Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p31700 Brassica napus HOM05D003668 ORTHO05D004242 2.4e-164 582.0 284 100.0
BolC7t43709H Brassica oleracea HOM05D003668 ORTHO05D004242 3.7e-160 568.2 277 100.0
Thhalv10000862m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 2.1e-131 472.6 287 80.1
BcaC03g17018 Brassica carinata HOM05D003668 ORTHO05D004242 8.8e-130 467.2 287 79.8
CARHR143800 Cardamine hirsuta HOM05D003668 ORTHO05D004242 1.8e-127 459.5 283 79.2
Sp2g12730 Schrenkiella parvula HOM05D003668 ORTHO05D004242 2.4e-127 459.1 285 78.9
BolC2t11016H Brassica oleracea HOM05D003668 ORTHO05D004242 4.1e-127 458.4 283 79.5
BraA02t08194Z Brassica rapa HOM05D003668 ORTHO05D004242 5.3e-127 458.0 283 79.5
A02p31850 Brassica napus HOM05D003668 ORTHO05D004242 7.0e-127 457.6 280 80.0
C02p49290 Brassica napus HOM05D003668 ORTHO05D004242 5.9e-126 454.5 280 79.3
BcaB07g30412 Brassica carinata HOM05D003668 ORTHO05D004242 3.0e-122 442.2 288 76.4
Carub.0005s0025 Capsella rubella HOM05D003668 ORTHO05D004242 1.1e-121 440.3 287 75.3
Aa31LG2G8640 Aethionema arabicum HOM05D003668 ORTHO05D004242 4.1e-119 431.8 282 72.7
AL5G10220 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 2.9e-117 425.6 283 73.9
AT2G01270 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 1.0e-114 417.2 283 72.4
AT1G15020 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 8.3e-112 407.5 281 69.0
BcaB02g06567 Brassica carinata HOM05D003668 ORTHO05D004242 1.4e-111 406.8 281 69.0
Sp1g13410 Schrenkiella parvula HOM05D003668 ORTHO05D004242 1.4e-111 406.8 281 68.7
AL1G27090 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 5.4e-111 404.8 281 68.3
CARHR015560 Cardamine hirsuta HOM05D003668 ORTHO05D004242 9.1e-111 404.1 281 68.3
A09p61640 Brassica napus HOM05D003668 ORTHO05D004242 7.5e-105 384.4 283 65.4
BraA09t41536Z Brassica rapa HOM05D003668 ORTHO05D004242 7.5e-105 384.4 283 65.4
Aa31LG1G80 Aethionema arabicum HOM05D003668 ORTHO05D004242 1.7e-104 383.3 289 64.7
BolC8t52070H Brassica oleracea HOM05D003668 ORTHO05D004242 3.7e-104 382.1 283 65.0
C05p13170 Brassica napus HOM05D003668 ORTHO05D004242 5.4e-103 378.3 284 64.8
C08p45220 Brassica napus HOM05D003668 ORTHO05D004242 5.4e-103 378.3 283 64.3
BraA06t24284Z Brassica rapa HOM05D003668 ORTHO05D004242 7.0e-103 377.9 285 64.9
Psat6g222240 Pisum sativum HOM05D003668 ORTHO05D004242 7.0e-103 377.9 285 63.5
BcaB02g06571 Brassica carinata HOM05D003668 ORTHO05D004242 2.0e-102 376.3 282 64.9
A06p11040 Brassica napus HOM05D003668 ORTHO05D004242 2.0e-102 376.3 285 64.9
Carub.0001s1479 Capsella rubella HOM05D003668 ORTHO05D004242 2.7e-102 375.9 283 64.3
Thhalv10007339m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 4.5e-102 375.2 281 64.8
BolC5t30053H Brassica oleracea HOM05D003668 ORTHO05D004242 7.7e-102 374.4 284 64.4
Dinv16191 Davidia involucrata HOM05D003668 ORTHO05D004242 1.3e-101 373.6 293 61.4
Haze_11039 Corylus avellana HOM05D003668 ORTHO05D004242 2.9e-101 372.5 288 62.5
BcaC05g25439 Brassica carinata HOM05D003668 ORTHO05D004242 5.0e-101 371.7 284 64.1
Medtr1g108590 Medicago truncatula HOM05D003668 ORTHO05D004242 1.1e-100 370.5 278 64.0
TPR.G4938 Trifolium pratense HOM05D003668 ORTHO05D004242 2.5e-100 369.4 278 63.3
MD13G1028500 Malus domestica HOM05D003668 ORTHO05D004242 3.3e-100 369.0 281 62.3
Thecc.02G278000 Theobroma cacao HOM05D003668 ORTHO05D004242 7.2e-100 367.9 301 60.1
RcHm_v2.0_Chr4g0440821 Rosa chinensis HOM05D003668 ORTHO05D004242 9.5e-100 367.5 286 60.8
Phvul.007G035900 Phaseolus vulgaris HOM05D003668 ORTHO05D004242 3.6e-99 365.5 285 62.1
CSS0003505 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 1.0e-98 364.0 293 59.7
CiPaw.05G247100 Carya illinoinensis HOM05D003668 ORTHO05D004242 1.8e-98 363.2 288 61.5
Duzib268G0050 Durio zibethinus HOM05D003668 ORTHO05D004242 4.0e-98 362.1 286 60.8
Cc11_g09050 Coffea canephora HOM05D003668 ORTHO05D004242 6.8e-98 361.3 290 59.3
FAN12G3685 Fragaria x ananassa HOM05D003668 ORTHO05D004242 8.9e-98 360.9 285 60.0
FAN07G1823 Fragaria x ananassa HOM05D003668 ORTHO05D004242 1.5e-97 360.1 285 59.6
Prupe.1G321800 Prunus persica HOM05D003668 ORTHO05D004242 2.0e-97 359.8 281 61.2
FvH4_4g32120 Fragaria vesca HOM05D003668 ORTHO05D004242 4.4e-97 358.6 285 59.3
arahy.Tifrunner.gnm1.ann1.P86RCB Arachis hypogaea HOM05D003668 ORTHO05D004242 5.7e-97 358.2 277 61.7
COL.COLO4_20446 Corchorus olitorius HOM05D003668 ORTHO05D004242 5.7e-97 358.2 284 60.6
Manes.06G062100 Manihot esculenta HOM05D003668 ORTHO05D004242 9.8e-97 357.5 284 60.9
SalBow8G3356 Salvia bowleyana HOM05D003668 ORTHO05D004242 1.3e-96 357.1 282 61.0
arahy.Tifrunner.gnm1.ann1.V9FAYY Arachis hypogaea HOM05D003668 ORTHO05D004242 1.7e-96 356.7 277 61.4
Dinv05883 Davidia involucrata HOM05D003668 ORTHO05D004242 1.7e-96 356.7 286 59.4
GSVIVG01011788001 Vitis vinifera HOM05D003668 ORTHO05D004242 1.7e-96 356.7 293 57.7
Eucgr.B02887 Eucalyptus grandis HOM05D003668 ORTHO05D004242 2.2e-96 356.3 296 58.8
Lj5g0008039 Lotus japonicus HOM05D003668 ORTHO05D004242 2.2e-96 356.3 277 62.5
Ca_11103_v3 Cicer arietinum L. HOM05D003668 ORTHO05D004242 2.9e-96 355.9 278 62.6
Glyma.20G124700 Glycine max HOM05D003668 ORTHO05D004242 2.9e-96 355.9 277 61.7
Lalb_Chr06g0165651 Lupinus albus HOM05D003668 ORTHO05D004242 4.9e-96 355.1 286 60.5
Gohir.A03G123600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 8.3e-96 354.4 293 59.7
Sabra08G0096100 Salix brachista HOM05D003668 ORTHO05D004242 8.3e-96 354.4 301 58.5
Duzib251G0842 Durio zibethinus HOM05D003668 ORTHO05D004242 1.4e-95 353.6 287 59.2
CSS0008273 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 1.8e-95 353.2 286 59.1
FAN22G1857 Fragaria x ananassa HOM05D003668 ORTHO05D004242 1.8e-95 353.2 278 60.1
Gohir.A05G309600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 1.8e-95 353.2 293 57.3
VMungo0720G2186 Vigna mungo HOM05D003668 ORTHO05D004242 1.8e-95 353.2 277 62.1
Oeu004307.1 Olea europaea HOM05D003668 ORTHO05D004242 2.4e-95 352.8 278 59.0
TAR622G1157 Trochodendron aralioides HOM05D003668 ORTHO05D004242 2.4e-95 352.8 287 58.5
PGR102G1044 Punica granatum HOM05D003668 ORTHO05D004242 3.2e-95 352.4 287 59.9
Sabra10G0085600 Salix brachista HOM05D003668 ORTHO05D004242 3.2e-95 352.4 292 58.6
Potri.008G127300 Populus trichocarpa HOM05D003668 ORTHO05D004242 4.1e-95 352.1 301 57.5
CiPaw.06G013800 Carya illinoinensis HOM05D003668 ORTHO05D004242 5.4e-95 351.7 285 60.4
Glyma.10G265900 Glycine max HOM05D003668 ORTHO05D004242 5.4e-95 351.7 277 61.0
Gohir.D05G310500 Gossypium hirsutum HOM05D003668 ORTHO05D004242 7.0e-95 351.3 293 57.7
Potri.010G115700 Populus trichocarpa HOM05D003668 ORTHO05D004242 9.2e-95 350.9 308 56.5
Solyc04g007610.3 Solanum lycopersicum HOM05D003668 ORTHO05D004242 9.2e-95 350.9 292 58.2
Actinidia14944 Actinidia chinensis HOM05D003668 ORTHO05D004242 1.2e-94 350.5 286 58.0
Sopen04g002690 Solanum pennellii HOM05D003668 ORTHO05D004242 2.0e-94 349.7 292 57.9
Migut.L00659 Erythranthe guttata HOM05D003668 ORTHO05D004242 2.7e-94 349.4 283 59.0
Lj6C749G7 Lonicera japonica HOM05D003668 ORTHO05D004242 3.5e-94 349.0 283 59.7
Gohir.D02G146200 Gossypium hirsutum HOM05D003668 ORTHO05D004242 4.6e-94 348.6 286 60.5
QL01p002314 Quercus lobata HOM05D003668 ORTHO05D004242 4.6e-94 348.6 279 59.1
Nitab4.5_0004692g0030 Nicotiana tabacum HOM05D003668 ORTHO05D004242 5.9e-94 348.2 292 57.2
CAN.G359.7 Capsicum annuum HOM05D003668 ORTHO05D004242 7.8e-94 347.8 297 56.9
Atru.chr11.362 Acer truncatum HOM05D003668 ORTHO05D004242 1.3e-93 347.1 286 59.4
Gorai.005G163600 Gossypium raimondii HOM05D003668 ORTHO05D004242 1.3e-93 347.1 286 59.4
TWI79G0359 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 2.3e-93 346.3 288 58.7
Hma1.2p1_0601F.1_g187240 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 3.0e-93 345.9 294 55.8
Nitab4.5_0000414g0090 Nicotiana tabacum HOM05D003668 ORTHO05D004242 3.0e-93 345.9 290 56.9
CsaV3_5G034880 Cucumis sativus L. HOM05D003668 ORTHO05D004242 8.6e-93 344.4 283 58.7
Gorai.009G331400 Gossypium raimondii HOM05D003668 ORTHO05D004242 1.1e-92 344.0 286 57.7
SGA_v2.0_scaffold50G18529 Striga asiatica HOM05D003668 ORTHO05D004242 1.5e-92 343.6 274 58.8
CANSAT01G1684 Cannabis sativa HOM05D003668 ORTHO05D004242 2.5e-92 342.8 281 58.7
Sc11g0004080 Simmondsia chinensis HOM05D003668 ORTHO05D004242 2.5e-92 342.8 281 59.1
Peaxi162Scf00119g01535 Petunia axillaris HOM05D003668 ORTHO05D004242 7.3e-92 341.3 285 56.1
MELO3C012298.2 Cucumis melo HOM05D003668 ORTHO05D004242 2.1e-91 339.7 279 58.4
TWI31G1185 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 2.1e-91 339.7 286 58.7
Cpa.g.sc65.109 Carica papaya HOM05D003668 ORTHO05D004242 2.8e-91 339.3 233 67.4
Migut.L00756 Erythranthe guttata HOM05D003668 ORTHO05D004242 8.0e-91 337.8 278 57.9
PGSC0003DMG400005962 Solanum tuberosum HOM05D003668 ORTHO05D004242 1.8e-90 336.7 289 56.1
CSS0021848 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 3.1e-90 335.9 283 56.2
Lalb_Chr02g0145561 Lupinus albus HOM05D003668 ORTHO05D004242 3.1e-90 335.9 279 59.9
Manes.14G135800 Manihot esculenta HOM05D003668 ORTHO05D004242 3.1e-90 335.9 281 58.4
ECA246G0677 Erigeron canadensis HOM05D003668 ORTHO05D004242 4.0e-90 335.5 297 54.5
Nitab4.5_0004092g0020 Nicotiana tabacum HOM05D003668 ORTHO05D004242 1.5e-89 333.6 284 56.0
Sed0001529 Sechium edule HOM05D003668 ORTHO05D004242 2.0e-89 333.2 275 55.6
DCAR_030206 Daucus carota HOM05D003668 ORTHO05D004242 2.6e-89 332.8 284 55.3
Lj3A875T61 Lonicera japonica HOM05D003668 ORTHO05D004242 1.7e-88 330.1 279 57.0
Nn4g24060 Nelumbo nucifera HOM05D003668 ORTHO05D004242 1.7e-88 330.1 286 55.6
Peaxi162Scf00205g00617 Petunia axillaris HOM05D003668 ORTHO05D004242 2.2e-88 329.7 300 54.7
CAN.G1693.10 Capsicum annuum HOM05D003668 ORTHO05D004242 2.9e-88 329.3 284 57.4
HanXRQChr15g0477351 Helianthus annuus HOM05D003668 ORTHO05D004242 2.9e-88 329.3 288 54.5
Nn3g18032 Nelumbo nucifera HOM05D003668 ORTHO05D004242 8.3e-88 327.8 290 54.1
Lsat_1_v5_gn_3_54180 Lactuca sativa HOM05D003668 ORTHO05D004242 1.1e-87 327.4 287 56.1
Aqoxy3G00162 Aquilegia oxysepala HOM05D003668 ORTHO05D004242 7.0e-87 324.7 291 54.0
PSO017G0236 Papaver somniferum HOM05D003668 ORTHO05D004242 7.0e-87 324.7 290 54.1
PSO478G1788 Papaver somniferum HOM05D003668 ORTHO05D004242 6.0e-86 321.6 286 53.8
EL10Ac6g14242 Beta vulgaris HOM05D003668 ORTHO05D004242 1.0e-85 320.9 278 56.5
Sed0014721 Sechium edule HOM05D003668 ORTHO05D004242 1.0e-85 320.9 275 54.2
ATR0326G075 Amborella trichopoda HOM05D003668 ORTHO05D004242 1.3e-85 320.5 289 55.0
MSTRG.884 Avicennia marina HOM05D003668 ORTHO05D004242 1.1e-84 317.4 285 54.0
Oeu044332.1 Olea europaea HOM05D003668 ORTHO05D004242 9.5e-84 314.3 289 51.9
DCAR_007279 Daucus carota HOM05D003668 ORTHO05D004242 3.6e-83 312.4 285 52.3
Migut.E00406 Erythranthe guttata HOM05D003668 ORTHO05D004242 6.2e-83 311.6 279 55.2
Nitab4.5_0001648g0080 Nicotiana tabacum HOM05D003668 ORTHO05D004242 6.2e-83 311.6 270 55.9
CDE07G1523 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 3.1e-82 309.3 307 48.9
AUR62014140 Chenopodium quinoa HOM05D003668 ORTHO05D004242 5.2e-82 308.5 313 49.5
Sabra10G0087300 Salix brachista HOM05D003668 ORTHO05D004242 2.6e-81 306.2 339 47.8
TAR629G1414 Trochodendron aralioides HOM05D003668 ORTHO05D004242 3.4e-81 305.8 230 60.9
ClCG05G022250 Citrullus lanatus HOM05D003668 ORTHO05D004242 4.4e-81 305.4 277 54.5
AUR62041242 Chenopodium quinoa HOM05D003668 ORTHO05D004242 9.8e-81 304.3 327 47.4
HanXRQChr15g0488541 Helianthus annuus HOM05D003668 ORTHO05D004242 5.4e-79 298.5 288 50.0
MBI05_g00408_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 1.6e-78 297.0 283 51.9
CDE06G0369 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 2.1e-78 296.6 227 58.6
HPP92_020133 Vanilla planifolia HOM05D003668 ORTHO05D004242 4.6e-78 295.4 286 50.0
Lsat_1_v5_gn_8_42960 Lactuca sativa HOM05D003668 ORTHO05D004242 6.6e-77 291.6 276 52.2
Ciclev10015050m.g Citrus clementina HOM05D003668 ORTHO05D004242 2.5e-76 289.7 229 60.3
HanXRQChr08g0212821 Helianthus annuus HOM05D003668 ORTHO05D004242 2.5e-76 289.7 287 51.6
Rhsim09G0101100 Rhododendron simsii HOM05D003668 ORTHO05D004242 1.6e-75 287.0 373 43.4
vmacro10624 Vaccinium macrocarpon HOM05D003668 ORTHO05D004242 1.4e-74 283.9 352 44.6
MBI10_g37695_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 5.2e-74 282.0 227 57.7
Dinv09244 Davidia involucrata HOM05D003668 ORTHO05D004242 2.2e-72 276.6 193 65.8
SMO092G0001 Selaginella moellendorffii HOM05D003668 ORTHO05D004242 1.5e-60 237.3 283 43.1
Zm00001eb295030 Zea mays HOM05D003668 ORTHO05D004242 4.3e-60 235.7 192 54.2
ECA233G5938 Erigeron canadensis HOM05D003668 ORTHO05D004242 1.4e-55 220.7 294 41.2
Mapoly0013s0166 Marchantia polymorpha HOM05D003668 ORTHO05D004242 1.5e-52 210.7 305 38.7
unitig_27.g25262 Utricularia gibba HOM05D003668 ORTHO05D004242 4.5e-49 199.1 143 60.1
SMO351G0322 Selaginella moellendorffii HOM05D003668 ORTHO05D004242 2.2e-48 196.8 281 39.9
Pp3c20_23660 Physcomitrium patens HOM05D003668 ORTHO05D004242 9.3e-47 191.4 269 37.5
CBR_g58693 Chara braunii HOM05D003668 ORTHO05D004242 5.1e-45 185.7 324 32.4
Pp3c21_14060 Physcomitrium patens HOM05D003668 ORTHO05D004242 9.3e-39 164.9 274 36.5
Hma1.2p1_0114F.1_g055230 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 1.3e-35 154.5 123 60.2
Lalb_Chr21g0308531 Lupinus albus HOM05D003668 ORTHO05D004242 5.9e-33 145.6 181 45.3
Pp3c19_11370 Physcomitrium patens HOM05D003668 ORTHO05D004242 3.0e-29 133.3 287 29.3
Pp3c1_7010 Physcomitrium patens HOM05D003668 ORTHO05D004242 8.7e-29 131.7 231 32.0
Cre04.g230928 Chlamydomonas reinhardtii HOM05D003668 ORTHO05D004242 1.4e-26 124.4 162 40.7
PRCOL_00000170 Prasinoderma coloniale HOM05D003668 ORTHO05D004242 2.0e-25 120.6 187 35.8
MCO15G061 Micromonas commoda HOM05D003668 ORTHO05D004242 1.4e-23 114.4 152 40.8
Medtr1g108520 Medicago truncatula HOM05D003668 ORTHO05D004242 2.4e-18 97.1 145 39.3
HPP92_020123 Vanilla planifolia HOM05D003668 ORTHO05D004242 6.5e-16 89.0 126 40.5
Medtr0121s0090 Medicago truncatula HOM05D003668 ORTHO05D004242 2.1e-14 84.0 82 56.1
SHI16331 Sapria himalayana HOM05D000002 ORTHO05D000001 6.1e-14 82.4 50 72.0
HanXRQChr02g0056061 Helianthus annuus HOM05D003668 ORTHO05D221127 1.1e-10 71.6 111 38.7
Nn6g35717 Nelumbo nucifera HOM05D003668 ORTHO05D004242 7.0e-10 68.9 47 59.6
Lalb_Chr21g0308541 Lupinus albus HOM05D003668 ORTHO05D004242 4.5e-09 66.2 82 41.5


User provided reference genes

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