Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p35420 Brassica napus HOM05D005452 ORTHO05D006618 1.6e-47 192.6 106 100.0
BolC7t44066H Brassica oleracea HOM05D005452 ORTHO05D006618 5.2e-43 177.6 98 99.0
A06p42060 Brassica napus HOM05D005452 ORTHO05D006618 1.5e-42 176.0 98 99.0
BraA06t27123Z Brassica rapa HOM05D005452 ORTHO05D006618 1.5e-42 176.0 98 99.0
BcaB07g30231 Brassica carinata HOM05D005452 ORTHO05D006618 1.3e-41 172.9 98 96.9
BcaC03g17336 Brassica carinata HOM05D005452 ORTHO05D006618 1.3e-41 172.9 98 96.9
A02p34530 Brassica napus HOM05D005452 ORTHO05D006618 1.3e-41 172.9 98 96.9
C02p52850 Brassica napus HOM05D005452 ORTHO05D006618 1.3e-41 172.9 98 96.9
BraA02t08463Z Brassica rapa HOM05D005452 ORTHO05D006618 1.3e-41 172.9 98 96.9
Thhalv10005184m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 1.1e-40 169.9 98 93.9
Thhalv10005186m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 1.1e-40 169.9 98 93.9
BolC2t11364H Brassica oleracea HOM05D005452 ORTHO05D006618 2.4e-40 168.7 98 94.9
Sp2g15510 Schrenkiella parvula HOM05D005452 ORTHO05D006618 7.0e-40 167.2 99 94.9
Carub.0005s0428 Capsella rubella HOM05D005452 ORTHO05D006618 1.1e-37 159.8 99 89.9
AT3G26360 Arabidopsis thaliana HOM05D005452 ORTHO05D006618 1.5e-37 159.5 99 90.9
AL5G15130 Arabidopsis lyrata HOM05D005452 ORTHO05D006618 6.1e-36 154.1 98 87.8
CARHR147370 Cardamine hirsuta HOM05D005452 ORTHO05D006618 4.4e-34 147.9 99 83.8
THA.LOC104805276 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 4.4e-34 147.9 98 80.6
Aa31LG2G6150 Aethionema arabicum HOM05D005452 ORTHO05D006618 1.3e-33 146.4 98 79.6
THA.LOC104824009 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 2.2e-33 145.6 98 79.6
vmacro06707 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 8.9e-27 123.6 101 69.3
Dinv15209 Davidia involucrata HOM05D005452 ORTHO05D006618 3.4e-26 121.7 104 66.3
Atru.chr11.2163 Acer truncatum HOM05D005452 ORTHO05D006618 7.5e-26 120.6 110 58.2
COL.COLO4_23485 Corchorus olitorius HOM05D005452 ORTHO05D006618 7.5e-26 120.6 106 66.0
GSVIVG01003295001 Vitis vinifera HOM05D005452 ORTHO05D006618 7.5e-26 120.6 92 70.7
Ciclev10033123m.g Citrus clementina HOM05D005452 ORTHO05D006618 1.7e-25 119.4 110 60.0
CSS0031935 Camellia sinensis var. sinensis HOM05D005452 ORTHO05D006618 2.2e-25 119.0 105 63.8
CANSAT11G1680 Cannabis sativa HOM05D005452 ORTHO05D006618 2.2e-25 119.0 98 67.3
Oeu056705.1 Olea europaea HOM05D005452 ORTHO05D006618 2.9e-25 118.6 105 63.8
Thecc.02G263300 Theobroma cacao HOM05D005452 ORTHO05D006618 2.9e-25 118.6 108 63.0
Actinidia01359 Actinidia chinensis HOM05D005452 ORTHO05D006618 4.9e-25 117.9 105 64.8
Gohir.A05G223400 Gossypium hirsutum HOM05D005452 ORTHO05D006618 1.1e-24 116.7 108 63.0
TAR371G0357 Trochodendron aralioides HOM05D005452 ORTHO05D006618 1.4e-24 116.3 100 68.0
Actinidia08127 Actinidia chinensis HOM05D005452 ORTHO05D006618 1.9e-24 115.9 108 62.0
Sed0011581 Sechium edule HOM05D005452 ORTHO05D006618 1.9e-24 115.9 105 62.9
Hund25399 Selenicereus undatus HOM05D005452 ORTHO05D006618 1.9e-24 115.9 98 67.3
MELO3C030920.2 Cucumis melo HOM05D005452 ORTHO05D006618 2.4e-24 115.5 102 63.7
CiPaw.04G056800 Carya illinoinensis HOM05D005452 ORTHO05D006618 3.2e-24 115.2 80 78.8
CiPaw.05G172100 Carya illinoinensis HOM05D005452 ORTHO05D006618 3.2e-24 115.2 112 61.6
Gorai.009G233700 Gossypium raimondii HOM05D005452 ORTHO05D006618 3.2e-24 115.2 108 63.0
Nitab4.5_0000524g0050 Nicotiana tabacum HOM05D005452 ORTHO05D006618 3.2e-24 115.2 110 60.9
RcHm_v2.0_Chr7g0208311 Rosa chinensis HOM05D005452 ORTHO05D006618 3.2e-24 115.2 109 62.4
TAR629G2696 Trochodendron aralioides HOM05D005452 ORTHO05D006618 5.4e-24 114.4 107 62.6
PGR102G3216 Punica granatum HOM05D005452 ORTHO05D006618 7.0e-24 114.0 108 61.1
CsaV3_3G032030 Cucumis sativus L. HOM05D005452 ORTHO05D006618 9.2e-24 113.6 101 64.4
Duzib268G1139 Durio zibethinus HOM05D005452 ORTHO05D006618 1.2e-23 113.2 108 59.3
Hund06040 Selenicereus undatus HOM05D005452 ORTHO05D006618 1.2e-23 113.2 104 62.5
ClCG10G012250 Citrullus lanatus HOM05D005452 ORTHO05D006618 1.6e-23 112.8 101 63.4
Prupe.5G046400 Prunus persica HOM05D005452 ORTHO05D006618 2.0e-23 112.5 108 61.1
Nitab4.5_0004217g0010 Nicotiana tabacum HOM05D001410 ORTHO05D006618 2.7e-23 112.1 106 62.3
Sc04g0009650 Simmondsia chinensis HOM05D005452 ORTHO05D006618 2.7e-23 112.1 104 62.5
FvH4_5g21170 Fragaria vesca HOM05D005452 ORTHO05D006618 3.5e-23 111.7 89 67.4
Rhsim12G0039600 Rhododendron simsii HOM05D005452 ORTHO05D006618 3.5e-23 111.7 85 71.8
SGA_v2.0_scaffold12G06036 Striga asiatica HOM05D005452 ORTHO05D006618 3.5e-23 111.7 99 63.6
DCAR_003344 Daucus carota HOM05D005452 ORTHO05D006618 6.0e-23 110.9 105 59.0
QL03p056962 Quercus lobata HOM05D005452 ORTHO05D006618 6.0e-23 110.9 110 59.1
AUR62024237 Chenopodium quinoa HOM05D005452 ORTHO05D006618 7.8e-23 110.5 107 58.9
Eucgr.B03269 Eucalyptus grandis HOM05D005452 ORTHO05D006618 7.8e-23 110.5 105 60.0
FAN13G0782 Fragaria x ananassa HOM05D005452 ORTHO05D006618 7.8e-23 110.5 89 67.4
Lj5g0027337 Lotus japonicus HOM05D005452 ORTHO05D006618 7.8e-23 110.5 110 57.3
Manes.13G021600 Manihot esculenta HOM05D005452 ORTHO05D006618 7.8e-23 110.5 109 56.9
Nitab4.5_0002322g0150 Nicotiana tabacum HOM05D001410 ORTHO05D006618 7.8e-23 110.5 106 61.3
Glyma.18G249300 Glycine max HOM05D005452 ORTHO05D006618 1.3e-22 109.8 110 57.3
MD09G1284200 Malus domestica HOM05D005452 ORTHO05D006618 1.3e-22 109.8 108 56.5
Lj4g0014743 Lotus japonicus HOM05D005452 ORTHO05D006618 1.7e-22 109.4 110 56.4
Lalb_Chr03g0040661 Lupinus albus HOM05D005452 ORTHO05D006618 1.7e-22 109.4 110 55.5
Lalb_Chr01g0021741 Lupinus albus HOM05D005452 ORTHO05D006618 2.3e-22 109.0 110 54.5
EL10Ac5g10516 Beta vulgaris HOM05D005452 ORTHO05D006618 3.0e-22 108.6 104 58.7
CAN.G128.103 Capsicum annuum HOM05D005452 ORTHO05D000001 3.9e-22 108.2 98 63.3
unitig_22.g6942 Utricularia gibba HOM05D005452 ORTHO05D006618 3.9e-22 108.2 100 63.0
FAN04G1087 Fragaria x ananassa HOM05D005452 ORTHO05D006618 5.0e-22 107.8 87 66.7
Hma1.2p1_0079F.1_g041110 Hydrangea macrophylla HOM05D005452 ORTHO05D006618 5.0e-22 107.8 97 61.9
ATR0691G211 Amborella trichopoda HOM05D005452 ORTHO05D006618 6.6e-22 107.5 77 72.7
HanXRQChr12g0371911 Helianthus annuus HOM05D005452 ORTHO05D006618 6.6e-22 107.5 104 56.7
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 8.6e-22 107.1 108 59.3
FAN08G2976 Fragaria x ananassa HOM05D005452 ORTHO05D006618 8.6e-22 107.1 87 65.5
FAN18G0628 Fragaria x ananassa HOM05D005452 ORTHO05D006618 8.6e-22 107.1 76 73.7
Sopen10g023920 Solanum pennellii HOM05D005452 ORTHO05D006618 8.6e-22 107.1 80 73.8
Glyma.09G244200 Glycine max HOM05D005452 ORTHO05D006618 1.1e-21 106.7 110 56.4
MD06G1040200 Malus domestica HOM05D005452 ORTHO05D006618 1.1e-21 106.7 109 54.1
Lj3C54T6 Lonicera japonica HOM05D005452 ORTHO05D006618 1.5e-21 106.3 89 66.3
SalBow6G0301 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.5e-21 106.3 88 62.5
Solyc10g054060.2 Solanum lycopersicum HOM05D005452 ORTHO05D006618 1.5e-21 106.3 79 74.7
Cfa009234 Carpinus fangiana HOM05D005452 ORTHO05D006618 1.9e-21 105.9 107 58.9
AUR62005503 Chenopodium quinoa HOM05D005452 ORTHO05D006618 1.9e-21 105.9 96 61.5
Lsat_1_v5_gn_4_85301 Lactuca sativa HOM05D005452 ORTHO05D006618 1.9e-21 105.9 106 53.8
VMungo1383G1569 Vigna mungo HOM05D005452 ORTHO05D006618 1.9e-21 105.9 110 52.7
Cpa.g.c31584 Carica papaya HOM05D005452 ORTHO05D006618 2.5e-21 105.5 107 57.0
ECA233G5110 Erigeron canadensis HOM05D005452 ORTHO05D006618 2.5e-21 105.5 90 63.3
Psat5g193600 Pisum sativum HOM05D005452 ORTHO05D006618 2.5e-21 105.5 104 54.8
Gohir.D05G226100 Gossypium hirsutum HOM05D005452 ORTHO05D006618 3.3e-21 105.1 75 76.0
SalBow6G0335 Salvia bowleyana HOM05D005452 ORTHO05D006618 3.3e-21 105.1 84 64.3
SalBow6G1267 Salvia bowleyana HOM05D005452 ORTHO05D006618 3.3e-21 105.1 84 64.3
SalBow6G2856 Salvia bowleyana HOM05D005452 ORTHO05D006618 3.3e-21 105.1 84 64.3
SalBow6G4340 Salvia bowleyana HOM05D005452 ORTHO05D006618 3.3e-21 105.1 84 64.3
Aqoxy3G01257 Aquilegia oxysepala HOM05D005452 ORTHO05D006618 4.3e-21 104.8 106 59.4
Cc01_g03580 Coffea canephora HOM05D005452 ORTHO05D006618 4.3e-21 104.8 104 55.8
Lsat_1_v5_gn_8_152800 Lactuca sativa HOM05D005452 ORTHO05D006618 4.3e-21 104.8 105 53.3
MD02G1109400 Malus domestica HOM05D005452 ORTHO05D006618 4.3e-21 104.8 78 65.4
SalBow6G4107 Salvia bowleyana HOM05D005452 ORTHO05D006618 5.6e-21 104.4 81 65.4
SalBow6G4977 Salvia bowleyana HOM05D005452 ORTHO05D006618 5.6e-21 104.4 81 65.4
Medtr3g464760 Medicago truncatula HOM05D005452 ORTHO05D006618 7.3e-21 104.0 110 53.6
Oeu049174.1 Olea europaea HOM05D005452 ORTHO05D006618 1.2e-20 103.2 104 61.5
SalBow6G3385 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.6e-20 102.8 85 61.2
SalBow6G6484 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.1e-20 102.4 84 63.1
SGA_v2.0_scaffold293G47424 Striga asiatica HOM05D005452 ORTHO05D006618 2.1e-20 102.4 90 63.3
PSO210G2974 Papaver somniferum HOM05D005452 ORTHO05D006618 2.8e-20 102.1 109 56.0
TWI36G1628 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 4.7e-20 101.3 107 54.2
VMungo1080G1735 Vigna mungo HOM05D005452 ORTHO05D006618 4.7e-20 101.3 110 51.8
Phvul.008G048300 Phaseolus vulgaris HOM05D005452 ORTHO05D006618 6.2e-20 100.9 110 52.7
MBI15_g04991_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 8.1e-20 100.5 78 67.9
Peaxi162Scf00128g00434 Petunia axillaris HOM05D005452 ORTHO05D006618 8.1e-20 100.5 95 63.2
PSO017G6805 Papaver somniferum HOM05D005452 ORTHO05D006618 1.1e-19 100.1 109 55.0
Peaxi162Scf00067g00116 Petunia axillaris HOM05D005452 ORTHO05D006618 1.1e-19 100.1 104 58.7
TPR.G32914 Trifolium pratense HOM05D005452 ORTHO05D006618 1.1e-19 100.1 108 54.6
Ca_14963_v3 Cicer arietinum L. HOM05D005452 ORTHO05D006618 1.4e-19 99.8 110 51.8
Nn1g08774 Nelumbo nucifera HOM05D005452 ORTHO05D006618 1.8e-19 99.4 107 54.2
TWI18G1019 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 1.8e-19 99.4 107 52.3
HPP92_017381 Vanilla planifolia HOM05D005452 ORTHO05D006618 1.8e-19 99.4 84 61.9
Migut.K00615 Erythranthe guttata HOM05D005452 ORTHO05D006618 2.3e-19 99.0 95 62.1
Lj4g0021307 Lotus japonicus HOM05D005452 ORTHO05D006618 2.3e-19 99.0 98 56.1
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 2.3e-19 99.0 110 51.8
CDE10G1265 Ceratophyllum demersum HOM05D005452 ORTHO05D006618 1.2e-18 96.7 104 53.8
MD12G1125700 Malus domestica HOM05D005452 ORTHO05D006618 9.8e-18 93.6 108 50.9
MD04G1159200 Malus domestica HOM05D005452 ORTHO05D006618 1.7e-17 92.8 108 50.9
Potri.010G048600 Populus trichocarpa HOM05D005452 ORTHO05D006618 3.7e-17 91.7 111 48.6
SHI03748 Sapria himalayana HOM05D005452 ORTHO05D006618 3.7e-17 91.7 81 60.5
Zm00001eb217020 Zea mays HOM05D005452 ORTHO05D006618 4.9e-17 91.3 84 56.0
vmacro01118 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 1.9e-16 89.4 79 62.0
Zm00001eb053730 Zea mays HOM05D005452 ORTHO05D006618 7.1e-16 87.4 84 53.6
SalBow6G5661 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.1e-15 85.9 76 59.2
SEGI_27388 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 3.9e-14 81.6 79 55.7
SEGI_39778 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 3.9e-14 81.6 78 56.4
Os03g0694700 Oryza sativa ssp. japonica HOM05D005452 ORTHO05D006618 6.6e-14 80.9 105 45.7
MBI15_g11303_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 7.3e-13 77.4 83 57.8
unitig_8.g2920 Utricularia gibba HOM05D005452 ORTHO05D006618 8.4e-09 63.9 53 64.2
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 8.4e-09 63.9 84 45.2
Nn1g09342 Nelumbo nucifera HOM05D005452 ORTHO05D006618 3.2e-08 62.0 60 56.7
SalBow6G2133 Salvia bowleyana HOM05D009895 ORTHO05D006618 2.1e-07 59.3 49 57.1
SalBow6G0426 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.7e-07 58.9 44 65.9
Medtr3g450960 Medicago truncatula HOM05D005452 ORTHO05D006618 4.6e-07 58.2 52 55.8


User provided reference genes

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