Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p35930 Brassica napus HOM05D000088 ORTHO05D002723 5.2e-78 294.3 144 100.0
BolC7t44110H Brassica oleracea HOM05D000088 ORTHO05D002723 5.2e-78 294.3 144 100.0
C02p29060 Brassica napus HOM05D000088 ORTHO05D002723 2.6e-77 292.0 144 99.3
BcaC03g15297 Brassica carinata HOM05D009754 ORTHO05D002723 9.7e-77 290.0 143 98.6
BolC9t57605H Brassica oleracea HOM05D000088 ORTHO05D002723 1.7e-73 279.3 144 95.8
C09p56740 Brassica napus HOM05D000088 ORTHO05D002723 2.5e-72 275.4 144 93.8
BolC9t58530H Brassica oleracea HOM05D000088 ORTHO05D002723 2.5e-72 275.4 144 93.8
BcaC04g24216 Brassica carinata HOM05D000088 ORTHO05D002723 9.4e-72 273.5 143 93.0
BcaNung01370 Brassica carinata HOM05D000088 ORTHO05D002723 2.3e-65 252.3 200 68.0
BcaC05g25296 Brassica carinata HOM05D000088 ORTHO05D002723 2.0e-58 229.2 199 64.3
C05p11760 Brassica napus HOM05D000088 ORTHO05D002723 2.0e-58 229.2 199 64.3
BraA06t24186Z Brassica rapa HOM05D000088 ORTHO05D002723 4.5e-58 228.0 199 63.8
BolC5t29922H Brassica oleracea HOM05D000088 ORTHO05D002723 1.0e-57 226.9 199 63.8
A06p10000 Brassica napus HOM05D000088 ORTHO05D002723 5.0e-57 224.6 199 63.3
Thhalv10007646m.g Eutrema salsugineum HOM05D000088 ORTHO05D002723 8.0e-55 217.2 207 59.9
CARHR014370 Cardamine hirsuta HOM05D000088 ORTHO05D002723 2.0e-53 212.6 203 59.6
AT1G14000 Arabidopsis thaliana HOM05D000088 ORTHO05D002723 3.4e-53 211.8 203 59.1
Carub.0001s1369 Capsella rubella HOM05D000088 ORTHO05D002723 3.4e-53 211.8 204 59.3
AL1G25840 Arabidopsis lyrata HOM05D000088 ORTHO05D002723 7.5e-53 210.7 203 58.6
BcaB08g34354 Brassica carinata HOM05D000088 ORTHO05D002723 7.5e-53 210.7 207 59.9
Sp1g12360 Schrenkiella parvula HOM05D000088 ORTHO05D002723 2.2e-52 209.1 207 58.0
A09p62570 Brassica napus HOM05D000088 ORTHO05D002723 3.2e-51 205.3 203 59.6
THA.LOC104801810 Tarenaya hassleriana HOM05D000088 ORTHO05D002723 3.2e-51 205.3 204 58.3
BcaB08g34352 Brassica carinata HOM05D000088 ORTHO05D002723 7.0e-51 204.1 201 58.7
BcaB08g34353 Brassica carinata HOM05D000088 ORTHO05D002723 7.0e-51 204.1 201 58.7
C08p46130 Brassica napus HOM05D000088 ORTHO05D002723 7.0e-51 204.1 201 58.7
BolC8t52163H Brassica oleracea HOM05D000088 ORTHO05D002723 7.0e-51 204.1 201 58.7
THA.LOC104805177 Tarenaya hassleriana HOM05D000088 ORTHO05D002723 1.2e-47 193.4 206 55.8
Aa31LG1G1030 Aethionema arabicum HOM05D000088 ORTHO05D002723 1.6e-47 193.0 201 56.2
BraA09t41620Z Brassica rapa HOM05D000088 ORTHO05D002723 2.8e-47 192.2 232 51.7
Dinv34091 Davidia involucrata HOM05D000088 ORTHO05D002723 1.4e-46 189.9 198 55.6
Cfa008933 Carpinus fangiana HOM05D000088 ORTHO05D002723 4.0e-46 188.3 199 52.8
Ciclev10031585m.g Citrus clementina HOM05D000088 ORTHO05D002723 4.0e-46 188.3 200 54.5
GSVIVG01003214001 Vitis vinifera HOM05D000088 ORTHO05D002723 4.0e-46 188.3 196 54.1
Atru.chr11.1723 Acer truncatum HOM05D000088 ORTHO05D002723 1.2e-45 186.8 202 53.5
Sed0006999 Sechium edule HOM05D000088 ORTHO05D002723 2.0e-45 186.0 188 55.3
Sed0015795 Sechium edule HOM05D000088 ORTHO05D002723 5.8e-45 184.5 199 53.8
Cpa.g.sc1.62 Carica papaya HOM05D000088 ORTHO05D002723 9.8e-45 183.7 201 54.2
Lj6A784T66 Lonicera japonica HOM05D000088 ORTHO05D002723 9.8e-45 183.7 196 54.1
Manes.01G033000 Manihot esculenta HOM05D000088 ORTHO05D002723 2.2e-44 182.6 199 53.3
TAR622G0409 Trochodendron aralioides HOM05D000088 ORTHO05D002723 1.1e-43 180.3 206 51.0
Duzib268G1625 Durio zibethinus HOM05D000088 ORTHO05D002723 1.4e-43 179.9 202 52.5
TWI75G0144 Tripterygium wilfordii HOM05D000088 ORTHO05D002723 1.4e-43 179.9 199 51.8
TAR374G0898 Trochodendron aralioides HOM05D000088 ORTHO05D002723 1.4e-43 179.9 200 53.0
PGR102G1758 Punica granatum HOM05D000088 ORTHO05D002723 2.4e-43 179.1 177 55.9
Duzib251G0440 Durio zibethinus HOM05D000088 ORTHO05D002723 4.1e-43 178.3 202 52.0
Gohir.D02G127300 Gossypium hirsutum HOM05D000088 ORTHO05D002723 5.4e-43 177.9 194 51.5
Gorai.005G142900 Gossypium raimondii HOM05D000088 ORTHO05D002723 5.4e-43 177.9 194 51.5
Thecc.02G340000 Theobroma cacao HOM05D000088 ORTHO05D002723 5.4e-43 177.9 196 53.1
CsaV3_5G033030 Cucumis sativus L. HOM05D000088 ORTHO05D002723 7.0e-43 177.6 171 57.3
Gohir.A03G102400 Gossypium hirsutum HOM05D000088 ORTHO05D002723 9.2e-43 177.2 194 51.5
Nn4g23266 Nelumbo nucifera HOM05D000088 ORTHO05D002723 9.2e-43 177.2 210 50.0
Sc04g0007890 Simmondsia chinensis HOM05D000088 ORTHO05D002723 9.2e-43 177.2 182 53.3
Haze_11962 Corylus avellana HOM05D000088 ORTHO05D002723 1.2e-42 176.8 212 48.6
Hund25210 Selenicereus undatus HOM05D000088 ORTHO05D002723 1.2e-42 176.8 200 52.0
ClCG05G024010 Citrullus lanatus HOM05D000088 ORTHO05D002723 1.6e-42 176.4 171 56.1
Lj3A1033G51 Lonicera japonica HOM05D000088 ORTHO05D002723 1.6e-42 176.4 166 56.0
Manes.05G105800 Manihot esculenta HOM05D000088 ORTHO05D002723 1.6e-42 176.4 177 54.8
Potri.010G164500 Populus trichocarpa HOM05D000088 ORTHO05D002723 1.6e-42 176.4 204 52.9
MELO3C012125.2 Cucumis melo HOM05D000088 ORTHO05D002723 2.1e-42 176.0 171 56.7
Prupe.1G279200 Prunus persica HOM05D000088 ORTHO05D002723 2.1e-42 176.0 199 52.3
Gohir.A12G163500 Gossypium hirsutum HOM05D000088 ORTHO05D002723 2.7e-42 175.6 202 51.0
Lsat_1_v5_gn_8_48780 Lactuca sativa HOM05D000088 ORTHO05D002723 2.7e-42 175.6 199 49.7
EL10Ac6g13259 Beta vulgaris HOM05D000088 ORTHO05D002723 4.6e-42 174.9 205 49.8
Gohir.D12G166500 Gossypium hirsutum HOM05D000088 ORTHO05D002723 6.0e-42 174.5 202 50.5
Gorai.008G179300 Gossypium raimondii HOM05D000088 ORTHO05D002723 6.0e-42 174.5 202 50.5
Rhsim12G0132900 Rhododendron simsii HOM05D000088 ORTHO05D002723 7.8e-42 174.1 199 50.8
Sabra08G0068200 Salix brachista HOM05D000088 ORTHO05D002723 7.8e-42 174.1 203 50.7
Lalb_Chr05g0220221 Lupinus albus HOM05D000088 ORTHO05D002723 1.0e-41 173.7 186 51.6
Hma1.2p1_0354F.1_g133840 Hydrangea macrophylla HOM05D000088 ORTHO05D002723 1.3e-41 173.3 173 54.9
MD16G1067500 Malus domestica HOM05D000088 ORTHO05D002723 1.3e-41 173.3 199 51.8
COL.COLO4_27980 Corchorus olitorius HOM05D000088 ORTHO05D002723 1.7e-41 172.9 203 50.7
SGA_v2.0_scaffold389G50546 Striga asiatica HOM05D000088 ORTHO05D002723 2.3e-41 172.6 197 51.3
RcHm_v2.0_Chr4g0439171 Rosa chinensis HOM05D000088 ORTHO05D002723 3.9e-41 171.8 199 50.3
Dinv16687 Davidia involucrata HOM05D000088 ORTHO05D002723 5.0e-41 171.4 198 51.5
Lalb_Chr09g0329171 Lupinus albus HOM05D000088 ORTHO05D002723 5.0e-41 171.4 186 51.1
MSTRG.2333 Avicennia marina HOM05D000088 ORTHO05D002723 6.6e-41 171.0 198 50.5
SalBow8G2740 Salvia bowleyana HOM05D000088 ORTHO05D002723 8.6e-41 170.6 199 51.8
Hund05865 Selenicereus undatus HOM05D000088 ORTHO05D002723 8.6e-41 170.6 145 61.4
FAN07G1717 Fragaria x ananassa HOM05D000088 ORTHO05D002723 1.1e-40 170.2 198 50.5
Potri.008G090800 Populus trichocarpa HOM05D000088 ORTHO05D002723 1.1e-40 170.2 197 51.8
TAR371G1093 Trochodendron aralioides HOM05D000088 ORTHO05D002723 1.1e-40 170.2 171 55.0
CiPaw.05G130000 Carya illinoinensis HOM05D000088 ORTHO05D002723 1.5e-40 169.9 193 49.7
Actinidia12303 Actinidia chinensis HOM05D000088 ORTHO05D002723 1.9e-40 169.5 198 50.0
Aqoxy3G03481 Aquilegia oxysepala HOM05D000088 ORTHO05D002723 1.9e-40 169.5 176 52.8
Cc11_g12640 Coffea canephora HOM05D000088 ORTHO05D002723 1.9e-40 169.5 198 48.5
DCAR_007175 Daucus carota HOM05D000088 ORTHO05D002723 1.9e-40 169.5 195 49.2
Gorai.013G089100 Gossypium raimondii HOM05D000088 ORTHO05D002723 2.5e-40 169.1 196 50.0
Duzib248G1678 Durio zibethinus HOM05D000088 ORTHO05D002723 4.3e-40 168.3 191 49.7
Gohir.A13G085100 Gossypium hirsutum HOM05D000088 ORTHO05D002723 4.3e-40 168.3 196 50.0
FvH4_4g30780 Fragaria vesca HOM05D000088 ORTHO05D002723 5.6e-40 167.9 198 51.0
FAN12G3418 Fragaria x ananassa HOM05D000088 ORTHO05D002723 5.6e-40 167.9 198 51.0
MSTRG.13430 Avicennia marina HOM05D000088 ORTHO05D002723 7.3e-40 167.5 198 49.5
ECA233G4788 Erigeron canadensis HOM05D000088 ORTHO05D002723 7.3e-40 167.5 198 49.0
Lalb_Chr16g0385661 Lupinus albus HOM05D000088 ORTHO05D002723 9.5e-40 167.2 186 50.0
Peaxi162Scf00222g00246 Petunia axillaris HOM05D000088 ORTHO05D002723 9.5e-40 167.2 163 55.8
HPP92_016904 Vanilla planifolia HOM05D000088 ORTHO05D002723 9.5e-40 167.2 201 48.3
Ah.03g134730 Amaranthus hybridus HOM05D000088 ORTHO05D002723 1.2e-39 166.8 184 51.6
Migut.L01250 Erythranthe guttata HOM05D000088 ORTHO05D002723 1.2e-39 166.8 171 53.2
Gohir.D13G077900 Gossypium hirsutum HOM05D000088 ORTHO05D002723 1.2e-39 166.8 196 49.5
CSS0019856 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 1.6e-39 166.4 195 49.7
DCAR_030993 Daucus carota HOM05D000088 ORTHO05D002723 2.1e-39 166.0 199 49.7
FAN22G1820 Fragaria x ananassa HOM05D000088 ORTHO05D002723 2.1e-39 166.0 199 49.2
Solyc05g013070.3 Solanum lycopersicum HOM05D000088 ORTHO05D002723 2.1e-39 166.0 198 49.5
Glyma.07G228000 Glycine max HOM05D000088 ORTHO05D002723 2.8e-39 165.6 185 49.7
PGSC0003DMG400028346 Solanum tuberosum HOM05D000088 ORTHO05D002723 4.7e-39 164.9 198 48.0
PSO478G1272 Papaver somniferum HOM05D000088 ORTHO05D002723 6.2e-39 164.5 176 51.1
Sopen05g007840 Solanum pennellii HOM05D000088 ORTHO05D002723 6.2e-39 164.5 198 49.0
C06p48190 Brassica napus HOM05D000088 ORTHO05D002723 8.1e-39 164.1 134 68.7
Lj4g0024034 Lotus japonicus HOM05D000088 ORTHO05D002723 8.1e-39 164.1 177 50.8
Sabra10G0124900 Salix brachista HOM05D000088 ORTHO05D002723 8.1e-39 164.1 212 47.2
arahy.Tifrunner.gnm1.ann1.47C61G Arachis hypogaea HOM05D000088 ORTHO05D002723 1.1e-38 163.7 172 52.3
arahy.Tifrunner.gnm1.ann1.EJ8ZFW Arachis hypogaea HOM05D000088 ORTHO05D002723 1.1e-38 163.7 172 52.3
CDE07G0214 Ceratophyllum demersum HOM05D000088 ORTHO05D002723 1.1e-38 163.7 187 49.2
Oeu021075.6 Olea europaea HOM05D000088 ORTHO05D002723 1.1e-38 163.7 231 43.7
TWI79G1035 Tripterygium wilfordii HOM05D000088 ORTHO05D002723 1.1e-38 163.7 199 49.2
Migut.E00071 Erythranthe guttata HOM05D000088 ORTHO05D002723 1.4e-38 163.3 198 49.5
Medtr4g082325 Medicago truncatula HOM05D000088 ORTHO05D002723 1.4e-38 163.3 176 51.1
vmacro01348 Vaccinium macrocarpon HOM05D000088 ORTHO05D002723 1.8e-38 162.9 173 53.2
HanXRQChr08g0210651 Helianthus annuus HOM05D000088 ORTHO05D002723 2.3e-38 162.5 196 48.0
Psat7g156080 Pisum sativum HOM05D000088 ORTHO05D002723 2.3e-38 162.5 177 50.3
CSS0044737 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 3.1e-38 162.2 193 48.7
CSS0046870 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 3.1e-38 162.2 193 48.7
Ca_23883_v3 Cicer arietinum L. HOM05D000088 ORTHO05D002723 4.0e-38 161.8 176 50.6
ATR0564G423 Amborella trichopoda HOM05D000088 ORTHO05D002723 5.2e-38 161.4 170 53.5
DCAR_027439 Daucus carota HOM05D000088 ORTHO05D002723 6.8e-38 161.0 195 47.7
Nitab4.5_0004906g0030 Nicotiana tabacum HOM05D000088 ORTHO05D002723 6.8e-38 161.0 173 51.4
SGA_v2.0_scaffold455G51908 Striga asiatica HOM05D000088 ORTHO05D002723 6.8e-38 161.0 198 47.0
Glyma.01G052600 Glycine max HOM05D000088 ORTHO05D002723 8.9e-38 160.6 189 49.7
HanXRQChr17g0545371 Helianthus annuus HOM05D000088 ORTHO05D002723 8.9e-38 160.6 193 48.2
Phvul.002G169100 Phaseolus vulgaris HOM05D000088 ORTHO05D002723 1.5e-37 159.8 170 52.4
TPR.G34086 Trifolium pratense HOM05D000088 ORTHO05D002723 1.5e-37 159.8 176 50.6
arahy.Tifrunner.gnm1.ann1.0QRZ59 Arachis hypogaea HOM05D000088 ORTHO05D002723 3.4e-37 158.7 188 48.4
ECA246G4818 Erigeron canadensis HOM05D000088 ORTHO05D002723 3.4e-37 158.7 190 49.5
Lsat_1_v5_gn_3_51840 Lactuca sativa HOM05D000088 ORTHO05D002723 3.4e-37 158.7 193 47.7
Nitab4.5_0000391g0280 Nicotiana tabacum HOM05D000088 ORTHO05D002723 4.4e-37 158.3 173 50.9
VMungo1215G0771 Vigna mungo HOM05D000088 ORTHO05D002723 5.8e-37 157.9 176 51.1
PSO063G1877 Papaver somniferum HOM05D000088 ORTHO05D002723 7.5e-37 157.5 185 48.1
Glyma.20G031300 Glycine max HOM05D000088 ORTHO05D002723 9.9e-37 157.1 170 51.2
Phvul.002G091900 Phaseolus vulgaris HOM05D000088 ORTHO05D002723 1.3e-36 156.8 174 51.7
VMungo0251G2979 Vigna mungo HOM05D000088 ORTHO05D002723 2.2e-36 156.0 170 51.2
Oeu016240.4 Olea europaea HOM05D000088 ORTHO05D002723 3.7e-36 155.2 219 43.4
PSO063G1164 Papaver somniferum HOM05D000088 ORTHO05D002723 1.1e-35 153.7 185 47.6
PSO198G0068 Papaver somniferum HOM05D000088 ORTHO05D002723 1.1e-35 153.7 185 47.6
Rhsim12G0079000 Rhododendron simsii HOM05D000088 ORTHO05D002723 2.4e-35 152.5 200 45.5
BcaC04g20116 Brassica carinata HOM05D000088 ORTHO05D002723 4.1e-35 151.8 73 95.9
AUR62005837 Chenopodium quinoa HOM05D000088 ORTHO05D002723 4.1e-35 151.8 163 52.1
AUR62032831 Chenopodium quinoa HOM05D000088 ORTHO05D002723 4.1e-35 151.8 163 52.1
MBI02_g14226_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D002723 9.2e-35 150.6 246 41.1
Lj2g0027547 Lotus japonicus HOM05D000088 ORTHO05D002723 1.0e-33 147.1 173 48.6
vmacro16350 Vaccinium macrocarpon HOM05D000088 ORTHO05D002723 1.3e-33 146.7 272 36.4
Zm00001eb328410 Zea mays HOM05D000088 ORTHO05D002723 7.3e-32 141.0 173 46.2
CiPaw.06G088300 Carya illinoinensis HOM05D000088 ORTHO05D002723 1.2e-31 140.2 73 83.6
Eucgr.B03199 Eucalyptus grandis HOM05D000088 ORTHO05D002723 2.4e-30 136.0 74 81.1
Os07g0632800 Oryza sativa ssp. japonica HOM05D000088 ORTHO05D002723 6.8e-30 134.4 157 47.1
Solyc01g010950.3 Solanum lycopersicum HOM05D000088 ORTHO05D002723 1.2e-29 133.7 73 80.8
Sopen01g006790 Solanum pennellii HOM05D000088 ORTHO05D002723 1.2e-29 133.7 73 80.8
MD13G1068700 Malus domestica HOM05D000088 ORTHO05D002723 3.4e-29 132.1 165 44.8
CAN.G964.31 Capsicum annuum HOM05D000088 ORTHO05D002723 4.4e-29 131.7 73 80.8
arahy.Tifrunner.gnm1.ann1.SA054G Arachis hypogaea HOM05D000088 ORTHO05D002723 8.4e-28 127.5 72 75.0
Actinidia33222 Actinidia chinensis HOM05D000088 ORTHO05D002723 8.1e-23 110.9 167 42.5
DCAR_027440 Daucus carota HOM05D000088 ORTHO05D002723 7.6e-21 104.4 163 40.5
Nn3g17321 Nelumbo nucifera HOM05D000088 ORTHO05D002723 2.9e-20 102.4 164 44.5
SMO348G0065 Selaginella moellendorffii HOM05D000088 ORTHO05D002723 1.1e-16 90.5 169 34.3
AagrBONN_evm.TU.Sc2ySwM_344.1476 Anthoceros agrestis HOM05D000088 ORTHO05D002723 3.3e-16 89.0 58 69.0
Mapoly0031s0049 Marchantia polymorpha HOM05D000088 ORTHO05D002723 3.3e-16 89.0 165 35.8
BolC1t01806H Brassica oleracea HOM05D059596 ORTHO05D039216 5.6e-16 88.2 72 61.1
Pp3c16_8860 Physcomitrium patens HOM05D000088 ORTHO05D002723 9.6e-16 87.4 58 62.1
Pp3c5_19480 Physcomitrium patens HOM05D000088 ORTHO05D002723 1.3e-15 87.0 81 50.6
TAR622G1310 Trochodendron aralioides HOM05D000088 ORTHO05D002723 4.8e-15 85.1 154 39.6
SEGI_00429 Sequoiadendron giganteum HOM05D000088 ORTHO05D002723 3.8e-12 75.5 146 31.5
FAN11G3157 Fragaria x ananassa HOM05D015346 ORTHO05D020740 1.1e-11 73.9 41 73.2
FAN16G2657 Fragaria x ananassa HOM05D015346 ORTHO05D020740 1.1e-11 73.9 41 73.2
FAN14G5169 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.4e-11 73.6 41 73.2
AagrBONN_evm.TU.Sc2ySwM_362.128 Anthoceros agrestis HOM05D000088 ORTHO05D002723 4.2e-11 72.0 99 42.4
FAN26G0476 Fragaria x ananassa HOM05D013168 ORTHO05D020740 3.0e-09 65.9 34 73.5
CBR_g32000 Chara braunii HOM05D000239 ORTHO05D002723 3.9e-09 65.5 48 58.3
Pp3c16_9370 Physcomitrium patens HOM05D000088 ORTHO05D002723 5.1e-09 65.1 55 58.2
Pp3c6_6480 Physcomitrium patens HOM05D000088 ORTHO05D002723 1.5e-08 63.5 56 53.6
Pp3c11_21730 Physcomitrium patens HOM05D000088 ORTHO05D002723 9.6e-08 60.8 51 52.9
Ah.02g129390 Amaranthus hybridus HOM05D000088 ORTHO05D002723 2.1e-07 59.7 72 54.2
SEGI_04335 Sequoiadendron giganteum HOM05D000088 ORTHO05D002723 2.1e-07 59.7 33 84.8
CBR_g24251 Chara braunii HOM05D000088 ORTHO05D002723 4.8e-07 58.5 115 34.8
Migut.B01744 Erythranthe guttata HOM05D000088 ORTHO05D002723 1.1e-06 57.4 49 49.0
Dinv32471 Davidia involucrata HOM05D000088 ORTHO05D002723 4.0e-06 55.5 49 44.9
DCAR_006925 Daucus carota HOM05D000088 ORTHO05D002723 5.3e-06 55.1 63 42.9


User provided reference genes

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