Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 5.1e-96 354.4 174 100.0
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 4.9e-83 311.2 175 92.6
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 3.2e-82 308.5 175 92.0
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-79 300.1 168 91.7
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 1.1e-77 293.5 174 88.5
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.0e-76 289.3 174 84.5
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 4.2e-74 281.6 174 82.8
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 4.2e-74 281.6 174 82.8
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 3.9e-72 275.0 167 86.2
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 6.7e-72 274.2 175 82.3
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 3.4e-68 261.9 171 80.7
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 3.4e-68 261.9 171 80.7
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.5e-66 255.8 174 77.0
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 5.5e-66 254.6 174 77.0
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 1.6e-65 253.1 174 75.3
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.9e-64 248.4 166 77.1
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-63 246.9 147 84.4
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 5.5e-58 228.0 177 68.4
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 2.0e-52 209.5 176 64.2
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.2e-51 206.1 176 62.5
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 7.2e-50 201.1 175 62.3
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 7.2e-50 201.1 175 62.3
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 2.1e-49 199.5 175 62.3
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.7e-49 199.1 177 63.3
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 3.9e-48 195.3 177 62.1
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 1.5e-47 193.4 176 60.8
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 1.5e-47 193.4 176 61.9
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 3.3e-47 192.2 176 60.2
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 9.7e-47 190.7 176 60.2
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 2.2e-46 189.5 169 59.8
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 2.8e-46 189.1 165 61.8
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 3.7e-46 188.7 169 59.2
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 4.8e-46 188.3 176 60.2
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 6.3e-46 188.0 97 89.7
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 9.1e-45 184.1 158 60.1
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 1.6e-44 183.3 177 59.9
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 5.2e-40 168.3 150 58.7
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 8.2e-38 161.0 162 54.9
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 7.0e-37 157.9 160 55.6
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 7.0e-37 157.9 160 55.6
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 7.0e-37 157.9 153 57.5
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 7.0e-37 157.9 159 54.7
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 7.0e-37 157.9 137 59.1
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.0e-36 156.4 161 52.2
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 3.5e-36 155.6 160 53.8
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 4.5e-36 155.2 162 53.7
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 7.7e-36 154.5 161 51.6
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.7e-35 153.3 138 54.3
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 4.2e-34 148.7 162 51.2
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 4.2e-34 148.7 162 51.2
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 7.2e-34 147.9 162 51.2
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 7.2e-34 147.9 162 51.2
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 7.2e-34 147.9 162 51.2
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 3.6e-33 145.6 157 51.0
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 5.2e-32 141.7 151 53.0
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 8.3e-30 134.4 162 46.9
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 4.5e-28 128.6 169 44.4
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 9.5e-26 120.9 149 40.9
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 3.6e-25 119.0 161 39.8
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 4.7e-25 118.6 145 43.4
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.4e-24 117.1 141 44.0
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 1.4e-24 117.1 169 40.8
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.8e-24 116.7 170 40.0
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 1.8e-24 116.7 145 41.4
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 1.8e-24 116.7 182 41.8
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 3.0e-24 115.9 138 42.8
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 4.0e-24 115.5 176 37.5
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 8.9e-24 114.4 183 41.5
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 8.9e-24 114.4 151 39.1
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 8.9e-24 114.4 150 40.0
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 8.9e-24 114.4 164 39.6
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.2e-23 114.0 146 46.6
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.2e-23 114.0 138 44.2
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.5e-23 113.6 187 37.4
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 2.6e-23 112.8 165 37.6
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 3.4e-23 112.5 156 40.4
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 3.4e-23 112.5 156 39.7
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 4.4e-23 112.1 147 45.6
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 4.4e-23 112.1 169 39.1
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 5.7e-23 111.7 87 66.7
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 5.7e-23 111.7 175 39.4
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 5.7e-23 111.7 172 38.4
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 5.7e-23 111.7 163 38.7
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 5.7e-23 111.7 150 40.7
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 7.5e-23 111.3 145 42.1
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 7.5e-23 111.3 136 43.4
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 7.5e-23 111.3 168 40.5
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 9.8e-23 110.9 173 40.5
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 9.8e-23 110.9 150 39.3
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 1.3e-22 110.5 165 36.4
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.3e-22 110.5 163 38.7
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 1.7e-22 110.2 174 39.1
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.7e-22 110.2 185 34.1
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 1.7e-22 110.2 144 39.6
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 2.2e-22 109.8 146 40.4
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 2.8e-22 109.4 139 42.4
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 2.8e-22 109.4 166 41.6
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 3.7e-22 109.0 158 37.3
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 3.7e-22 109.0 143 44.1
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 3.7e-22 109.0 167 40.1
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.7e-22 109.0 132 43.2
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 4.9e-22 108.6 166 37.3
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 4.9e-22 108.6 132 43.2
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 6.3e-22 108.2 175 38.3
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 6.3e-22 108.2 166 40.4
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 6.3e-22 108.2 142 39.4
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 8.3e-22 107.8 170 39.4
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 8.3e-22 107.8 169 37.3
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 1.1e-21 107.5 146 44.5
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 1.1e-21 107.5 148 41.9
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 1.1e-21 107.5 142 41.5
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 1.4e-21 107.1 171 39.2
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.4e-21 107.1 159 38.4
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.4e-21 107.1 159 38.4
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 1.8e-21 106.7 140 44.3
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 2.4e-21 106.3 179 36.9
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 2.4e-21 106.3 151 38.4
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 2.4e-21 106.3 177 40.1
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 3.1e-21 105.9 168 35.1
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 5.4e-21 105.1 136 40.4
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 7.0e-21 104.8 142 41.5
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 9.2e-21 104.4 141 39.0
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 9.2e-21 104.4 141 39.0
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 9.2e-21 104.4 159 40.3
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 9.2e-21 104.4 141 39.7
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 1.2e-20 104.0 171 36.8
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.6e-20 103.6 169 36.1
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 2.0e-20 103.2 178 36.5
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 2.0e-20 103.2 172 41.3
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 2.0e-20 103.2 141 38.3
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 2.0e-20 103.2 149 36.9
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 2.7e-20 102.8 142 40.1
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 3.5e-20 102.4 150 41.3
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 4.5e-20 102.1 142 40.8
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 4.5e-20 102.1 144 39.6
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 4.5e-20 102.1 150 36.7
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 4.5e-20 102.1 135 41.5
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 5.9e-20 101.7 164 42.1
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 7.8e-20 101.3 146 44.5
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 7.8e-20 101.3 169 37.3
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 7.8e-20 101.3 194 36.1
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.0e-19 100.9 145 43.4
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.3e-19 100.5 143 39.9
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.3e-19 100.5 144 38.2
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 1.3e-19 100.5 166 38.6
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.7e-19 100.1 179 34.1
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 2.3e-19 99.8 146 44.5
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.9e-19 99.4 179 34.6
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.9e-19 99.4 179 34.6
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 2.9e-19 99.4 142 36.6
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 3.8e-19 99.0 144 41.7
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 5.0e-19 98.6 144 41.7
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 6.6e-19 98.2 170 37.1
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 1.1e-18 97.4 148 43.2
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 1.5e-18 97.1 178 33.1
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.5e-18 97.1 141 39.7
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 1.9e-18 96.7 176 34.7
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.5e-18 96.3 159 37.7
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 2.5e-18 96.3 167 37.7
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 2.5e-18 96.3 148 39.9
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.5e-18 96.3 168 36.9
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.5e-18 96.3 199 34.7
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 3.3e-18 95.9 170 37.6
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 3.3e-18 95.9 145 35.2
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 7.3e-18 94.7 146 41.8
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 9.5e-18 94.4 186 35.5
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 1.6e-17 93.6 166 36.1
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 2.8e-17 92.8 138 38.4
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 2.8e-17 92.8 179 34.1
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 4.7e-17 92.0 167 38.3
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 8.9e-16 87.8 150 35.3
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.2e-15 87.4 140 37.9
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.2e-15 87.4 148 35.1
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 2.0e-15 86.7 133 36.1
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 7.5e-15 84.7 88 45.5
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 4.9e-14 82.0 100 38.0
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 1.4e-13 80.5 173 31.8
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 3.2e-13 79.3 63 60.3
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 7.0e-13 78.2 61 62.3
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.7e-12 76.3 98 45.9
Glyma.08G251500 Glycine max HOM05D003328 ORTHO05D003722 6.4e-06 55.1 121 30.6


User provided reference genes

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