Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 2.6e-127 458.8 233 100.0
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 1.2e-124 449.9 237 97.5
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 8.5e-123 443.7 230 98.3
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 2.0e-119 432.6 237 94.9
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 9.2e-109 397.1 234 87.2
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 1.2e-108 396.7 237 87.3
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 5.7e-103 377.9 234 85.5
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 2.2e-102 375.9 205 93.7
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 3.2e-101 372.1 234 84.2
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 2.0e-100 369.4 231 83.1
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 1.9e-82 309.7 236 72.9
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 4.3e-82 308.5 227 70.9
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 1.3e-67 260.4 233 58.8
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 5.1e-67 258.5 227 58.1
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 3.3e-66 255.8 219 61.6
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 4.3e-66 255.4 224 58.5
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 2.8e-65 252.7 229 58.1
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.4e-64 250.4 224 58.0
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 1.8e-64 250.0 230 57.8
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 1.2e-63 247.3 200 65.5
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 2.0e-63 246.5 223 59.2
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 2.0e-63 246.5 212 60.4
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 3.4e-63 245.7 223 57.8
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 5.8e-63 245.0 200 63.5
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 5.8e-63 245.0 196 65.3
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 1.3e-62 243.8 229 59.0
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 1.7e-62 243.4 223 58.3
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 2.9e-62 242.7 219 59.4
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 3.8e-62 242.3 223 58.7
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 6.4e-62 241.5 224 56.2
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 1.1e-61 240.7 213 61.0
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 4.2e-61 238.8 200 62.5
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 7.1e-61 238.0 224 57.6
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 7.1e-61 238.0 223 57.0
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 7.1e-61 238.0 223 56.5
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 9.3e-61 237.7 223 60.5
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 1.6e-60 236.9 230 54.3
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 2.1e-60 236.5 222 56.8
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 4.6e-60 235.3 224 55.4
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 1.0e-59 234.2 223 56.1
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 1.3e-59 233.8 225 55.6
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 1.9e-58 229.9 235 52.3
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 2.5e-58 229.6 205 58.0
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 2.1e-57 226.5 231 53.2
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 3.7e-57 225.7 223 56.1
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 1.8e-56 223.4 223 56.5
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 4.0e-56 222.2 223 56.1
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 1.2e-55 220.7 216 56.0
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 3.4e-55 219.2 226 56.6
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 5.8e-55 218.4 225 57.3
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 9.9e-55 217.6 210 58.6
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 1.3e-54 217.2 223 55.2
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 1.3e-54 217.2 171 64.3
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 1.4e-53 213.8 222 50.5
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 1.1e-50 204.1 223 48.0
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 4.0e-48 195.7 174 59.2
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 4.0e-48 195.7 174 59.2
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 5.3e-48 195.3 186 56.5
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 1.2e-47 194.1 113 87.6
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 1.3e-46 190.7 203 45.3
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 1.4e-45 187.2 118 83.1
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 3.2e-45 186.0 227 48.0
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 1.8e-43 180.3 185 54.6
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 3.9e-43 179.1 200 51.5
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 1.1e-40 171.0 200 50.0
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 3.1e-40 169.5 226 44.2
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 9.0e-40 167.9 152 56.6
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 2.5e-37 159.8 130 63.1
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 2.7e-36 156.4 229 41.5
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 7.9e-36 154.8 110 65.5
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 5.1e-35 152.1 227 40.5
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 9.7e-34 147.9 157 52.9
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 8.2e-33 144.8 122 59.0
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 8.2e-33 144.8 122 59.0
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 2.4e-32 143.3 134 57.5
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 5.9e-31 138.7 133 60.9
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 6.5e-30 135.2 163 45.4
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 4.2e-29 132.5 121 56.2
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 1.2e-28 131.0 126 57.9
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 2.7e-28 129.8 132 53.8
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 6.1e-28 128.6 122 53.3
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.0e-27 126.3 115 54.8
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 6.7e-27 125.2 111 50.5
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 4.4e-26 122.5 227 39.6
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.3e-25 120.9 132 51.5
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 1.8e-24 117.1 107 58.9
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 2.4e-24 116.7 108 58.3
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 2.6e-23 113.2 114 56.1
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 4.5e-23 112.5 112 53.6
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 5.9e-23 112.1 131 51.1
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 1.8e-19 100.5 225 29.3
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.9e-19 99.4 96 52.1
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 6.7e-19 98.6 68 69.1
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.3e-17 94.4 117 50.4
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 2.2e-17 93.6 102 47.1
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.1e-16 89.7 89 50.6
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 7.0e-16 88.6 76 63.2
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 5.9e-15 85.5 63 66.7
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 2.9e-14 83.2 71 63.4
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 4.7e-12 75.9 87 43.7
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 2.0e-10 70.5 182 26.4
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 4.4e-10 69.3 100 34.0
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 7.7e-07 58.5 79 38.0


User provided reference genes

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