Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 6.4e-29 130.2 71 100.0
C07p30170 Brassica napus HOM05D003570 ORTHO05D004207 6.4e-29 130.2 71 100.0
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 1.9e-25 118.6 70 90.0
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 2.5e-25 118.2 69 92.8
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 2.5e-25 118.2 69 92.8
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 3.3e-25 117.9 70 91.4
C03p39130 Brassica napus HOM05D003570 ORTHO05D004207 2.1e-24 115.2 71 90.1
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 2.8e-24 114.8 71 88.7
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 2.8e-24 114.8 71 90.1
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 2.8e-24 114.8 70 90.0
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 2.8e-24 114.8 71 88.7
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 3.6e-24 114.4 70 87.1
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.1e-23 112.8 70 84.3
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 2.3e-23 111.7 70 82.9
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 5.2e-23 110.5 70 82.9
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.5e-22 109.0 70 81.4
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 8.3e-21 103.2 71 84.5
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 3.9e-18 94.4 66 75.8
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 3.3e-17 91.3 70 71.4
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 1.6e-16 89.0 71 74.6
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 5.2e-15 84.0 58 74.1
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 4.4e-14 80.9 66 63.6
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 1.3e-13 79.3 70 58.6
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 1.3e-13 79.3 76 65.8
CARHR253470 Cardamine hirsuta HOM05D003570 ORTHO05D004207 4.9e-13 77.4 62 64.5
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.9e-12 75.5 70 54.3
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 2.4e-12 75.1 69 55.1
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 4.1e-12 74.3 70 52.9
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 4.1e-12 74.3 70 52.9
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 1.2e-11 72.8 70 52.9
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 2.7e-11 71.6 69 50.7
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 6.0e-11 70.5 70 48.6
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 6.0e-11 70.5 70 48.6
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 7.8e-11 70.1 66 50.0
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.7e-10 68.9 70 47.1
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 2.3e-10 68.6 58 65.5
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 2.3e-10 68.6 70 50.0
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 3.0e-10 68.2 70 48.6
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 3.0e-10 68.2 70 44.3
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 5.1e-10 67.4 70 45.7
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 5.1e-10 67.4 70 48.6
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 5.1e-10 67.4 70 47.1
C02p46270 Brassica napus HOM05D003570 ORTHO05D027618 6.6e-10 67.0 64 57.8
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 6.6e-10 67.0 67 52.2
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 8.6e-10 66.6 70 45.7
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.5e-09 65.9 70 45.7
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 1.5e-09 65.9 36 94.4
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 1.5e-09 65.9 70 44.3
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 1.5e-09 65.9 70 45.7
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 1.5e-09 65.9 70 41.4
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 1.9e-09 65.5 70 42.9
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 1.9e-09 65.5 66 50.0
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 2.5e-09 65.1 66 43.9
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.3e-09 64.7 66 53.0
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 3.3e-09 64.7 66 45.5
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 3.3e-09 64.7 66 51.5
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 4.3e-09 64.3 70 47.1
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 4.3e-09 64.3 70 44.3
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 4.3e-09 64.3 66 50.0
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.3e-09 64.3 66 50.0
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 5.6e-09 63.9 70 45.7
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 5.6e-09 63.9 70 42.9
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 5.6e-09 63.9 70 42.9
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 7.3e-09 63.5 66 50.0
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 7.3e-09 63.5 70 45.7
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 9.5e-09 63.2 66 45.5
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 9.5e-09 63.2 66 45.5
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 1.2e-08 62.8 70 44.3
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 1.6e-08 62.4 70 42.9
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 1.6e-08 62.4 66 48.5
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 2.1e-08 62.0 70 41.4
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 2.1e-08 62.0 63 55.6
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 3.6e-08 61.2 70 42.9
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 3.6e-08 61.2 70 44.3
A02p29200 Brassica napus HOM05D003570 ORTHO05D027618 4.7e-08 60.8 64 53.1
BraA02t07950Z Brassica rapa HOM05D003570 ORTHO05D027618 4.7e-08 60.8 64 53.1
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 4.7e-08 60.8 67 46.3
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 6.2e-08 60.5 70 42.9
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 1.1e-07 59.7 70 41.4
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 1.4e-07 59.3 69 43.5
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 1.4e-07 59.3 70 42.9
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 1.8e-07 58.9 69 42.0
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 3.1e-07 58.2 70 41.4
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 3.1e-07 58.2 70 38.6
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 4.0e-07 57.8 69 42.0
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 5.2e-07 57.4 67 46.3
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 5.2e-07 57.4 70 42.9
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 6.8e-07 57.0 70 40.0
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 8.9e-07 56.6 70 40.0
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 8.9e-07 56.6 66 47.0
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 8.9e-07 56.6 70 38.6
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 8.9e-07 56.6 70 40.0
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 2.0e-06 55.5 69 43.5
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 2.0e-06 55.5 70 42.9
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.0e-06 55.5 70 38.6
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 2.6e-06 55.1 69 39.1
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.6e-06 55.1 70 35.7
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.4e-06 54.7 68 38.2
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 3.4e-06 54.7 70 35.7
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 4.4e-06 54.3 66 40.9
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 5.8e-06 53.9 70 35.7
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 7.6e-06 53.5 69 42.0
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 9.9e-06 53.1 66 40.9


User provided reference genes

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