Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 1.7e-91 339.3 172 100.0
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 7.8e-57 224.2 123 97.6
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 3.0e-56 222.2 123 95.9
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 3.6e-54 215.3 123 95.9
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 3.6e-54 215.3 123 95.9
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 3.6e-54 215.3 123 95.9
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 3.6e-54 215.3 123 95.9
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 3.6e-54 215.3 123 95.9
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 3.6e-54 215.3 123 95.9
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 3.6e-54 215.3 123 95.9
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 8.1e-54 214.2 129 91.5
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 8.1e-54 214.2 129 91.5
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-53 213.8 123 95.1
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 1.4e-53 213.4 123 95.1
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 1.5e-52 209.9 123 94.3
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.3e-51 206.8 125 89.6
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.3e-51 206.8 125 89.6
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 1.7e-51 206.5 123 91.9
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 1.7e-51 206.5 123 91.9
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 1.7e-51 206.5 123 91.9
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 1.7e-51 206.5 123 91.9
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.7e-51 206.5 123 91.9
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 1.7e-51 206.5 123 91.9
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.7e-51 206.5 123 91.9
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.7e-51 206.5 123 91.9
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 2.9e-51 205.7 123 92.7
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 2.9e-51 205.7 123 92.7
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 2.9e-51 205.7 123 91.9
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 2.9e-51 205.7 123 91.9
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 6.4e-51 204.5 124 91.1
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 1.1e-50 203.8 123 91.9
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 1.4e-50 203.4 123 91.9
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 1.9e-50 203.0 122 91.0
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 1.9e-50 203.0 122 91.0
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 1.9e-50 203.0 126 89.7
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 4.2e-50 201.8 116 95.7
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 4.2e-50 201.8 116 95.7
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 4.2e-50 201.8 116 95.7
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 4.2e-50 201.8 116 95.7
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 5.4e-50 201.4 116 94.8
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 5.4e-50 201.4 116 94.8
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 5.4e-50 201.4 116 94.8
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 1.2e-49 200.3 123 90.2
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 1.2e-49 200.3 123 90.2
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 2.1e-49 199.5 116 94.8
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 2.1e-49 199.5 116 94.8
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 2.1e-49 199.5 116 94.8
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 2.7e-49 199.1 118 93.2
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 2.7e-49 199.1 118 93.2
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 2.7e-49 199.1 118 93.2
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 2.7e-49 199.1 118 93.2
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 2.7e-49 199.1 118 93.2
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 2.7e-49 199.1 118 93.2
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 2.7e-49 199.1 116 94.0
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 7.9e-49 197.6 121 79.3
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 1.0e-48 197.2 114 95.6
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.3e-48 196.8 123 78.9
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.5e-47 192.6 121 78.5
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 3.3e-47 192.2 118 89.0
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 4.3e-47 191.8 121 86.8
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 7.4e-47 191.0 159 62.3
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 7.4e-47 191.0 159 62.3
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 7.4e-47 191.0 159 62.3
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.7e-46 188.7 119 88.2
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.7e-46 188.7 119 88.2
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 8.1e-46 187.6 122 86.1
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 1.1e-45 187.2 116 88.8
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 5.8e-44 181.4 118 86.4
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 5.8e-44 181.4 118 86.4
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 4.9e-43 178.3 123 82.9
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 4.9e-43 178.3 123 82.9
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 9.3e-42 174.1 123 82.1
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 5.6e-39 164.9 123 69.1
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 1.3e-38 163.7 116 72.4
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 4.8e-38 161.8 110 71.8
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 4.0e-37 158.7 97 80.4
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.9e-37 157.9 123 76.4
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 7.6e-36 154.5 98 78.6
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 1.7e-35 153.3 93 79.6
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 2.9e-35 152.5 95 78.9
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 4.9e-35 151.8 122 68.0
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 8.4e-35 151.0 94 77.7
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 1.4e-34 150.2 118 65.3
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 1.9e-34 149.8 98 87.8
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 1.6e-33 146.7 98 86.7
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 1.6e-33 146.7 98 86.7
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 1.6e-33 146.7 98 86.7
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 3.0e-32 142.5 87 93.1
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 4.3e-31 138.7 89 75.3
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 9.7e-31 137.5 84 92.9
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.3e-30 137.1 121 60.3
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 4.8e-30 135.2 85 90.6
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 2.4e-29 132.9 90 73.3
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 6.9e-29 131.3 106 67.0
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.5e-28 130.2 112 72.3
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 2.2e-27 126.3 116 60.3
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 2.9e-27 125.9 83 74.7
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 2.9e-27 125.9 129 57.4
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 2.5e-26 122.9 77 92.2
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-25 120.6 60 93.3
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 4.6e-25 118.6 60 91.7
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 4.6e-25 118.6 60 91.7
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 4.6e-25 118.6 60 91.7
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 7.9e-25 117.9 77 74.0
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 1.0e-24 117.5 60 90.0
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 4.3e-23 112.1 60 86.7
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 7.4e-23 111.3 82 69.5
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 1.3e-22 110.5 55 92.7
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.2e-22 109.8 55 92.7
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.3e-22 108.2 49 98.0
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 1.4e-21 107.1 53 90.6
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 1.8e-21 106.7 76 67.1
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 2.4e-21 106.3 49 95.9
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 2.4e-21 106.3 49 95.9
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 2.4e-21 106.3 49 95.9
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 2.4e-21 106.3 49 95.9
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 2.4e-21 106.3 124 50.8
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 3.1e-21 105.9 49 95.9
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 9.1e-21 104.4 48 95.8
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 9.1e-21 104.4 48 95.8
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 2.6e-20 102.8 90 56.7
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 5.9e-20 101.7 49 91.8
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.7e-19 100.1 57 82.5
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 8.5e-19 97.8 52 88.5
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 1.9e-18 96.7 49 83.7
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.9e-18 96.7 57 75.4
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 2.1e-17 93.2 57 75.4
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 7.9e-17 91.3 52 82.7
BraSC25t45912Z Brassica rapa HOM05D000533 ORTHO05D006151 1.0e-16 90.9 45 95.6
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.4e-16 90.5 71 60.6
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 8.8e-16 87.8 53 73.6
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 7.4e-15 84.7 48 89.6
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 7.4e-15 84.7 48 81.2
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.1e-13 80.9 40 95.0
BolSC43t60808H Brassica oleracea HOM05D000533 ORTHO05D105757 1.8e-13 80.1 33 100.0
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 6.9e-13 78.2 62 62.9
Hund17909 Selenicereus undatus HOM05D000533 ORTHO05D006151 3.8e-11 72.4 50 68.0
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 6.5e-11 71.6 40 77.5
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 1.1e-10 70.9 56 62.5
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 7.2e-10 68.2 52 63.5
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.4e-08 63.9 29 96.6
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 3.3e-07 59.3 26 100.0
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 2.8e-06 56.2 25 96.0


User provided reference genes

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