Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 9.0e-106 387.5 290 100.0
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 3.2e-103 379.0 290 97.6
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 9.3e-103 377.5 290 97.9
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 4.1e-90 335.5 290 91.4
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 4.5e-89 332.0 291 91.4
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 6.5e-88 328.2 300 85.0
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 1.6e-81 307.0 300 84.3
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 2.0e-76 290.0 298 83.6
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 1.5e-71 273.9 306 76.5
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 1.6e-70 270.4 304 78.0
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 9.1e-66 254.6 295 78.3
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 4.7e-62 242.3 322 68.0
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 3.1e-58 229.6 307 72.6
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 5.4e-50 202.2 294 68.0
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 4.6e-41 172.6 297 64.3
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 3.9e-40 169.5 264 71.2
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 6.6e-40 168.7 264 70.8
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 2.8e-38 163.3 308 62.0
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 1.1e-37 161.4 295 64.1
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 7.5e-36 155.2 302 60.9
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 1.7e-35 154.1 328 58.8
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 2.4e-34 150.2 276 61.2
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 3.2e-34 149.8 297 62.3
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 1.2e-33 147.9 274 61.7
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 1.2e-33 147.9 281 64.8
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 1.6e-33 147.5 265 64.9
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 2.7e-33 146.7 297 62.0
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 2.7e-33 146.7 280 65.0
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 1.0e-32 144.8 294 51.4
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 1.0e-32 144.8 298 59.1
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 1.7e-32 144.1 301 60.8
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 1.7e-32 144.1 250 64.8
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 2.3e-32 143.7 252 67.9
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 3.9e-32 142.9 302 59.3
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 5.1e-32 142.5 306 59.5
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 6.6e-32 142.1 251 64.5
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 8.6e-32 141.7 249 69.1
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 8.6e-32 141.7 305 59.3
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 1.1e-31 141.4 294 61.6
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 1.1e-31 141.4 258 65.5
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 1.5e-31 141.0 302 59.3
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 1.9e-31 140.6 297 47.8
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 9.5e-31 138.3 300 59.7
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 1.6e-30 137.5 274 66.1
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 2.8e-30 136.7 245 68.2
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 3.6e-30 136.3 164 51.2
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 4.7e-30 136.0 298 61.4
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 1.1e-29 134.8 268 64.2
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 3.1e-29 133.3 329 54.4
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 3.1e-29 133.3 231 63.2
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 4.0e-29 132.9 313 55.0
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 4.0e-29 132.9 279 62.0
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 5.2e-29 132.5 302 59.3
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 5.2e-29 132.5 251 66.1
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 5.2e-29 132.5 302 58.9
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 8.9e-29 131.7 306 56.9
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 8.9e-29 131.7 285 59.3
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 1.2e-28 131.3 263 63.9
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.2e-28 131.3 303 56.1
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 5.8e-28 129.0 304 56.2
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 5.8e-28 129.0 236 69.5
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 7.6e-28 128.6 359 51.0
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 7.6e-28 128.6 233 68.7
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 9.9e-28 128.3 288 54.5
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.7e-27 127.5 244 69.3
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 2.2e-27 127.1 238 69.7
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 3.8e-27 126.3 233 68.2
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 3.8e-27 126.3 260 62.7
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 4.9e-27 125.9 358 50.3
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 6.4e-27 125.6 304 57.9
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 1.1e-26 124.8 207 73.9
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 1.4e-26 124.4 228 51.8
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 1.9e-26 124.0 143 51.0
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 3.2e-26 123.2 261 60.9
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 4.1e-26 122.9 250 66.0
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 7.1e-26 122.1 189 74.6
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 9.2e-26 121.7 211 52.6
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 1.2e-25 121.3 265 58.9
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 1.2e-25 121.3 274 55.8
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 2.1e-25 120.6 253 65.2
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 2.7e-25 120.2 264 64.4
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 3.5e-25 119.8 215 71.2
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 4.6e-25 119.4 226 70.8
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 1.3e-24 117.9 302 56.0
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 1.7e-24 117.5 299 53.8
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 2.3e-24 117.1 197 73.6
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 3.0e-24 116.7 197 73.6
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 1.5e-23 114.4 209 72.7
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.9e-23 114.0 146 47.3
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 2.5e-23 113.6 233 66.5
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 2.5e-23 113.6 308 54.9
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 4.3e-23 112.8 265 61.5
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 4.3e-23 112.8 264 59.1
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 5.6e-23 112.5 223 70.0
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 7.3e-23 112.1 291 57.4
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 1.1e-21 108.2 144 47.2
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 1.1e-21 108.2 160 45.0
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.4e-21 107.8 275 58.9
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 1.4e-21 107.8 262 59.9
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 3.1e-21 106.7 256 46.1
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 5.2e-21 105.9 118 53.4
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 1.2e-20 104.8 161 44.1
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 2.0e-20 104.0 187 75.4
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 2.6e-20 103.6 214 69.2
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 3.8e-19 99.8 66 74.2
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 5.4e-18 95.9 129 47.3
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 9.3e-18 95.1 99 53.5
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 2.7e-17 93.6 94 54.3
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 3.5e-17 93.2 248 61.3
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 1.7e-16 90.9 93 58.1
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 2.3e-16 90.5 199 69.8
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 2.5e-15 87.0 287 27.9
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 7.3e-15 85.5 204 67.2
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 6.9e-13 79.0 46 82.6
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 8.4e-11 72.0 58 56.9
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 1.1e-10 71.6 58 56.9
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 1.1e-10 71.6 36 91.7
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 1.2e-09 68.2 83 48.2
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 1.0e-08 65.1 59 54.2
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-08 64.7 58 51.7
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 1.8e-08 64.3 83 45.8
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 2.3e-08 63.9 58 53.4
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 3.9e-08 63.2 64 48.4
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 5.1e-08 62.8 59 52.5
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 6.7e-08 62.4 35 82.9
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 8.7e-08 62.0 59 54.2
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 8.7e-08 62.0 59 54.2
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-07 61.6 58 50.0
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 1.9e-07 60.8 58 48.3
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 1.9e-07 60.8 59 47.5
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 2.5e-07 60.5 58 48.3
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 3.3e-07 60.1 58 48.3
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 3.3e-07 60.1 58 48.3
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.3e-07 60.1 58 48.3
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 4.3e-07 59.7 58 46.6
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 4.3e-07 59.7 88 38.6
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 1.3e-06 58.2 89 38.2
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 1.3e-06 58.2 85 36.5
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 1.3e-06 58.2 59 47.5
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 2.1e-06 57.4 48 54.2
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 2.1e-06 57.4 58 46.6
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 2.8e-06 57.0 42 66.7
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 2.8e-06 57.0 112 33.9
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 4.8e-06 56.2 153 30.1
vmacro13799 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 8.1e-06 55.5 58 43.1


User provided reference genes

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