Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 3.7e-88 328.2 166 100.0
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 2.9e-56 222.2 148 77.7
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 2.9e-56 222.2 167 71.9
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 2.9e-56 222.2 167 71.9
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 6.4e-56 221.1 148 77.0
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 6.4e-56 221.1 148 77.0
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 6.4e-56 221.1 148 77.0
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 7.1e-55 217.6 148 76.4
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 7.1e-55 217.6 167 70.1
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 9.3e-55 217.2 167 70.1
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.6e-54 216.5 148 75.0
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 2.7e-54 215.7 148 74.3
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 3.5e-54 215.3 149 74.5
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 3.5e-54 215.3 149 74.5
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 3.5e-54 215.3 148 74.3
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 3.5e-54 215.3 167 69.5
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 6.0e-54 214.5 167 68.9
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 7.8e-54 214.2 148 73.6
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.0e-53 213.8 167 67.7
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.0e-53 213.8 167 67.7
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 1.0e-53 213.8 167 68.3
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.0e-53 213.8 148 73.0
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.3e-53 213.4 148 73.0
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 1.3e-53 213.4 148 73.6
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.3e-53 213.4 165 69.7
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.7e-53 213.0 167 68.3
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.7e-53 213.0 167 68.3
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 1.7e-53 213.0 167 68.9
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 1.7e-53 213.0 148 73.0
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 2.3e-53 212.6 148 73.6
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 2.3e-53 212.6 148 73.6
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 3.0e-53 212.2 148 73.0
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 3.0e-53 212.2 167 68.3
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 3.0e-53 212.2 148 73.6
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 3.0e-53 212.2 148 73.0
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 3.9e-53 211.8 148 73.0
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 3.9e-53 211.8 148 73.6
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 5.1e-53 211.5 148 73.0
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 5.1e-53 211.5 167 68.3
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 5.1e-53 211.5 148 72.3
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 5.1e-53 211.5 148 72.3
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 6.6e-53 211.1 167 68.9
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 6.6e-53 211.1 167 67.1
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 6.6e-53 211.1 148 73.0
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 8.7e-53 210.7 148 72.3
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 8.7e-53 210.7 167 67.7
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.7e-53 210.7 167 67.1
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 8.7e-53 210.7 148 73.0
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 8.7e-53 210.7 162 67.3
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 8.7e-53 210.7 148 72.3
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.1e-52 210.3 149 73.2
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 1.1e-52 210.3 148 72.3
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 1.1e-52 210.3 148 73.0
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.1e-52 210.3 148 71.6
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 1.1e-52 210.3 149 73.2
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.5e-52 209.9 167 67.1
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.5e-52 209.9 148 71.6
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.5e-52 209.9 148 71.6
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 1.5e-52 209.9 148 73.0
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.9e-52 209.5 167 66.5
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 1.9e-52 209.5 167 67.1
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.9e-52 209.5 148 73.0
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.9e-52 209.5 148 71.6
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 1.9e-52 209.5 167 67.7
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.9e-52 209.5 148 73.0
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.5e-52 209.1 148 72.3
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 2.5e-52 209.1 148 72.3
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 2.5e-52 209.1 148 73.0
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 3.3e-52 208.8 148 72.3
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.3e-52 208.8 167 66.5
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 3.3e-52 208.8 167 66.5
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 3.3e-52 208.8 167 66.5
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 3.3e-52 208.8 148 72.3
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 3.3e-52 208.8 164 67.1
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 4.3e-52 208.4 148 72.3
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 5.6e-52 208.0 148 70.9
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 7.3e-52 207.6 167 65.3
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 7.3e-52 207.6 167 67.7
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.3e-51 206.8 167 65.9
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 1.3e-51 206.8 149 71.8
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 1.3e-51 206.8 149 71.8
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.6e-51 206.5 167 65.9
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 2.1e-51 206.1 148 71.6
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 2.1e-51 206.1 167 65.9
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.8e-51 205.7 142 73.2
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 2.8e-51 205.7 164 65.9
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 4.8e-51 204.9 148 70.3
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.2e-51 204.5 148 69.6
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 8.1e-51 204.1 148 70.3
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.1e-50 203.8 167 64.7
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.1e-50 203.8 148 70.3
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 1.8e-50 203.0 148 70.3
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 2.4e-50 202.6 167 64.7
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 3.1e-50 202.2 167 64.7
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 5.3e-50 201.4 167 64.7
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 9.0e-50 200.7 167 64.7
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 2.0e-49 199.5 175 62.3
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.0e-49 199.5 148 68.9
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 2.6e-49 199.1 148 68.2
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 2.6e-49 199.1 164 65.2
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 3.4e-49 198.7 148 70.9
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 7.6e-49 197.6 148 69.6
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 7.6e-49 197.6 168 63.7
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 7.6e-49 197.6 166 64.5
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 1.7e-48 196.4 148 67.6
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 2.2e-48 196.1 148 68.9
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 6.4e-48 194.5 167 62.9
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.4e-47 193.4 167 62.3
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.4e-47 193.4 167 62.3
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.9e-47 193.0 167 62.9
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 7.1e-47 191.0 138 72.5
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.7e-46 189.1 145 67.6
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 6.0e-46 188.0 148 68.2
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.3e-45 186.8 167 63.5
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.3e-45 186.8 167 63.5
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.3e-45 186.0 167 63.5
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 6.6e-45 184.5 139 68.3
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.5e-44 182.6 167 62.3
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 2.4e-42 176.0 148 60.1
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 4.0e-42 175.3 111 82.9
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 1.2e-41 173.7 157 59.9
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 2.0e-41 172.9 97 86.6
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 1.6e-38 163.3 147 57.8
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 3.5e-38 162.2 132 64.4
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 6.0e-38 161.4 146 56.8
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 6.7e-37 157.9 123 65.0
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 6.9e-34 147.9 146 56.2
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.0e-32 144.1 145 51.0
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.6e-30 136.7 94 74.5
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 1.6e-30 136.7 94 74.5
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.6e-30 136.7 161 45.3
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 3.5e-30 135.6 109 71.6
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 4.6e-30 135.2 95 72.6
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 6.0e-30 134.8 144 49.3
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.0e-29 134.0 161 44.7
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 5.3e-26 121.7 83 77.1
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 3.4e-25 119.0 57 94.7
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 7.6e-25 117.9 164 39.6
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 3.8e-24 115.5 58 87.9
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 1.2e-22 110.5 83 71.1
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.5e-20 103.6 154 46.8
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 2.5e-20 102.8 57 82.5
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 1.3e-19 100.5 163 36.8
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 1.3e-19 100.5 146 41.1
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 4.8e-19 98.6 145 37.2
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 4.5e-17 92.0 161 33.5
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 1.7e-16 90.1 148 40.5
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 2.5e-12 76.3 61 59.0
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 8.2e-11 71.2 165 32.1
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 1.5e-09 67.0 72 56.9
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 4.7e-06 55.5 65 43.1


User provided reference genes

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