Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 7.7e-158 560.5 288 100.0
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 7.7e-158 560.5 288 100.0
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 1.5e-156 556.2 288 99.0
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 4.6e-142 508.1 291 92.4
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 1.0e-141 506.9 291 92.1
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 1.7e-133 479.6 296 86.1
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 1.2e-115 420.2 295 75.9
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 9.3e-111 404.1 298 74.5
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 2.9e-104 382.5 301 69.1
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 1.5e-100 370.2 303 66.7
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 1.4e-98 363.6 298 66.4
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 1.4e-95 353.6 302 64.6
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 3.4e-89 332.4 306 60.8
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 2.5e-76 289.7 297 57.9
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 4.0e-53 212.6 281 44.8
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 2.7e-49 199.9 291 43.3
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 3.5e-49 199.5 288 43.8
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 5.9e-49 198.7 288 43.8
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 7.7e-49 198.4 270 44.1
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 7.7e-49 198.4 288 43.8
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 2.9e-48 196.4 262 44.7
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 2.9e-48 196.4 266 41.4
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 3.8e-48 196.1 291 41.9
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 1.9e-47 193.7 266 41.0
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 5.5e-47 192.2 275 42.9
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 9.4e-47 191.4 306 39.9
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 1.6e-46 190.7 262 43.5
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 1.6e-46 190.7 277 43.0
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 2.7e-46 189.9 286 42.0
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 4.7e-46 189.1 283 41.0
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 4.7e-46 189.1 283 41.0
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 4.7e-46 189.1 283 41.0
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 6.1e-46 188.7 288 40.6
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 6.1e-46 188.7 273 42.9
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.0e-45 188.0 259 44.8
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 5.2e-45 185.7 283 41.3
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 6.8e-45 185.3 272 40.8
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 8.8e-45 184.9 257 41.6
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 1.2e-44 184.5 277 41.9
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.5e-44 184.1 282 40.4
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 2.0e-44 183.7 269 41.6
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 2.6e-44 183.3 273 41.4
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 3.4e-44 183.0 263 43.7
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 4.4e-44 182.6 283 41.3
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 7.5e-44 181.8 292 39.7
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 7.5e-44 181.8 297 41.4
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 9.8e-44 181.4 295 41.0
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 9.8e-44 181.4 265 43.4
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 9.8e-44 181.4 253 43.5
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.3e-43 181.0 286 41.6
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 1.7e-43 180.6 291 38.1
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 6.3e-43 178.7 267 40.8
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 6.3e-43 178.7 307 39.4
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 8.3e-43 178.3 267 40.8
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 8.3e-43 178.3 299 38.1
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 8.3e-43 178.3 269 40.9
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 1.4e-42 177.6 286 41.3
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 1.8e-42 177.2 267 40.8
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 1.8e-42 177.2 259 42.5
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 1.8e-42 177.2 257 42.0
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.4e-42 176.8 272 40.4
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.4e-42 176.8 272 40.4
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.1e-42 176.0 300 40.7
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 5.4e-42 175.6 285 38.2
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.4e-42 175.6 285 38.2
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 5.4e-42 175.6 293 41.3
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 7.0e-42 175.3 272 39.7
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 7.0e-42 175.3 298 36.6
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 9.1e-42 174.9 313 39.3
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.1e-42 174.9 246 44.7
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 1.2e-41 174.5 299 38.8
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 1.2e-41 174.5 259 41.3
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 1.2e-41 174.5 268 42.5
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-41 174.5 246 44.3
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 1.6e-41 174.1 259 39.0
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 2.0e-41 173.7 300 38.3
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.7e-41 173.3 285 37.9
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 2.7e-41 173.3 247 44.5
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 2.7e-41 173.3 216 46.3
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.5e-41 172.9 277 42.2
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 4.5e-41 172.6 279 41.2
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-41 172.6 246 44.3
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.9e-41 172.2 279 41.9
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 7.7e-41 171.8 312 36.9
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.7e-41 171.8 245 44.5
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 1.0e-40 171.4 251 42.6
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.0e-40 171.4 270 42.2
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.3e-40 171.0 251 42.6
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-40 170.6 246 43.9
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-40 170.6 271 42.1
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-40 170.6 271 42.1
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 1.7e-40 170.6 203 45.8
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.2e-40 170.2 255 40.0
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.9e-40 169.9 271 41.7
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.9e-40 169.9 271 41.7
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 8.5e-40 168.3 286 39.9
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.1e-39 167.9 255 41.6
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 4.2e-39 166.0 294 39.1
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 5.5e-39 165.6 229 45.0
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 1.2e-38 164.5 255 40.4
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 2.1e-38 163.7 314 36.9
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.1e-38 162.2 192 48.4
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 8.0e-38 161.8 267 39.7
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 6.8e-37 158.7 266 39.1
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 2.0e-36 157.1 183 48.6
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 2.8e-35 153.3 260 40.8
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 4.9e-35 152.5 300 37.3
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 8.3e-35 151.8 195 45.1
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 5.4e-34 149.1 175 48.0
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 9.2e-34 148.3 257 40.5
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 2.0e-33 147.1 262 37.8
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.3e-32 144.4 192 41.1
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 2.9e-32 143.3 248 38.7
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 5.0e-32 142.5 281 35.6
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 6.6e-32 142.1 292 37.0
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 5.6e-31 139.0 207 40.6
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 1.2e-30 137.9 262 38.5
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.8e-29 134.0 240 40.8
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.5e-28 131.0 237 37.6
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 3.4e-28 129.8 286 34.6
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.5e-28 128.6 189 42.9
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 2.2e-27 127.1 218 39.0
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 2.2e-27 127.1 245 35.9
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-26 124.4 190 43.7
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.4e-26 124.4 279 32.6
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.4e-26 123.6 165 46.7
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 9.2e-26 121.7 280 32.1
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.2e-25 121.3 166 45.2
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 3.5e-25 119.8 142 47.2
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 3.0e-24 116.7 172 40.7
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 3.9e-24 116.3 122 52.5
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-23 114.0 178 39.9
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 2.8e-22 110.2 219 35.6
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.7e-22 109.4 136 44.9
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.4e-18 97.8 242 33.9
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.4e-18 97.1 128 47.7
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 5.0e-16 89.4 202 32.2
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 5.6e-15 85.9 196 31.6
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 9.5e-15 85.1 255 27.5
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 1.6e-14 84.3 155 37.4
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.9e-10 70.9 94 42.6
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 1.1e-07 61.6 109 36.7
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.2e-06 55.8 91 38.5


User provided reference genes

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