Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34331 Brassica carinata HOM05D002969 ORTHO05D003308 1.6e-73 279.3 137 100.0
C07p30270 Brassica napus HOM05D002969 ORTHO05D003308 1.6e-73 279.3 137 100.0
BolC7t43569H Brassica oleracea HOM05D002969 ORTHO05D003308 1.6e-73 279.3 137 100.0
A07p07070 Brassica napus HOM05D002969 ORTHO05D003308 1.4e-69 266.2 137 97.1
Sp3g22890 Schrenkiella parvula HOM05D002969 ORTHO05D003308 4.8e-65 251.1 137 86.9
BcaB06g26734 Brassica carinata HOM05D002969 ORTHO05D003308 6.9e-64 247.3 137 89.8
AT1G17450 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 2.2e-62 242.3 137 85.4
CARHR018040 Cardamine hirsuta HOM05D002969 ORTHO05D003308 2.5e-61 238.8 137 83.9
AL1G29730 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 3.2e-61 238.4 137 84.7
Thhalv10017997m.g Eutrema salsugineum HOM05D002969 ORTHO05D003308 1.6e-57 226.1 137 81.0
AT1G58766 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 6.2e-57 224.2 136 81.6
AT1G59077 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 6.2e-57 224.2 136 81.6
AT1G59453 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 6.2e-57 224.2 136 81.6
Carub.0001s1721 Capsella rubella HOM05D002969 ORTHO05D003308 6.2e-57 224.2 137 80.3
AL2G17610 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 8.2e-57 223.8 138 79.7
Carub.0002s0593 Capsella rubella HOM05D002969 ORTHO05D003308 9.3e-53 210.3 139 77.0
Aa31LG7G2260 Aethionema arabicum HOM05D002969 ORTHO05D003308 7.4e-50 200.7 139 71.9
BcaC06g35804 Brassica carinata HOM05D002969 ORTHO05D003308 3.0e-43 178.7 86 100.0
THA.LOC104813957 Tarenaya hassleriana HOM05D002969 ORTHO05D003308 8.8e-43 177.2 135 65.9
BolC7t41532H Brassica oleracea HOM05D002969 ORTHO05D003308 4.2e-37 158.3 75 100.0
BraA07t28494Z Brassica rapa HOM05D002969 ORTHO05D003308 4.2e-37 158.3 75 100.0
Gohir.A05G405950 Gossypium hirsutum HOM05D002969 ORTHO05D003308 3.1e-32 142.1 112 58.9
Dinv30673 Davidia involucrata HOM05D002969 ORTHO05D003308 4.1e-32 141.7 126 57.9
Dinv34333 Davidia involucrata HOM05D002969 ORTHO05D003308 4.1e-32 141.7 126 57.9
Thecc.06G119100 Theobroma cacao HOM05D002969 ORTHO05D003308 4.1e-32 141.7 123 56.1
COL.COLO4_30764 Corchorus olitorius HOM05D002969 ORTHO05D003308 9.1e-32 140.6 129 55.0
Gohir.D04G009700 Gossypium hirsutum HOM05D002969 ORTHO05D003308 9.1e-32 140.6 112 58.9
RcHm_v2.0_Chr2g0145161 Rosa chinensis HOM05D002969 ORTHO05D003308 2.6e-31 139.0 115 58.3
GSVIVG01016771001 Vitis vinifera HOM05D002969 ORTHO05D003308 2.6e-31 139.0 126 54.0
FvH4_6g34630 Fragaria vesca HOM05D002969 ORTHO05D003308 3.5e-31 138.7 115 57.4
FAN09G2022 Fragaria x ananassa HOM05D002969 ORTHO05D003308 3.5e-31 138.7 115 57.4
FAN14G5519 Fragaria x ananassa HOM05D002969 ORTHO05D003308 3.5e-31 138.7 115 57.4
TWI31G0668 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 4.5e-31 138.3 125 54.4
FAN05G1938 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.0e-30 137.1 117 57.3
Gorai.012G011500 Gossypium raimondii HOM05D002969 ORTHO05D003308 1.0e-30 137.1 112 57.1
Prupe.3G042500 Prunus persica HOM05D002969 ORTHO05D003308 1.0e-30 137.1 116 56.9
HanXRQChr10g0301861 Helianthus annuus HOM05D002969 ORTHO05D003308 1.7e-30 136.3 112 60.7
Lsat_1_v5_gn_5_75740 Lactuca sativa HOM05D002969 ORTHO05D003308 2.9e-30 135.6 129 54.3
PGR102G0955 Punica granatum HOM05D002969 ORTHO05D003308 8.5e-30 134.0 123 54.5
Manes.11G021000 Manihot esculenta HOM05D002969 ORTHO05D003308 1.9e-29 132.9 115 56.5
Ca_13957_v3 Cicer arietinum L. HOM05D002969 ORTHO05D003308 3.2e-29 132.1 105 60.0
TAR626G1632 Trochodendron aralioides HOM05D002969 ORTHO05D003308 5.5e-29 131.3 103 61.2
Atru.chr1.3951 Acer truncatum HOM05D002969 ORTHO05D003308 7.2e-29 131.0 129 49.6
Potri.003G064000 Populus trichocarpa HOM05D002969 ORTHO05D003308 7.2e-29 131.0 105 60.0
Prupe.8G262800 Prunus persica HOM05D002969 ORTHO05D003308 7.2e-29 131.0 116 55.2
Aqoxy7G01394 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 1.2e-28 130.2 103 63.1
Actinidia32183 Actinidia chinensis HOM05D002969 ORTHO05D003308 3.6e-28 128.6 103 58.3
Cc02_g14940 Coffea canephora HOM05D002969 ORTHO05D003308 3.6e-28 128.6 117 54.7
COL.COLO4_27975 Corchorus olitorius HOM05D002969 ORTHO05D003308 3.6e-28 128.6 112 56.2
Sabra03G0037600 Salix brachista HOM05D002969 ORTHO05D003308 3.6e-28 128.6 105 60.0
MD09G1184300 Malus domestica HOM05D002969 ORTHO05D003308 4.7e-28 128.3 115 53.9
Glyma.19G263900 Glycine max HOM05D002969 ORTHO05D003308 8.0e-28 127.5 115 55.7
CSS0043728 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 1.0e-27 127.1 103 59.2
CANSAT54G2721 Cannabis sativa HOM05D002969 ORTHO05D003308 1.4e-27 126.7 126 53.2
ClCG05G007230 Citrullus lanatus HOM05D002969 ORTHO05D003308 1.8e-27 126.3 106 54.7
Glyma.02G000100 Glycine max HOM05D002969 ORTHO05D003308 2.3e-27 125.9 115 55.7
Rhsim08G0238100 Rhododendron simsii HOM05D002969 ORTHO05D003308 2.3e-27 125.9 107 60.7
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 3.0e-27 125.6 109 55.0
MBI06_g12843_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 3.0e-27 125.6 104 58.7
CsaV3_3G015990 Cucumis sativus L. HOM05D002969 ORTHO05D003308 3.9e-27 125.2 104 54.8
Eucgr.J02821 Eucalyptus grandis HOM05D002969 ORTHO05D003308 5.2e-27 124.8 104 58.7
MSTRG.10956 Avicennia marina HOM05D002969 ORTHO05D003308 8.8e-27 124.0 103 56.3
Nn7g36584 Nelumbo nucifera HOM05D002969 ORTHO05D003308 8.8e-27 124.0 103 57.3
Psat1g003120 Pisum sativum HOM05D002969 ORTHO05D003308 8.8e-27 124.0 130 51.5
Haze_16025 Corylus avellana HOM05D002969 ORTHO05D003308 1.1e-26 123.6 104 56.7
Lj7C292T8 Lonicera japonica HOM05D002969 ORTHO05D003308 1.5e-26 123.2 103 58.3
Ciclev10024687m.g Citrus clementina HOM05D002969 ORTHO05D003308 2.0e-26 122.9 116 48.3
DCAR_016128 Daucus carota HOM05D002969 ORTHO05D003308 2.0e-26 122.9 110 54.5
PSO017G1981 Papaver somniferum HOM05D002969 ORTHO05D003308 2.0e-26 122.9 103 56.3
Sed0027017 Sechium edule HOM05D002969 ORTHO05D003308 2.0e-26 122.9 131 46.6
Lalb_Chr10g0094641 Lupinus albus HOM05D002969 ORTHO05D003308 2.6e-26 122.5 115 52.2
SGA_v2.0_scaffold71G23857 Striga asiatica HOM05D002969 ORTHO05D003308 2.6e-26 122.5 127 48.8
TPR.G14707 Trifolium pratense HOM05D002969 ORTHO05D003308 3.3e-26 122.1 103 57.3
Oeu007563.1 Olea europaea HOM05D002969 ORTHO05D003308 4.4e-26 121.7 103 54.4
Glyma.16G219900 Glycine max HOM05D002969 ORTHO05D003308 7.4e-26 120.9 115 53.0
Medtr3g005240 Medicago truncatula HOM05D002969 ORTHO05D003308 7.4e-26 120.9 104 53.8
MD11G1308600 Malus domestica HOM05D002969 ORTHO05D003308 9.7e-26 120.6 109 52.3
Phvul.007G234600 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 9.7e-26 120.6 115 50.4
PSO210G1276 Papaver somniferum HOM05D002969 ORTHO05D003308 1.3e-25 120.2 114 54.4
PSO447G0254 Papaver somniferum HOM05D002969 ORTHO05D003308 1.3e-25 120.2 114 54.4
Peaxi162Scf00559g00315 Petunia axillaris HOM05D002969 ORTHO05D003308 1.7e-25 119.8 119 51.3
Lsat_1_v5_gn_1_38040 Lactuca sativa HOM05D002969 ORTHO05D003308 2.8e-25 119.0 95 60.0
CAN.G397.51 Capsicum annuum HOM05D002969 ORTHO05D003308 3.7e-25 118.6 111 55.0
Cfa003558 Carpinus fangiana HOM05D002969 ORTHO05D003308 3.7e-25 118.6 109 53.2
Phvul.011G011400 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 3.7e-25 118.6 115 50.4
Lj3g0017600 Lotus japonicus HOM05D002969 ORTHO05D003308 4.8e-25 118.2 105 54.3
QL05p007828 Quercus lobata HOM05D002969 ORTHO05D003308 6.3e-25 117.9 105 53.3
PGSC0003DMG401008881 Solanum tuberosum HOM05D002969 ORTHO05D003308 6.3e-25 117.9 111 53.2
Haze_15990 Corylus avellana HOM05D002969 ORTHO05D003308 8.2e-25 117.5 109 53.2
Solyc09g009800.3 Solanum lycopersicum HOM05D002969 ORTHO05D003308 8.2e-25 117.5 111 53.2
Sopen09g004560 Solanum pennellii HOM05D002969 ORTHO05D003308 8.2e-25 117.5 111 53.2
TPR.G25535 Trifolium pratense HOM05D002969 ORTHO05D003308 8.2e-25 117.5 124 50.0
DCAR_022697 Daucus carota HOM05D002969 ORTHO05D003308 1.1e-24 117.1 110 51.8
RcHm_v2.0_Chr6g0291551 Rosa chinensis HOM05D002969 ORTHO05D003308 1.1e-24 117.1 123 46.3
arahy.Tifrunner.gnm1.ann1.8DY1VB Arachis hypogaea HOM05D002969 ORTHO05D003308 1.8e-24 116.3 115 49.6
Duzib235G1299 Durio zibethinus HOM05D002969 ORTHO05D003308 1.8e-24 116.3 112 51.8
AUR62010285 Chenopodium quinoa HOM05D002969 ORTHO05D003308 4.1e-24 115.2 103 54.4
FAN15G1247 Fragaria x ananassa HOM05D002969 ORTHO05D003308 9.1e-24 114.0 123 48.0
arahy.Tifrunner.gnm1.ann1.MA4BJF Arachis hypogaea HOM05D002969 ORTHO05D003308 1.6e-23 113.2 115 48.7
Peaxi162Scf00068g02519 Petunia axillaris HOM05D002969 ORTHO05D003308 1.6e-23 113.2 107 53.3
SalBow6G7155 Salvia bowleyana HOM05D002969 ORTHO05D003308 1.6e-23 113.2 103 52.4
SEGI_00835 Sequoiadendron giganteum HOM05D002969 ORTHO05D011582 1.6e-23 113.2 104 51.9
ECA247G3059 Erigeron canadensis HOM05D002969 ORTHO05D003308 2.0e-23 112.8 85 61.2
ECA240G4395 Erigeron canadensis HOM05D002969 ORTHO05D003308 7.7e-23 110.9 94 57.4
FAN24G1542 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.0e-22 110.5 123 48.0
Migut.I01069 Erythranthe guttata HOM05D002969 ORTHO05D003308 1.3e-22 110.2 111 51.4
FvH4_2g23920 Fragaria vesca HOM05D002969 ORTHO05D003308 1.3e-22 110.2 123 48.0
FAN27G1917 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.3e-22 110.2 123 45.5
CDE02G2049 Ceratophyllum demersum HOM05D002969 ORTHO05D003308 5.0e-22 108.2 86 57.0
Atru.chr4.3098 Acer truncatum HOM05D002969 ORTHO05D003308 1.1e-21 107.1 96 55.2
Aqoxy4G01957 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 4.2e-21 105.1 103 47.6
Nitab4.5_0000794g0160 Nicotiana tabacum HOM05D002969 ORTHO05D003308 4.7e-20 101.7 91 57.1
Os02g0633100 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 4.0e-19 98.6 111 44.1
EL10Ac9g22289 Beta vulgaris HOM05D002969 ORTHO05D003308 7.5e-18 94.4 103 45.6
HPP92_011314 Vanilla planifolia HOM05D002969 ORTHO05D003308 9.7e-18 94.0 73 56.2
Zm00001eb254630 Zea mays HOM05D002969 ORTHO05D003308 2.2e-17 92.8 117 44.4
SMO119G0293 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 2.8e-17 92.4 127 38.6
C07p10660 Brassica napus HOM05D002969 ORTHO05D003308 1.1e-16 90.5 43 95.3
Cpa.g.sc34.70 Carica papaya HOM05D002969 ORTHO05D003308 1.8e-16 89.7 62 64.5
AUR62039104 Chenopodium quinoa HOM05D002969 ORTHO05D003308 3.1e-16 89.0 103 45.6
Pp3c4_16500 Physcomitrium patens HOM05D002969 ORTHO05D003308 1.2e-15 87.0 86 40.7
TWI31G0627 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 2.7e-15 85.9 106 45.3
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 5.0e-14 81.6 54 66.7
Mapoly0002s0195 Marchantia polymorpha HOM05D002969 ORTHO05D003308 3.2e-13 79.0 118 39.0
Medtr8g062660 Medicago truncatula HOM05D000007 ORTHO05D003308 9.4e-13 77.4 86 46.5
Gorai.010G233800 Gossypium raimondii HOM05D002969 ORTHO05D003308 6.1e-12 74.7 96 43.8
Peaxi162Scf00006g00026 Petunia axillaris HOM05D002969 ORTHO05D003308 1.4e-11 73.6 49 67.3
Gohir.D06G200300 Gossypium hirsutum HOM05D002969 ORTHO05D003308 1.8e-11 73.2 96 42.7
Ah.01g018170 Amaranthus hybridus HOM05D002969 ORTHO05D003308 4.0e-11 72.0 77 51.9
SMO196G0130 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 6.8e-11 71.2 115 35.7
Ah.01g009920 Amaranthus hybridus HOM05D002969 ORTHO05D003308 4.4e-10 68.6 73 45.2
PSO700G0258 Papaver somniferum HOM05D002969 ORTHO05D003308 7.5e-10 67.8 59 52.5
Duzib192G0334 Durio zibethinus HOM05D002969 ORTHO05D003308 1.7e-09 66.6 97 39.2
Migut.E00647 Erythranthe guttata HOM05D002969 ORTHO05D003308 1.7e-09 66.6 106 38.7
CDE04G0067 Ceratophyllum demersum HOM05D007059 ORTHO05D009155 2.2e-09 66.2 76 44.7
ATR0618G078 Amborella trichopoda HOM05D002969 ORTHO05D003308 2.8e-09 65.9 49 55.1
MBI06_g44919_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 5.4e-08 61.6 58 51.7
Nitab4.5_0010825g0010 Nicotiana tabacum HOM05D002969 ORTHO05D003308 9.1e-08 60.8 49 53.1
Sc18g0005650 Simmondsia chinensis HOM05D002969 ORTHO05D003308 1.6e-07 60.1 36 66.7
Cre12.g518107 Chlamydomonas reinhardtii HOM05D002969 ORTHO05D003308 2.7e-07 59.3 64 42.2
Thecc.06G115400 Theobroma cacao HOM05D002969 ORTHO05D003308 1.0e-06 57.4 67 46.3
unitig_26.g8927 Utricularia gibba HOM05D002969 ORTHO05D003308 2.3e-06 56.2 49 59.2


User provided reference genes

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