Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 0.0e+00 1130.9 568 100.0
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 1.5e-309 1065.4 578 93.9
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 3.4e-306 1054.3 568 94.4
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 4.9e-305 1050.4 568 94.4
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 2.4e-304 1048.1 570 92.5
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 2.1e-300 1035.0 568 92.1
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 1.9e-285 985.3 572 85.8
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 1.6e-284 982.2 571 85.1
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 1.4e-283 979.2 568 85.2
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 1.5e-282 975.7 568 84.9
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 1.7e-281 972.2 569 85.1
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 7.6e-242 840.5 601 71.4
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.5e-240 835.5 575 72.3
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.2e-226 790.0 584 68.7
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 2.2e-209 732.6 386 89.4
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 2.6e-205 719.2 570 62.3
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.3e-201 706.8 575 61.2
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 2.2e-201 706.1 570 62.1
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 1.5e-200 703.4 585 60.9
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 8.0e-199 697.6 569 60.8
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.0e-198 697.2 569 60.6
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 3.0e-198 695.7 577 60.8
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 4.0e-198 695.3 570 60.0
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 3.4e-197 692.2 565 60.4
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 4.4e-197 691.8 566 60.6
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 5.7e-197 691.4 572 60.5
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.3e-196 690.3 574 61.1
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 2.2e-196 689.5 589 57.9
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 2.8e-196 689.1 586 58.9
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 3.7e-196 688.7 567 59.6
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 3.1e-195 685.6 569 60.1
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 1.6e-194 683.3 572 59.4
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 4.5e-194 681.8 576 59.7
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 1.3e-193 680.2 581 59.0
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 1.7e-193 679.9 573 59.7
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.7e-193 679.9 589 58.1
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 2.9e-193 679.1 567 59.4
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 2.9e-193 679.1 601 57.2
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 3.8e-193 678.7 564 59.2
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 2.5e-192 676.0 569 59.6
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 3.3e-192 675.6 566 60.8
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 9.5e-192 674.1 575 58.6
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 1.6e-191 673.3 565 59.8
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 1.6e-191 673.3 571 59.2
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.6e-191 673.3 490 66.1
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 4.7e-191 671.8 574 59.6
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 8.0e-191 671.0 577 59.1
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 8.0e-191 671.0 567 59.4
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 1.8e-190 669.8 526 62.9
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.8e-190 669.8 574 59.4
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.3e-190 669.5 574 59.6
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 5.2e-190 668.3 548 60.9
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 3.4e-189 665.6 575 58.3
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 7.5e-189 664.5 567 58.9
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 1.3e-188 663.7 579 57.5
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 3.7e-188 662.1 578 58.8
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 8.3e-188 661.0 568 58.1
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 8.3e-188 661.0 574 58.7
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 1.2e-186 657.1 567 57.3
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 4.5e-186 655.2 569 57.6
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 5.9e-186 654.8 574 56.3
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 7.8e-186 654.4 564 57.6
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 1.3e-185 653.7 566 59.0
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 5.6e-184 648.3 567 58.6
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 2.1e-183 646.4 573 58.8
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 5.2e-182 641.7 559 57.8
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 2.0e-181 639.8 567 56.4
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 2.6e-181 639.4 617 54.1
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 5.8e-181 638.3 566 55.8
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 9.8e-181 637.5 567 57.5
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 9.8e-181 637.5 567 56.8
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 9.2e-179 630.9 590 54.9
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 1.6e-178 630.2 568 57.7
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 2.0e-178 629.8 588 55.3
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 7.8e-178 627.9 485 62.7
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 1.3e-177 627.1 583 55.6
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 2.3e-177 626.3 566 55.8
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 3.0e-177 625.9 587 54.3
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 1.1e-171 607.4 492 60.2
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 1.9e-171 606.7 476 61.6
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 1.2e-170 604.0 534 57.3
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 4.6e-170 602.1 494 59.3
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 2.3e-169 599.7 568 53.7
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.5e-168 597.0 460 61.1
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 2.1e-167 593.2 499 58.5
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 5.2e-166 588.6 570 53.9
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 2.0e-165 586.6 633 49.3
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.9e-164 582.0 544 55.7
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 5.1e-161 572.0 502 54.8
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 8.1e-159 564.7 497 55.7
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 1.2e-157 560.8 493 55.8
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 9.9e-157 557.8 573 52.0
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 5.4e-155 552.0 457 62.1
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.9e-148 529.6 465 58.7
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 1.1e-147 527.7 389 63.5
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 6.6e-145 518.5 583 47.3
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 2.5e-144 516.5 369 64.2
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 6.0e-138 495.4 406 60.6
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 6.7e-137 491.9 577 47.0
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 5.6e-136 488.8 346 65.0
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 1.6e-135 487.3 348 64.9
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 1.6e-135 487.3 448 56.0
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 3.5e-130 469.5 497 51.1
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 1.8e-126 457.2 344 63.4
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 7.1e-123 445.3 460 46.7
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 6.0e-122 442.2 556 45.3
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 1.1e-115 421.4 491 46.4
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 7.2e-115 418.7 348 57.5
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 2.2e-111 407.1 323 59.8
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 4.1e-110 402.9 326 59.5
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 9.1e-110 401.7 267 73.4
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 3.4e-109 399.8 323 60.4
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 4.5e-109 399.4 517 41.6
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.0e-108 398.3 481 47.2
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.0e-105 388.3 494 43.1
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 2.3e-105 387.1 389 53.7
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 1.8e-102 377.5 302 59.3
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 2.4e-102 377.1 302 58.9
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 3.2e-91 340.1 326 56.1
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 7.5e-88 328.9 216 71.8
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 4.2e-83 313.2 246 60.6
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.5e-83 312.8 264 58.0
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 8.9e-73 278.9 486 33.5
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 4.5e-69 266.5 243 53.1
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.0e-61 241.1 261 49.8
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 3.1e-57 227.3 146 73.3
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.5e-56 224.9 250 48.8
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.1e-51 208.8 161 62.1
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.6e-50 204.9 137 67.9
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.6e-50 204.9 192 50.5
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 3.1e-33 147.5 170 41.2
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 5.3e-33 146.7 162 48.1
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 3.8e-31 140.6 204 42.2
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.8e-31 140.6 188 45.7
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 6.4e-31 139.8 187 44.9
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 2.4e-30 137.9 161 51.6
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 1.3e-28 132.1 137 48.9
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 3.0e-28 131.0 92 68.5
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.5e-27 128.6 150 43.3
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 1.6e-26 125.2 99 65.7
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 4.0e-25 120.6 84 67.9
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 5.4e-22 110.2 135 45.9
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 8.2e-10 69.7 71 43.7
CSS0040735 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 2.9e-07 61.2 111 38.7


User provided reference genes

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