Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p34050 Brassica napus HOM05D000371 ORTHO05D006340 4.6e-54 214.2 98 100.0
BolC7t43919H Brassica oleracea HOM05D000371 ORTHO05D006340 3.3e-52 208.0 94 100.0
C08p49860 Brassica napus HOM05D000371 ORTHO05D006340 3.8e-32 141.4 78 88.5
Sp2g27420 Schrenkiella parvula HOM05D000371 ORTHO05D006340 9.7e-20 100.1 48 93.8
CARHR278290 Cardamine hirsuta HOM05D000371 ORTHO05D006340 2.8e-19 98.6 48 89.6
Thhalv10005167m.g Eutrema salsugineum HOM05D000371 ORTHO05D006340 3.7e-19 98.2 48 89.6
BcaB07g29739 Brassica carinata HOM05D000371 ORTHO05D006340 1.1e-18 96.7 48 91.7
BcaC04g23321 Brassica carinata HOM05D000371 ORTHO05D006340 1.1e-18 96.7 48 87.5
A06p31020 Brassica napus HOM05D000371 ORTHO05D006340 1.1e-18 96.7 48 89.6
C03p61940 Brassica napus HOM05D000371 ORTHO05D006340 1.1e-18 96.7 48 89.6
BolC3t18453H Brassica oleracea HOM05D000371 ORTHO05D006340 1.1e-18 96.7 48 89.6
BolC9t53886H Brassica oleracea HOM05D000371 ORTHO05D006340 1.1e-18 96.7 48 87.5
BraA09t36513Z Brassica rapa HOM05D000371 ORTHO05D006340 1.1e-18 96.7 48 87.5
BraA06t26044Z Brassica rapa HOM05D000371 ORTHO05D006340 2.4e-18 95.5 48 87.5
AL8G41710 Arabidopsis lyrata HOM05D000371 ORTHO05D006340 3.1e-18 95.1 48 85.4
A09p08640 Brassica napus HOM05D000371 ORTHO05D006340 4.1e-18 94.7 46 89.1
Carub.0008s2515 Capsella rubella HOM05D000371 ORTHO05D006340 4.1e-18 94.7 48 85.4
AT5G64350 Arabidopsis thaliana HOM05D000371 ORTHO05D006340 3.5e-17 91.7 48 83.3
Lj6g0013164 Lotus japonicus HOM05D000371 ORTHO05D006340 5.9e-17 90.9 48 81.2
Aa31LG3G17510 Aethionema arabicum HOM05D000371 ORTHO05D006340 1.3e-16 89.7 48 79.2
Manes.07G036800 Manihot esculenta HOM05D000371 ORTHO05D006340 2.2e-16 89.0 48 81.2
Duzib132G1081 Durio zibethinus HOM05D000371 ORTHO05D006340 2.9e-16 88.6 48 77.1
Gohir.A03G176100 Gossypium hirsutum HOM05D000371 ORTHO05D006340 2.9e-16 88.6 48 77.1
Gohir.D02G199900 Gossypium hirsutum HOM05D000371 ORTHO05D006340 2.9e-16 88.6 48 77.1
Gorai.005G224600 Gossypium raimondii HOM05D000371 ORTHO05D006340 2.9e-16 88.6 48 77.1
arahy.Tifrunner.gnm1.ann1.ASG1PZ Arachis hypogaea HOM05D000371 ORTHO05D006340 8.5e-16 87.0 48 75.0
Ca_00157_v3 Cicer arietinum L. HOM05D000371 ORTHO05D006340 1.1e-15 86.7 48 75.0
Glyma.13G258500 Glycine max HOM05D000371 ORTHO05D006340 1.1e-15 86.7 48 77.1
ECA232G0442 Erigeron canadensis HOM05D000371 ORTHO05D006340 1.9e-15 85.9 48 75.0
Lsat_1_v5_gn_9_41400 Lactuca sativa HOM05D000371 ORTHO05D006340 1.9e-15 85.9 48 72.9
QL11p023863 Quercus lobata HOM05D000371 ORTHO05D006340 1.9e-15 85.9 48 72.9
Thecc.02G131800 Theobroma cacao HOM05D000371 ORTHO05D006340 1.9e-15 85.9 48 72.9
PGR142G0954 Punica granatum HOM05D000371 ORTHO05D006340 2.5e-15 85.5 48 70.8
THA.LOC104818449 Tarenaya hassleriana HOM05D000371 ORTHO05D006340 2.5e-15 85.5 48 77.1
VMungo0540G0136 Vigna mungo HOM05D000371 ORTHO05D006340 2.5e-15 85.5 48 75.0
Phvul.006G203300 Phaseolus vulgaris HOM05D000371 ORTHO05D006340 3.2e-15 85.1 48 75.0
TPR.G9488 Trifolium pratense HOM05D000371 ORTHO05D006340 3.2e-15 85.1 57 64.9
TWI14G0489 Tripterygium wilfordii HOM05D000371 ORTHO05D006340 3.2e-15 85.1 48 75.0
CANSAT11G2503 Cannabis sativa HOM05D000371 ORTHO05D006340 5.5e-15 84.3 48 72.9
CiPaw.05G030900 Carya illinoinensis HOM05D000371 ORTHO05D006340 5.5e-15 84.3 48 72.9
SGA_v2.0_scaffold14G07147 Striga asiatica HOM05D000371 ORTHO05D006340 5.5e-15 84.3 48 72.9
arahy.Tifrunner.gnm1.ann1.WN06RC Arachis hypogaea HOM05D000371 ORTHO05D006340 7.2e-15 84.0 48 72.9
Potri.007G113100 Populus trichocarpa HOM05D000371 ORTHO05D006340 7.2e-15 84.0 48 75.0
TWI59G1065 Tripterygium wilfordii HOM05D000371 ORTHO05D006340 7.2e-15 84.0 48 72.9
Sed0020537 Sechium edule HOM05D000371 ORTHO05D006340 9.4e-15 83.6 48 72.9
CDE10G0885 Ceratophyllum demersum HOM05D000371 ORTHO05D006340 1.2e-14 83.2 48 75.0
COL.COLO4_32358 Corchorus olitorius HOM05D000371 ORTHO05D006340 1.2e-14 83.2 48 72.9
Oeu027061.1 Olea europaea HOM05D000371 ORTHO05D006340 1.2e-14 83.2 48 75.0
Sc08g0003840 Simmondsia chinensis HOM05D000371 ORTHO05D006340 1.2e-14 83.2 48 75.0
SGA_v2.0_scaffold83G26354 Striga asiatica HOM05D000371 ORTHO05D006340 1.2e-14 83.2 48 70.8
THA.LOC104799807 Tarenaya hassleriana HOM05D000371 ORTHO05D006340 1.6e-14 82.8 48 75.0
Medtr2g009390 Medicago truncatula HOM05D000371 ORTHO05D006340 2.1e-14 82.4 48 72.9
Ah.01g024020 Amaranthus hybridus HOM05D001755 ORTHO05D006340 2.7e-14 82.0 58 63.8
Sed0013666 Sechium edule HOM05D000371 ORTHO05D006340 2.7e-14 82.0 48 70.8
CSS0029316 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D006340 3.6e-14 81.6 48 70.8
Cc02_g21010 Coffea canephora HOM05D000371 ORTHO05D006340 3.6e-14 81.6 48 70.8
Psat1g215120 Pisum sativum HOM05D000371 ORTHO05D006340 3.6e-14 81.6 48 75.0
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 3.6e-14 81.6 65 52.3
Cfa005697 Carpinus fangiana HOM05D000371 ORTHO05D006340 4.7e-14 81.3 48 70.8
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 4.7e-14 81.3 56 60.7
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 4.7e-14 81.3 56 60.7
SalBow6G0133 Salvia bowleyana HOM05D000371 ORTHO05D006340 4.7e-14 81.3 48 72.9
SalBow6G1985 Salvia bowleyana HOM05D000371 ORTHO05D006340 4.7e-14 81.3 48 72.9
TAR625G1317 Trochodendron aralioides HOM05D000371 ORTHO05D006340 4.7e-14 81.3 48 70.8
SalBow8G3269 Salvia bowleyana HOM05D000371 ORTHO05D006340 6.1e-14 80.9 48 68.8
DCAR_004188 Daucus carota HOM05D000371 ORTHO05D006340 8.0e-14 80.5 48 70.8
CsaV3_7G006970 Cucumis sativus L. HOM05D000371 ORTHO05D006340 1.0e-13 80.1 48 70.8
RhsimUnG0008400 Rhododendron simsii HOM05D000371 ORTHO05D006340 1.0e-13 80.1 48 72.9
RhsimUnG0106200 Rhododendron simsii HOM05D000371 ORTHO05D006340 1.0e-13 80.1 48 72.9
CAN.G523.27 Capsicum annuum HOM05D000371 ORTHO05D006340 1.4e-13 79.7 48 70.8
Migut.B00563 Erythranthe guttata HOM05D000371 ORTHO05D006340 1.4e-13 79.7 48 70.8
Nitab4.5_0001264g0200 Nicotiana tabacum HOM05D000371 ORTHO05D006340 1.4e-13 79.7 48 68.8
SalBow8G3846 Salvia bowleyana HOM05D000371 ORTHO05D006340 1.4e-13 79.7 48 66.7
Solyc01g105710.3 Solanum lycopersicum HOM05D000371 ORTHO05D006340 1.4e-13 79.7 48 70.8
Sopen01g048150 Solanum pennellii HOM05D000371 ORTHO05D006340 1.4e-13 79.7 48 70.8
Atru.BG.32.p Acer truncatum HOM05D000371 ORTHO05D006340 1.8e-13 79.3 48 70.8
Ciclev10006261m.g Citrus clementina HOM05D000371 ORTHO05D006340 1.8e-13 79.3 48 70.8
HanXRQChr15g0491901 Helianthus annuus HOM05D000371 ORTHO05D006340 1.8e-13 79.3 48 70.8
Aqoxy5G01319 Aquilegia oxysepala HOM05D000371 ORTHO05D006340 2.3e-13 79.0 48 70.8
AUR62012896 Chenopodium quinoa HOM05D000371 ORTHO05D006340 2.3e-13 79.0 58 63.8
Dinv15989 Davidia involucrata HOM05D000371 ORTHO05D006340 2.3e-13 79.0 48 68.8
Hma1.2p1_1093F.1_g256100 Hydrangea macrophylla HOM05D000371 ORTHO05D006340 2.3e-13 79.0 48 70.8
TAR381G1119 Trochodendron aralioides HOM05D000371 ORTHO05D006340 2.3e-13 79.0 48 68.8
Actinidia01164 Actinidia chinensis HOM05D000371 ORTHO05D006340 3.0e-13 78.6 48 68.8
ClCG09G015820 Citrullus lanatus HOM05D000371 ORTHO05D006340 3.0e-13 78.6 48 68.8
FAN16G2982 Fragaria x ananassa HOM05D000371 ORTHO05D006340 3.0e-13 78.6 55 60.0
Aqoxy1G01043 Aquilegia oxysepala HOM05D001176 ORTHO05D003317 4.0e-13 78.2 48 70.8
Eucgr.I02629 Eucalyptus grandis HOM05D000371 ORTHO05D006340 4.0e-13 78.2 48 68.8
PSO675G2104 Papaver somniferum HOM05D007460 ORTHO05D009396 4.0e-13 78.2 48 66.7
MSTRG.5277 Avicennia marina HOM05D000371 ORTHO05D006340 5.2e-13 77.8 48 66.7
MBI02_g19395_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D006340 5.2e-13 77.8 48 68.8
Mapoly0147s0023 Marchantia polymorpha HOM05D001298 ORTHO05D006340 5.2e-13 77.8 48 68.8
Hund23433 Selenicereus undatus HOM05D000371 ORTHO05D006340 5.2e-13 77.8 48 70.8
Hund23435 Selenicereus undatus HOM05D000371 ORTHO05D006340 5.2e-13 77.8 48 70.8
GSVIVG01015733001 Vitis vinifera HOM05D000371 ORTHO05D006340 5.2e-13 77.8 48 70.8
AUR62027120 Chenopodium quinoa HOM05D000371 ORTHO05D006340 6.8e-13 77.4 58 62.1
Nitab4.5_0002650g0070 Nicotiana tabacum HOM05D000371 ORTHO05D006340 8.8e-13 77.0 48 66.7
MD04G1047400 Malus domestica HOM05D000371 ORTHO05D006340 1.2e-12 76.6 48 66.7
PGSC0003DMG400033579 Solanum tuberosum HOM05D000371 ORTHO05D006340 1.2e-12 76.6 48 68.8
MSTRG.27813 Avicennia marina HOM05D000371 ORTHO05D006340 1.5e-12 76.3 48 66.7
Migut.N01091 Erythranthe guttata HOM05D000371 ORTHO05D006340 1.5e-12 76.3 48 68.8
FvH4_2g11800 Fragaria vesca HOM05D000371 ORTHO05D006340 1.5e-12 76.3 48 64.6
FAN15G0960 Fragaria x ananassa HOM05D000371 ORTHO05D006340 1.5e-12 76.3 48 64.6
PSO541G5676 Papaver somniferum HOM05D007460 ORTHO05D009396 1.5e-12 76.3 46 67.4
RcHm_v2.0_Chr6g0249601 Rosa chinensis HOM05D000371 ORTHO05D006340 1.5e-12 76.3 48 64.6
unitig_62.g23629 Utricularia gibba HOM05D000371 ORTHO05D006340 2.0e-12 75.9 48 68.8
Prupe.8G067900 Prunus persica HOM05D000371 ORTHO05D006340 2.6e-12 75.5 48 64.6
FvH4_3g22200 Fragaria vesca HOM05D000371 ORTHO05D006340 3.4e-12 75.1 55 56.4
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 4.4e-12 74.7 55 56.4
Nn1g05528 Nelumbo nucifera HOM05D000371 ORTHO05D006340 4.4e-12 74.7 56 62.5
Pp3c1_27870 Physcomitrium patens HOM05D000371 ORTHO05D006340 4.4e-12 74.7 48 68.8
Zm00001eb255600 Zea mays HOM05D000371 ORTHO05D006340 4.4e-12 74.7 48 68.8
FAN20G0951 Fragaria x ananassa HOM05D000371 ORTHO05D006340 5.7e-12 74.3 48 62.5
Os02g0760300 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D006340 5.7e-12 74.3 48 66.7
EL10Ac9g22085 Beta vulgaris HOM05D000371 ORTHO05D006340 7.5e-12 73.9 58 60.3
vmacro01851 Vaccinium macrocarpon HOM05D000371 ORTHO05D006340 9.8e-12 73.6 69 53.6
PSO541G0529 Papaver somniferum HOM05D000371 ORTHO05D006340 1.3e-11 73.2 48 64.6
PSO675G6035 Papaver somniferum HOM05D000371 ORTHO05D006340 1.3e-11 73.2 48 64.6
AagrBONN_evm.TU.Sc2ySwM_344.182 Anthoceros agrestis HOM05D000371 ORTHO05D006340 1.7e-11 72.8 50 62.0
Actinidia00294 Actinidia chinensis HOM05D000371 ORTHO05D006340 3.7e-11 71.6 48 64.6
CBR_g19026 Chara braunii HOM05D000371 ORTHO05D006340 1.4e-10 69.7 48 62.5
SMO365G0026 Selaginella moellendorffii HOM05D000371 ORTHO05D006340 1.4e-10 69.7 48 60.4
Glyma.15G056800 Glycine max HOM05D000371 ORTHO05D006340 2.4e-10 68.9 39 74.4
BcaB07g29737 Brassica carinata HOM05D000371 ORTHO05D006340 2.2e-08 62.4 52 63.5
Mapoly0091s0066 Marchantia polymorpha HOM05D000371 ORTHO05D006340 1.1e-07 60.1 45 57.8
PRCOL_00001212 Prasinoderma coloniale HOM05D000371 ORTHO05D006340 1.9e-07 59.3 49 53.1
Lalb_Chr18g0060451 Lupinus albus HOM05D000371 ORTHO05D006340 4.2e-07 58.2 53 50.9
C09p09750 Brassica napus HOM05D000371 ORTHO05D006340 9.4e-07 57.0 29 82.8


User provided reference genes

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