Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 4.5e-184 647.9 350 100.0
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 4.5e-184 647.9 350 100.0
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 6.5e-183 644.0 350 98.6
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 2.1e-173 612.5 354 94.6
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 2.1e-173 612.5 354 94.6
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 4.4e-155 551.6 357 84.3
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 5.7e-155 551.2 356 83.7
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 1.3e-154 550.1 355 84.8
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 2.2e-154 549.3 354 85.0
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 2.2e-154 549.3 361 83.1
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 2.4e-153 545.8 361 82.3
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 4.5e-152 541.6 355 84.2
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 9.7e-147 523.9 353 83.9
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 1.3e-122 443.7 355 73.0
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 1.3e-119 433.7 353 70.5
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 8.6e-119 431.0 353 66.9
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 4.0e-116 422.2 358 66.2
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 1.2e-115 420.6 354 68.9
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 3.7e-114 415.6 355 65.9
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 7.0e-113 411.4 354 66.1
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 4.6e-112 408.7 360 63.6
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 7.8e-112 407.9 357 67.8
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 8.6e-111 404.4 362 61.6
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.5e-110 403.7 359 66.0
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 2.5e-110 402.9 359 66.0
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 5.6e-110 401.7 359 66.3
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 9.5e-110 401.0 357 62.2
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 1.6e-109 400.2 356 64.0
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 6.8e-108 394.8 361 59.8
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 4.4e-107 392.1 350 64.3
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 4.4e-107 392.1 357 63.3
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 1.4e-105 387.1 357 59.7
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 1.2e-104 384.0 350 62.9
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 1.6e-104 383.6 363 60.9
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 1.7e-103 380.2 380 60.8
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 1.7e-103 380.2 358 58.7
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 1.1e-102 377.5 408 57.1
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 1.5e-102 377.1 352 61.9
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.5e-102 377.1 359 62.7
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 9.5e-102 374.4 357 62.7
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 1.6e-101 373.6 355 63.1
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 1.6e-101 373.6 355 61.7
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 2.1e-101 373.2 357 62.5
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 8.1e-101 371.3 359 61.8
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 1.8e-100 370.2 352 61.4
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 2.4e-100 369.8 352 61.6
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 1.5e-99 367.1 355 63.1
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.0e-99 366.7 357 58.3
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 2.6e-99 366.3 357 60.5
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 2.6e-99 366.3 357 63.6
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 5.8e-99 365.2 335 65.1
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 9.9e-99 364.4 358 61.7
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.2e-98 363.2 357 57.1
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 4.9e-98 362.1 357 56.9
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 1.4e-97 360.5 373 58.2
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 1.9e-97 360.1 357 56.6
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.9e-97 360.1 357 56.6
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 7.1e-97 358.2 351 57.8
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 1.0e-95 354.4 355 58.9
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 1.3e-95 354.0 363 58.4
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 1.1e-94 350.9 358 60.6
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 1.1e-94 350.9 364 57.1
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 3.3e-94 349.4 365 55.6
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 5.6e-94 348.6 353 60.3
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.6e-93 347.1 362 58.3
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 2.1e-93 346.7 363 57.9
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.5e-91 340.5 361 56.0
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 4.4e-91 339.0 351 59.0
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 7.6e-91 338.2 365 55.9
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 1.3e-90 337.4 355 56.9
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 2.9e-90 336.3 300 64.3
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 4.9e-90 335.5 284 69.4
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 6.4e-90 335.1 352 57.1
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 8.4e-90 334.7 365 57.3
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 2.4e-89 333.2 301 62.5
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 5.4e-89 332.0 286 65.7
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.6e-88 330.5 359 55.4
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 7.8e-88 328.2 367 56.7
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 1.3e-87 327.4 368 55.4
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 1.3e-87 327.4 366 55.5
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.1e-86 324.3 352 56.5
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 1.5e-86 323.9 351 57.3
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 1.9e-86 323.6 368 51.6
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 7.3e-86 321.6 352 56.0
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 1.6e-85 320.5 365 55.3
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 4.8e-85 318.9 367 53.7
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 4.8e-85 318.9 193 81.9
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 4.8e-85 318.9 360 53.6
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 6.2e-85 318.5 354 54.0
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 1.4e-84 317.4 196 77.6
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 4.0e-84 315.8 351 54.4
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 7.6e-83 311.6 325 54.5
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 7.6e-83 311.6 354 53.1
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 3.8e-82 309.3 354 53.7
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 2.5e-78 296.6 431 47.8
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 6.4e-74 282.0 395 49.6
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 7.1e-73 278.5 286 60.1
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 2.1e-72 276.9 285 61.1
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 1.8e-71 273.9 285 60.4
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 2.1e-69 266.9 325 52.0
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 6.2e-69 265.4 329 51.7
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 2.0e-67 260.4 285 57.5
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 3.5e-64 249.6 281 58.7
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 6.9e-60 235.3 202 62.4
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 3.8e-58 229.6 263 56.7
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 1.9e-49 200.7 249 43.4
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 1.2e-48 198.0 241 47.7
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 1.3e-45 188.0 173 51.4
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 5.3e-44 182.6 327 38.5
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 7.7e-43 178.7 193 45.6
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 2.4e-36 157.1 82 91.5
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 1.3e-21 108.2 140 40.0
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 1.0e-18 98.6 138 37.7
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 1.5e-17 94.7 61 78.7
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 1.9e-17 94.4 136 37.5
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 4.0e-15 86.7 52 84.6
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 1.2e-14 85.1 190 30.5
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 1.5e-14 84.7 72 55.6
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 2.5e-09 67.4 44 63.6
TAR625G0150 Trochodendron aralioides HOM05D006540 ORTHO05D008202 5.8e-06 56.2 99 42.4
Pp3c6_29630 Physcomitrium patens HOM05D006540 ORTHO05D008202 9.8e-06 55.5 79 36.7


User provided reference genes

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