426 4.0e-19 99.0 181 38.7
Solyc02g093450.3 Solanum lycopersicum HOM05D005478 ORTHO05D006426 5.2e-19 98.6 179 35.8
Sopen02g038220 Solanum pennellii HOM05D005478 ORTHO05D006426 6.8e-19 98.2 179 35.8
PGSC0003DMG400012636 Solanum tuberosum HOM05D005478 ORTHO05D006426 6.8e-19 98.2 179 34.1
Psat1g053440 Pisum sativum HOM05D005478 ORTHO05D006426 2.0e-18 96.7 173 39.3
vmacro05877 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 5.8e-18 95.1 210 33.8
RcHm_v2.0_Chr2g0173291 Rosa chinensis HOM05D005478 ORTHO05D006426 7.5e-18 94.7 139 43.2
arahy.Tifrunner.gnm1.ann1.47572L Arachis hypogaea HOM05D005478 ORTHO05D006426 9.9e-18 94.4 179 38.5
Phvul.004G004600 Phaseolus vulgaris HOM05D005478 ORTHO05D006426 1.3e-17 94.0 184 34.2
Peaxi162Scf00700g00430 Petunia axillaris HOM05D005478 ORTHO05D006426 2.2e-17 93.2 167 35.9
TAR629G3442 Trochodendron aralioides HOM05D005478 ORTHO05D006426 3.7e-17 92.4 174 34.5
Glyma.19G002600 Glycine max HOM05D005478 ORTHO05D006426 1.4e-16 90.5 172 36.6
ATR0824G160 Amborella trichopoda HOM05D005478 ORTHO05D006426 1.9e-16 90.1 175 34.9
MD17G1022200 Malus domestica HOM05D005478 ORTHO05D006426 2.4e-16 89.7 183 35.0
HPP92_006182 Vanilla planifolia HOM05D005478 ORTHO05D006426 4.1e-16 89.0 178 35.4
Eucgr.I01730 Eucalyptus grandis HOM05D005478 ORTHO05D006426 7.1e-16 88.2 187 34.8
CSS0007505 Camellia sinensis var. sinensis HOM05D005478 ORTHO05D006426 1.2e-15 87.4 180 34.4
Oeu048609.1 Olea europaea HOM05D005478 ORTHO05D006426 1.6e-15 87.0 176 36.4
Lj2g0025845 Lotus japonicus HOM05D005478 ORTHO05D006426 2.7e-15 86.3 175 34.3
arahy.Tifrunner.gnm1.ann1.WAXE9D Arachis hypogaea HOM05D005478 ORTHO05D006426 4.6e-15 85.5 203 35.5
CDE09G0806 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 3.9e-14 82.4 177 32.2
PSO478G1356 Papaver somniferum HOM05D005478 ORTHO05D006426 2.5e-13 79.7 183 33.3
CDE02G4674 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 4.3e-13 79.0 177 31.6
Aqoxy5G03740 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 5.6e-13 78.6 176 30.1
Nn3g16686 Nelumbo nucifera HOM05D005478 ORTHO05D006426 5.6e-13 78.6 174 33.3
HanXRQChr07g0199031 Helianthus annuus HOM05D005478 ORTHO05D006426 2.1e-12 76.6 179 31.3
PSO017G4510 Papaver somniferum HOM05D005478 ORTHO05D006426 2.1e-12 76.6 182 34.1
SGA_v2.0_scaffold30G12408 Striga asiatica HOM05D005478 ORTHO05D006426 3.6e-12 75.9 180 31.1
HanXRQChr14g0451171 Helianthus annuus HOM05D005478 ORTHO05D006426 1.1e-11 74.3 179 31.8
PSO063G0871 Papaver somniferum HOM05D005478 ORTHO05D006426 2.4e-11 73.2 183 30.6
Lsat_1_v5_gn_2_91160 Lactuca sativa HOM05D005478 ORTHO05D006426 4.0e-11 72.4 179 33.0
Ah.02g128220 Amaranthus hybridus HOM05D005478 ORTHO05D006426 5.2e-11 72.0 185 30.3
PSO754G0087 Papaver somniferum HOM05D005478 ORTHO05D006426 2.0e-10 70.1 183 29.0
vmacro18294 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 2.0e-10 70.1 212 29.2
ECA238G3024 Erigeron canadensis HOM05D005478 ORTHO05D006426 3.4e-10 69.3 179 27.9
Aqoxy1G02464 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 4.9e-09 65.5 161 29.2
MBI14_g36718_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 1.9e-08 63.5 176 31.8
Gohir.D05G130900 Gossypium hirsutum HOM05D005478 ORTHO05D006426 2.4e-08 63.2 108 35.2
SEGI_00200 Sequoiadendron giganteum HOM05D005478 ORTHO05D006426 4.2e-08 62.4 163 29.4
Dinv33426 Davidia involucrata HOM05D005478 ORTHO05D006426 4.6e-07 58.9 54 57.4


User provided reference genes

Program Settings