Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 5.0e-42 174.1 92 100.0
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 5.7e-30 134.0 79 89.9
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 2.4e-12 75.5 71 62.0
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 1.6e-11 72.8 73 61.6
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-11 72.4 73 61.6
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 3.5e-11 71.6 73 58.9
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 3.5e-11 71.6 73 58.9
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 3.5e-11 71.6 73 61.6
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 5.9e-11 70.9 73 58.9
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 5.9e-11 70.9 73 58.9
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 5.9e-11 70.9 73 58.9
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 7.8e-11 70.5 73 57.5
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 7.8e-11 70.5 37 97.3
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 7.8e-11 70.5 73 57.5
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 7.8e-11 70.5 73 57.5
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 1.7e-10 69.3 73 56.2
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 2.3e-10 68.9 73 58.9
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 2.3e-10 68.9 73 58.9
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 2.3e-10 68.9 73 56.2
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 2.3e-10 68.9 73 58.9
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 2.3e-10 68.9 73 58.9
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 2.3e-10 68.9 73 56.2
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 8.6e-10 67.0 73 56.2
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.5e-09 66.2 70 57.1
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 4.3e-09 64.7 73 53.4
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 7.3e-09 63.9 73 54.8
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 7.3e-09 63.9 73 54.8
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.2e-08 63.2 69 50.7
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 1.6e-08 62.8 70 54.3
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 2.1e-08 62.4 70 55.7
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 3.6e-08 61.6 73 52.1
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.6e-08 61.6 69 50.7
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 8.0e-08 60.5 66 53.0
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 8.0e-08 60.5 73 50.7
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 8.0e-08 60.5 69 52.2
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 1.0e-07 60.1 86 45.3
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 1.0e-07 60.1 69 49.3
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.0e-07 60.1 66 53.0
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 1.0e-07 60.1 73 50.7
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.0e-07 60.1 73 50.7
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.0e-07 60.1 73 50.7
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 1.4e-07 59.7 66 53.0
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.4e-07 59.7 69 50.7
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 1.4e-07 59.7 69 50.7
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.8e-07 59.3 73 49.3
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 1.8e-07 59.3 42 73.8
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.8e-07 59.3 73 46.6
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.3e-07 58.9 68 51.5
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 2.3e-07 58.9 73 47.9
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 3.0e-07 58.5 73 50.7
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 4.0e-07 58.2 70 50.0
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 4.0e-07 58.2 69 49.3
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 5.2e-07 57.8 69 49.3
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 5.2e-07 57.8 70 48.6
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 6.8e-07 57.4 69 52.2
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 6.8e-07 57.4 69 46.4
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 6.8e-07 57.4 45 66.7
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 6.8e-07 57.4 69 49.3
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 8.9e-07 57.0 73 45.2
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 8.9e-07 57.0 66 48.5
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 8.9e-07 57.0 70 45.7
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 8.9e-07 57.0 37 73.0
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 1.2e-06 56.6 65 52.3
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 1.2e-06 56.6 68 47.1
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.2e-06 56.6 73 45.2
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.2e-06 56.6 37 75.7
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.2e-06 56.6 37 75.7
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.2e-06 56.6 65 49.2
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 1.2e-06 56.6 73 46.6
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.5e-06 56.2 73 45.2
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.5e-06 56.2 73 45.2
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 1.5e-06 56.2 73 45.2
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.5e-06 56.2 73 47.9
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 1.5e-06 56.2 73 46.6
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 2.0e-06 55.8 69 47.8
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 2.0e-06 55.8 73 46.6
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 2.0e-06 55.8 37 70.3
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 2.0e-06 55.8 37 70.3
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 2.6e-06 55.5 37 75.7
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 2.6e-06 55.5 37 75.7
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 2.6e-06 55.5 37 78.4
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.6e-06 55.5 41 70.7
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.6e-06 55.5 37 75.7
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.6e-06 55.5 37 75.7
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 2.6e-06 55.5 37 75.7
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 2.6e-06 55.5 69 49.3
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 2.6e-06 55.5 74 45.9
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 3.4e-06 55.1 73 43.8
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 3.4e-06 55.1 70 45.7
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 3.4e-06 55.1 37 73.0
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 4.4e-06 54.7 37 75.7
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 4.4e-06 54.7 65 49.2
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 4.4e-06 54.7 65 49.2
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 5.7e-06 54.3 68 47.1
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 5.7e-06 54.3 70 45.7
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.7e-06 54.3 41 68.3
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 5.7e-06 54.3 65 49.2
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 5.7e-06 54.3 65 49.2
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 7.5e-06 53.9 66 43.9
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 7.5e-06 53.9 73 45.2
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 7.5e-06 53.9 41 68.3
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 9.8e-06 53.5 73 46.6


User provided reference genes

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