Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p30250 Brassica napus HOM05D046907 ORTHO05D042309 2.0e-40 168.7 86 100.0
BolC7t43566H Brassica oleracea HOM05D046907 ORTHO05D042309 3.2e-19 98.2 58 89.7
BcaNung06439 Brassica carinata HOM05D000788 ORTHO05D005073 2.9e-12 75.1 74 52.7
A05p32980 Brassica napus HOM05D000788 ORTHO05D005073 2.9e-12 75.1 74 52.7
C05p49760 Brassica napus HOM05D000788 ORTHO05D005073 2.9e-12 75.1 74 52.7
BolC5t33728H Brassica oleracea HOM05D000788 ORTHO05D005073 2.9e-12 75.1 74 52.7
BraA05t22124Z Brassica rapa HOM05D000788 ORTHO05D005073 2.9e-12 75.1 74 52.7
CARHR091760 Cardamine hirsuta HOM05D000788 ORTHO05D005073 2.9e-12 75.1 74 52.7
Thhalv10020557m.g Eutrema salsugineum HOM05D000788 ORTHO05D005073 5.0e-12 74.3 74 52.7
BcaB06g25756 Brassica carinata HOM05D000788 ORTHO05D005073 6.6e-12 73.9 74 51.4
AL3G29420 Arabidopsis lyrata HOM05D000788 ORTHO05D005073 1.5e-11 72.8 74 52.7
Carub.0003s1628 Capsella rubella HOM05D000788 ORTHO05D005073 7.2e-11 70.5 74 51.4
AT3G16560 Arabidopsis thaliana HOM05D000788 ORTHO05D005073 1.2e-10 69.7 74 50.0
ATR0796G163 Amborella trichopoda HOM05D000788 ORTHO05D005073 1.6e-10 69.3 74 50.0
Sp3g14880 Schrenkiella parvula HOM05D000788 ORTHO05D005073 3.6e-10 68.2 74 50.0
Aa31LG8G3690 Aethionema arabicum HOM05D000788 ORTHO05D005073 1.4e-09 66.2 74 45.9
Thecc.04G284100 Theobroma cacao HOM05D000788 ORTHO05D005073 4.0e-09 64.7 74 44.6
Duzib151G0526 Durio zibethinus HOM05D000788 ORTHO05D005073 5.2e-09 64.3 74 44.6
ATR0582G360 Amborella trichopoda HOM05D000788 ORTHO05D005073 8.9e-09 63.5 74 44.6
THA.LOC104820260 Tarenaya hassleriana HOM05D000788 ORTHO05D005073 8.9e-09 63.5 74 44.6
Duzib052G0646 Durio zibethinus HOM05D000788 ORTHO05D005073 1.2e-08 63.2 74 44.6
Nn4g22051 Nelumbo nucifera HOM05D000788 ORTHO05D005073 1.5e-08 62.8 74 43.2
Cpa.g.sc16.166 Carica papaya HOM05D000788 ORTHO05D005073 2.6e-08 62.0 74 41.9
Ciclev10005061m.g Citrus clementina HOM05D000788 ORTHO05D005073 3.4e-08 61.6 74 43.2
COL.COLO4_13880 Corchorus olitorius HOM05D000788 ORTHO05D005073 3.4e-08 61.6 74 43.2
CDE05G0941 Ceratophyllum demersum HOM05D000788 ORTHO05D005073 4.4e-08 61.2 74 45.9
CDE05G1092 Ceratophyllum demersum HOM05D000788 ORTHO05D005073 4.4e-08 61.2 74 44.6
Os04g0403701 Oryza sativa ssp. japonica HOM05D000788 ORTHO05D005073 4.4e-08 61.2 74 43.2
Sc19g0005190 Simmondsia chinensis HOM05D000788 ORTHO05D005073 4.4e-08 61.2 74 43.2
Sc19g0005300 Simmondsia chinensis HOM05D000788 ORTHO05D005073 4.4e-08 61.2 74 43.2
Gohir.A09G239400 Gossypium hirsutum HOM05D000788 ORTHO05D005073 5.7e-08 60.8 74 41.9
Gohir.D09G240300 Gossypium hirsutum HOM05D000788 ORTHO05D005073 5.7e-08 60.8 74 41.9
Gorai.006G263300 Gossypium raimondii HOM05D000788 ORTHO05D005073 5.7e-08 60.8 74 41.9
THA.LOC104821774 Tarenaya hassleriana HOM05D000788 ORTHO05D005073 5.7e-08 60.8 74 43.2
GSVIVG01017754001 Vitis vinifera HOM05D000788 ORTHO05D005073 5.7e-08 60.8 74 41.9
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 7.5e-08 60.5 74 41.9
PSO017G5780 Papaver somniferum HOM05D000788 ORTHO05D005073 7.5e-08 60.5 74 41.9
Rhsim04G0221300 Rhododendron simsii HOM05D000788 ORTHO05D005073 7.5e-08 60.5 74 43.2
MSTRG.10092 Avicennia marina HOM05D000788 ORTHO05D005073 9.8e-08 60.1 74 40.5
FvH4_4g17950 Fragaria vesca HOM05D000788 ORTHO05D005073 9.8e-08 60.1 74 41.9
Potri.008G207700 Populus trichocarpa HOM05D000788 ORTHO05D005073 9.8e-08 60.1 74 41.9
Sabra08G0153700 Salix brachista HOM05D000788 ORTHO05D005073 9.8e-08 60.1 74 41.9
FAN12G1695 Fragaria x ananassa HOM05D000788 ORTHO05D005073 1.3e-07 59.7 74 40.5
FAN12G3870 Fragaria x ananassa HOM05D000788 ORTHO05D005073 1.3e-07 59.7 74 40.5
Hma1.2p1_2670F.1_g326630 Hydrangea macrophylla HOM05D000788 ORTHO05D005073 1.3e-07 59.7 74 43.2
TAR622G0421 Trochodendron aralioides HOM05D000788 ORTHO05D005073 1.3e-07 59.7 74 40.5
CDE12G0707 Ceratophyllum demersum HOM05D000788 ORTHO05D005073 1.7e-07 59.3 74 44.6
HanXRQChr13g0411331 Helianthus annuus HOM05D000788 ORTHO05D005073 1.7e-07 59.3 74 41.9
PSO478G4742 Papaver somniferum HOM05D000788 ORTHO05D005073 1.7e-07 59.3 74 41.9
QL06p008805 Quercus lobata HOM05D000788 ORTHO05D005073 1.7e-07 59.3 74 41.9
TPR.G3215 Trifolium pratense HOM05D000788 ORTHO05D005073 1.7e-07 59.3 74 43.2
TWI73G0345 Tripterygium wilfordii HOM05D000788 ORTHO05D005073 1.7e-07 59.3 74 40.5
Ah.04g153850 Amaranthus hybridus HOM05D000788 ORTHO05D005073 2.2e-07 58.9 68 44.1
ECA240G0474 Erigeron canadensis HOM05D000788 ORTHO05D005073 2.2e-07 58.9 74 41.9
Lj6g0014465 Lotus japonicus HOM05D000788 ORTHO05D005073 2.2e-07 58.9 74 43.2
TPR.G13853 Trifolium pratense HOM05D000788 ORTHO05D005073 2.2e-07 58.9 68 47.1
Zm00001eb084510 Zea mays HOM05D000788 ORTHO05D005073 2.2e-07 58.9 74 41.9
Ah.13g074910 Amaranthus hybridus HOM05D000788 ORTHO05D005073 2.8e-07 58.5 74 40.5
arahy.Tifrunner.gnm1.ann1.0L2MCG Arachis hypogaea HOM05D000788 ORTHO05D005073 2.8e-07 58.5 74 41.9
arahy.Tifrunner.gnm1.ann1.ZY3Q1N Arachis hypogaea HOM05D000788 ORTHO05D005073 2.8e-07 58.5 74 41.9
EL10Ac3g06591 Beta vulgaris HOM05D000788 ORTHO05D005073 2.8e-07 58.5 74 40.5
FAN07G1104 Fragaria x ananassa HOM05D000788 ORTHO05D005073 2.8e-07 58.5 74 41.9
Manes.15G012600 Manihot esculenta HOM05D000788 ORTHO05D005073 2.8e-07 58.5 74 40.5
Nn3g16187 Nelumbo nucifera HOM05D000788 ORTHO05D005073 2.8e-07 58.5 74 41.9
VMungo1309G0757 Vigna mungo HOM05D000788 ORTHO05D005073 2.8e-07 58.5 68 45.6
MBI07_g31505_MAGBIO Magnolia biondii HOM05D000788 ORTHO05D005073 3.7e-07 58.2 74 43.2
Potri.010G024800 Populus trichocarpa HOM05D000788 ORTHO05D005073 3.7e-07 58.2 74 41.9
PGR119G2102 Punica granatum HOM05D000788 ORTHO05D005073 3.7e-07 58.2 74 37.8
unitig_0.g2596 Utricularia gibba HOM05D000788 ORTHO05D005073 3.7e-07 58.2 74 39.2
Actinidia00028 Actinidia chinensis HOM05D000788 ORTHO05D005073 4.9e-07 57.8 74 39.2
Aqoxy5G00714 Aquilegia oxysepala HOM05D000788 ORTHO05D005073 4.9e-07 57.8 74 40.5
AUR62040374 Chenopodium quinoa HOM05D000788 ORTHO05D005073 4.9e-07 57.8 74 40.5
AUR62041206 Chenopodium quinoa HOM05D000788 ORTHO05D005073 4.9e-07 57.8 74 40.5
Ca_21506_v3 Cicer arietinum L. HOM05D000788 ORTHO05D005073 4.9e-07 57.8 68 45.6
Cc03_g02000 Coffea canephora HOM05D000788 ORTHO05D005073 4.9e-07 57.8 74 37.8
MELO3C006661.2 Cucumis melo HOM05D000788 ORTHO05D005073 4.9e-07 57.8 75 41.3
FAN17G1609 Fragaria x ananassa HOM05D000788 ORTHO05D005073 4.9e-07 57.8 74 40.5
Glyma.07G248000 Glycine max HOM05D000788 ORTHO05D005073 4.9e-07 57.8 74 41.9
Gohir.D10G170200 Gossypium hirsutum HOM05D000788 ORTHO05D005073 4.9e-07 57.8 74 40.5
Gorai.011G189700 Gossypium raimondii HOM05D000788 ORTHO05D005073 4.9e-07 57.8 74 40.5
Zm00001eb421700 Zea mays HOM05D000788 ORTHO05D005073 4.9e-07 57.8 74 41.9
ClCG05G006060 Citrullus lanatus HOM05D000788 ORTHO05D005073 6.3e-07 57.4 75 41.3
CsaV3_3G014600 Cucumis sativus L. HOM05D000788 ORTHO05D005073 6.3e-07 57.4 74 41.9
Nitab4.5_0000960g0080 Nicotiana tabacum HOM05D000788 ORTHO05D005073 6.3e-07 57.4 74 40.5
Nitab4.5_0005076g0010 Nicotiana tabacum HOM05D000788 ORTHO05D005073 6.3e-07 57.4 74 40.5
TWI09G0928 Tripterygium wilfordii HOM05D000788 ORTHO05D005073 6.3e-07 57.4 74 40.5
VMungo1215G2082 Vigna mungo HOM05D000788 ORTHO05D005073 6.3e-07 57.4 74 41.9
Atru.chr4.2830 Acer truncatum HOM05D000788 ORTHO05D005073 8.3e-07 57.0 74 37.8
Ca_01939_v3 Cicer arietinum L. HOM05D000788 ORTHO05D005073 8.3e-07 57.0 68 45.6
Glyma.09G045100 Glycine max HOM05D000788 ORTHO05D005073 8.3e-07 57.0 68 44.1
HanXRQChr03g0080761 Helianthus annuus HOM05D000788 ORTHO05D005073 8.3e-07 57.0 74 40.5
Lsat_1_v5_gn_5_53681 Lactuca sativa HOM05D000788 ORTHO05D005073 8.3e-07 57.0 74 40.5
MBI19_g29232_MAGBIO Magnolia biondii HOM05D000788 ORTHO05D005073 8.3e-07 57.0 74 40.5
Nitab4.5_0004438g0060 Nicotiana tabacum HOM05D000788 ORTHO05D005073 8.3e-07 57.0 74 39.2
Peaxi162Scf00086g00428 Petunia axillaris HOM05D000788 ORTHO05D005073 8.3e-07 57.0 74 40.5
Phvul.009G247700 Phaseolus vulgaris HOM05D000788 ORTHO05D005073 8.3e-07 57.0 68 44.1
Psat1g153680 Pisum sativum HOM05D000788 ORTHO05D005073 8.3e-07 57.0 68 45.6
Potri.003G159600 Populus trichocarpa HOM05D000788 ORTHO05D005073 8.3e-07 57.0 74 37.8
Hund20559 Selenicereus undatus HOM05D000788 ORTHO05D005073 8.3e-07 57.0 74 39.2
TAR362G0916 Trochodendron aralioides HOM05D000788 ORTHO05D005073 8.3e-07 57.0 74 39.2
arahy.Tifrunner.gnm1.ann1.W8ZB9B Arachis hypogaea HOM05D000788 ORTHO05D005073 1.1e-06 56.6 68 44.1
arahy.Tifrunner.gnm1.ann1.X4YETQ Arachis hypogaea HOM05D000788 ORTHO05D005073 1.1e-06 56.6 68 44.1
Glyma.17G026100 Glycine max HOM05D000788 ORTHO05D005073 1.1e-06 56.6 74 40.5
Gohir.A10G163800 Gossypium hirsutum HOM05D000788 ORTHO05D005073 1.1e-06 56.6 74 40.5
Nn4g25874 Nelumbo nucifera HOM05D000788 ORTHO05D005073 1.1e-06 56.6 74 41.9
Nitab4.5_0000570g0110 Nicotiana tabacum HOM05D000788 ORTHO05D005073 1.1e-06 56.6 74 39.2
Solyc01g066870.3 Solanum lycopersicum HOM05D000788 ORTHO05D005073 1.1e-06 56.6 74 39.2
Sopen01g028470 Solanum pennellii HOM05D000788 ORTHO05D005073 1.1e-06 56.6 74 39.2
PGSC0003DMG400011321 Solanum tuberosum HOM05D000788 ORTHO05D005073 1.1e-06 56.6 74 39.2
CiPaw.02G083200 Carya illinoinensis HOM05D000788 ORTHO05D005073 1.4e-06 56.2 68 44.1
DCAR_027079 Daucus carota HOM05D000788 ORTHO05D005073 1.4e-06 56.2 68 42.6
Eucgr.J01664 Eucalyptus grandis HOM05D000788 ORTHO05D005073 1.4e-06 56.2 74 37.8
Oeu027728.2 Olea europaea HOM05D000788 ORTHO05D005073 1.4e-06 56.2 74 37.8
Peaxi162Scf00498g00725 Petunia axillaris HOM05D000788 ORTHO05D005073 1.4e-06 56.2 68 42.6
Psat4g025840 Pisum sativum HOM05D000788 ORTHO05D005073 1.4e-06 56.2 74 41.9
Prupe.1G137500 Prunus persica HOM05D000788 ORTHO05D005073 1.4e-06 56.2 74 37.8
RcHm_v2.0_Chr4g0422121 Rosa chinensis HOM05D000788 ORTHO05D005073 1.4e-06 56.2 74 39.2
Sabra03G0116000 Salix brachista HOM05D000788 ORTHO05D005073 1.4e-06 56.2 74 37.8
SalBow2G0667 Salvia bowleyana HOM05D000788 ORTHO05D005073 1.4e-06 56.2 74 37.8
Sed0015229 Sechium edule HOM05D000788 ORTHO05D005073 1.4e-06 56.2 74 40.5
vmacro08146 Vaccinium macrocarpon HOM05D000788 ORTHO05D005073 1.4e-06 56.2 68 42.6
Actinidia40257 Actinidia chinensis HOM05D000788 ORTHO05D005073 1.8e-06 55.8 74 40.5
DCAR_024566 Daucus carota HOM05D000788 ORTHO05D005073 1.8e-06 55.8 68 38.2
MD16G1170400 Malus domestica HOM05D000788 ORTHO05D005073 1.8e-06 55.8 74 37.8
Phvul.003G105000 Phaseolus vulgaris HOM05D000788 ORTHO05D005073 1.8e-06 55.8 68 44.1
Sed0021789 Sechium edule HOM05D000788 ORTHO05D005073 1.8e-06 55.8 68 42.6
GSVIVG01001129001 Vitis vinifera HOM05D000788 ORTHO05D005073 1.8e-06 55.8 74 37.8
Medtr4g119830 Medicago truncatula HOM05D000788 ORTHO05D005073 2.4e-06 55.5 74 40.5
Oeu023284.1 Olea europaea HOM05D000788 ORTHO05D005073 2.4e-06 55.5 74 39.2
PGSC0003DMG401004637 Solanum tuberosum HOM05D000788 ORTHO05D005073 2.4e-06 55.5 74 37.8
Actinidia14305 Actinidia chinensis HOM05D000788 ORTHO05D005073 3.1e-06 55.1 74 37.8
MSTRG.3921 Avicennia marina HOM05D000788 ORTHO05D005073 3.1e-06 55.1 74 36.5
CANSAT78G0559 Cannabis sativa HOM05D000788 ORTHO05D005073 3.1e-06 55.1 68 42.6
PGR031G1031 Punica granatum HOM05D000788 ORTHO05D005073 3.1e-06 55.1 74 39.2
CDE05G2475 Ceratophyllum demersum HOM05D000788 ORTHO05D005073 4.1e-06 54.7 74 36.5
MD13G1169100 Malus domestica HOM05D000788 ORTHO05D005073 4.1e-06 54.7 74 37.8
Sopen12g034270 Solanum pennellii HOM05D000788 ORTHO05D005073 4.1e-06 54.7 74 37.8
CAN.G129.23 Capsicum annuum HOM05D000788 ORTHO05D005073 5.4e-06 54.3 74 39.2
Haze_01209 Corylus avellana HOM05D000788 ORTHO05D005073 5.4e-06 54.3 74 39.2
Solyc12g099600.2 Solanum lycopersicum HOM05D000788 ORTHO05D005073 5.4e-06 54.3 74 37.8
CDE11G1027 Ceratophyllum demersum HOM05D000788 ORTHO05D005073 7.0e-06 53.9 74 36.5
Lalb_Chr13g0303631 Lupinus albus HOM05D000788 ORTHO05D005073 7.0e-06 53.9 68 42.6
CAN.G484.30 Capsicum annuum HOM05D000788 ORTHO05D005073 9.2e-06 53.5 74 36.5
Lj4g0002436 Lotus japonicus HOM05D000788 ORTHO05D005073 9.2e-06 53.5 74 40.5
Lalb_Chr18g0051711 Lupinus albus HOM05D000788 ORTHO05D005073 9.2e-06 53.5 71 40.8


User provided reference genes

Program Settings