Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 6.3e-151 537.3 259 100.0
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 3.5e-149 531.6 259 98.8
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 2.9e-140 501.9 259 93.4
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 8.0e-130 467.2 242 93.4
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 2.0e-117 426.0 245 83.3
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 2.4e-94 349.4 253 67.2
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 3.5e-93 345.5 249 66.7
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 3.5e-93 345.5 249 66.7
C07p31250 Brassica napus HOM05D008086 ORTHO05D004972 7.3e-91 337.8 249 66.3
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 2.8e-90 335.9 251 66.1
BolC7t43666H Brassica oleracea HOM05D008086 ORTHO05D004972 3.6e-90 335.5 250 66.8
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 1.2e-88 330.5 252 66.3
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 1.5e-88 330.1 205 77.6
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 3.2e-86 322.4 276 60.5
AL8G10360 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 1.2e-85 320.5 257 64.6
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 1.6e-85 320.1 270 59.3
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 8.7e-84 314.3 267 58.8
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 8.7e-84 314.3 267 58.8
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 1.1e-83 313.9 267 58.8
AL8G10380 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 1.5e-83 313.5 249 65.5
BcaC06g31356 Brassica carinata HOM05D008086 ORTHO05D004972 1.5e-83 313.5 281 58.0
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 3.6e-82 308.9 265 57.4
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 3.6e-82 308.9 265 57.4
Carub.0008s0020 Capsella rubella HOM05D008086 ORTHO05D004972 1.8e-81 306.6 258 62.4
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 4.0e-81 305.4 262 60.7
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 3.4e-80 302.4 264 59.5
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 1.3e-79 300.4 265 56.6
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 2.2e-79 299.7 263 56.7
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 1.9e-78 296.6 262 56.1
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 9.3e-78 294.3 255 57.6
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 1.2e-77 293.9 277 53.8
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 1.6e-77 293.5 268 55.6
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 1.6e-77 293.5 231 62.8
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 2.1e-77 293.1 277 54.2
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 4.3e-75 285.4 242 60.7
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 7.4e-75 284.6 250 56.0
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 1.3e-74 283.9 270 55.9
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 2.4e-73 279.6 228 60.5
A06p45430 Brassica napus HOM05D008086 ORTHO05D004972 2.0e-72 276.6 241 58.1
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 2.6e-72 276.2 241 58.9
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 7.6e-72 274.6 247 59.5
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 1.9e-70 270.0 233 57.5
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 2.1e-69 266.5 246 54.9
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 1.8e-68 263.5 211 61.1
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 1.9e-67 260.0 257 53.7
BraA02t08035Z Brassica rapa HOM05D008086 ORTHO05D004972 5.6e-67 258.5 275 50.9
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 1.2e-64 250.8 235 54.9
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 1.5e-64 250.4 257 52.5
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.5e-64 250.4 243 55.6
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 7.9e-61 238.0 223 57.4
C02p47660 Brassica napus HOM05D008086 ORTHO05D004972 1.5e-59 233.8 230 54.3
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 1.5e-59 233.8 204 58.3
BcaNung07056 Brassica carinata HOM05D008086 ORTHO05D004972 2.4e-57 226.5 217 53.9
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 3.1e-57 226.1 224 52.7
BcaB07g30809 Brassica carinata HOM05D008086 ORTHO05D004972 5.9e-56 221.9 229 52.4
C02p48110 Brassica napus HOM05D008086 ORTHO05D004972 3.3e-51 206.1 188 56.9
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 5.7e-51 205.3 139 71.2
BcaC03g16910 Brassica carinata HOM05D008086 ORTHO05D004972 2.2e-47 193.4 259 44.0
A02p30540 Brassica napus HOM05D008086 ORTHO05D004972 8.2e-42 174.9 144 62.5
A02p30190 Brassica napus HOM05D008086 ORTHO05D004972 3.1e-41 172.9 143 60.1
BraA02t08072Z Brassica rapa HOM05D008086 ORTHO05D004972 9.1e-41 171.4 144 61.1
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.3e-36 156.8 264 36.0
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 6.7e-36 155.2 254 37.0
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 1.5e-35 154.1 264 35.2
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.3e-34 151.0 264 35.6
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 7.0e-33 145.2 265 34.7
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 1.2e-32 144.4 264 33.7
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 4.5e-32 142.5 267 35.6
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 1.0e-31 141.4 254 32.3
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 1.0e-31 141.4 120 60.0
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 1.3e-31 141.0 255 34.1
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 1.7e-31 140.6 260 34.2
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 5.0e-31 139.0 256 34.4
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 8.5e-31 138.3 263 32.3
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 8.5e-31 138.3 267 34.1
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 8.5e-31 138.3 267 34.1
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.9e-30 137.1 264 34.5
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.9e-30 137.1 247 34.8
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 4.7e-29 132.5 229 36.7
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 4.7e-29 132.5 229 36.7
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 1.0e-28 131.3 240 36.2
C07p32950 Brassica napus HOM05D008086 ORTHO05D004972 1.4e-28 131.0 110 60.0
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 3.0e-28 129.8 251 34.3
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 8.8e-28 128.3 269 32.0
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 2.2e-26 123.6 235 33.2
C03p62430 Brassica napus HOM05D008086 ORTHO05D004972 2.8e-26 123.2 160 46.2
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 1.4e-25 120.9 233 35.2
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 1.4e-25 120.9 277 31.8
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 1.8e-25 120.6 237 31.6
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 2.4e-25 120.2 265 31.3
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 5.3e-25 119.0 282 29.8
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.2e-24 117.9 222 33.8
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 1.6e-24 117.5 233 35.6
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 2.0e-24 117.1 246 33.7
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 2.7e-24 116.7 232 35.3
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 2.7e-24 116.7 280 30.4
Carub.0007s2487 Capsella rubella HOM05D007337 ORTHO05D004972 1.0e-23 114.8 287 29.3
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.0e-23 114.8 248 30.6
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 1.3e-23 114.4 292 27.7
QL12p012461 Quercus lobata HOM05D008086 ORTHO05D004972 1.7e-23 114.0 212 33.5
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 2.2e-23 113.6 279 28.7
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 2.2e-23 113.6 258 30.6
QL12p012450 Quercus lobata HOM05D007337 ORTHO05D004972 2.2e-23 113.6 200 36.0
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 3.8e-23 112.8 258 30.6
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 1.1e-22 111.3 275 29.8
BolC2t10844H Brassica oleracea HOM05D008086 ORTHO05D041227 3.2e-22 109.8 148 45.9
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 1.6e-21 107.5 212 33.0
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 2.7e-21 106.7 205 36.6
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 3.6e-21 106.3 261 31.4
CARHR223020 Cardamine hirsuta HOM05D007337 ORTHO05D004972 3.6e-21 106.3 285 30.9
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 6.1e-21 105.5 128 39.1
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.8e-20 104.0 240 28.8
BolC3t18501H Brassica oleracea HOM05D008086 ORTHO05D004972 3.0e-20 103.2 149 43.0
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 4.0e-20 102.8 134 36.6
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 4.0e-20 102.8 244 28.7
A03p49970 Brassica napus HOM05D007337 ORTHO05D004972 6.8e-20 102.1 254 32.7
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 8.8e-20 101.7 282 28.4
BraA03t14089Z Brassica rapa HOM05D007337 ORTHO05D004972 8.8e-20 101.7 251 33.5
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 2.0e-19 100.5 286 27.6
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 2.0e-19 100.5 239 30.5
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 3.4e-19 99.8 121 38.0
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 3.4e-19 99.8 245 30.6
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 3.4e-19 99.8 254 33.9
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 4.4e-19 99.4 274 28.8
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 5.7e-19 99.0 209 31.1
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 7.5e-19 98.6 235 31.1
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 7.5e-19 98.6 235 31.1
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 9.8e-19 98.2 288 26.0
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 1.7e-18 97.4 230 31.3
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 4.8e-18 95.9 236 29.2
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 4.8e-18 95.9 236 28.8
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 6.3e-18 95.5 114 41.2
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 6.3e-18 95.5 246 29.7
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 8.3e-18 95.1 230 31.7
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 1.4e-17 94.4 236 28.8
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 1.4e-17 94.4 184 32.6
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 1.8e-17 94.0 184 32.6
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 3.1e-17 93.2 242 30.2
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 7.0e-17 92.0 243 29.6
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 7.0e-17 92.0 243 29.6
AL7G38310 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 9.1e-17 91.7 253 30.8
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 2.0e-16 90.5 238 28.6
AL7G38340 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 2.7e-16 90.1 234 29.1
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 2.7e-16 90.1 236 28.4
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 2.7e-16 90.1 243 32.1
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 4.5e-16 89.4 118 36.4
Thhalv10026955m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.0e-15 88.2 128 34.4
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 1.3e-15 87.8 209 30.6
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 4.2e-14 82.8 228 28.9
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 5.5e-14 82.4 228 28.1
BcaC06g33489 Brassica carinata HOM05D007337 ORTHO05D004972 1.6e-13 80.9 252 28.2
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 8.0e-13 78.6 228 30.7
CARHR223010 Cardamine hirsuta HOM05D007337 ORTHO05D004972 8.0e-13 78.6 82 45.1
AT4G16555 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.4e-12 77.8 147 33.3
CAN.G1218.23 Capsicum annuum HOM05D008086 ORTHO05D010560 2.6e-11 73.6 111 35.1
Sopen08g027190 Solanum pennellii HOM05D001099 ORTHO05D010560 2.6e-11 73.6 100 37.0
C02p48120 Brassica napus HOM05D008086 ORTHO05D041227 3.4e-11 73.2 83 48.2
PGSC0003DMG400004806 Solanum tuberosum HOM05D008086 ORTHO05D010560 3.4e-11 73.2 111 35.1
Peaxi162Scf00002g01721 Petunia axillaris HOM05D008086 ORTHO05D010560 9.8e-11 71.6 100 37.0
Solyc08g078720.3 Solanum lycopersicum HOM05D008086 ORTHO05D010560 1.3e-10 71.2 100 36.0
BolC4t21835H Brassica oleracea HOM05D007337 ORTHO05D004972 8.3e-10 68.6 252 26.2
BolC4t21837H Brassica oleracea HOM05D007337 ORTHO05D004972 8.3e-10 68.6 252 26.2
BolC4t21838H Brassica oleracea HOM05D007337 ORTHO05D004972 8.3e-10 68.6 252 26.2
Nitab4.5_0008481g0040 Nicotiana tabacum HOM05D008086 ORTHO05D010560 1.1e-09 68.2 96 37.5
Nitab4.5_0000312g0140 Nicotiana tabacum HOM05D001099 ORTHO05D010560 1.4e-09 67.8 96 36.5
Peaxi162Scf00002g00191 Petunia axillaris HOM05D001099 ORTHO05D000958 4.1e-09 66.2 194 26.3
C07p47990 Brassica napus HOM05D007337 ORTHO05D004972 5.4e-09 65.9 238 28.6
Cc08_g12570 Coffea canephora HOM05D001099 ORTHO05D010560 1.2e-08 64.7 103 36.9
A06p44940 Brassica napus HOM05D009070 ORTHO05D010560 4.5e-08 62.8 112 33.0
BraA06t27365Z Brassica rapa HOM05D009070 ORTHO05D010560 4.5e-08 62.8 112 33.0
Nitab4.5_0007598g0030 Nicotiana tabacum HOM05D001099 ORTHO05D000958 5.9e-08 62.4 235 23.8
C07p31240 Brassica napus HOM05D009070 ORTHO05D010560 7.8e-08 62.0 112 33.0
BolC7t43665H Brassica oleracea HOM05D009070 ORTHO05D010560 7.8e-08 62.0 112 33.0
Dinv39135 Davidia involucrata HOM05D009070 ORTHO05D010560 1.0e-07 61.6 111 31.5
Rhsim09G0039000 Rhododendron simsii HOM05D007337 ORTHO05D000958 1.7e-07 60.8 104 37.5
BolC7t45323H Brassica oleracea HOM05D007337 ORTHO05D004972 8.6e-07 58.5 88 39.8
BcaC09g50367 Brassica carinata HOM05D007337 ORTHO05D004972 1.5e-06 57.8 165 30.9
Actinidia02125 Actinidia chinensis HOM05D001099 ORTHO05D000958 3.3e-06 56.6 101 32.7
Hma1.2p1_1786F.1_g302310 Hydrangea macrophylla HOM05D001099 ORTHO05D010560 7.3e-06 55.5 107 29.9


User provided reference genes

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